TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135231.7 + phase: 0 /pseudo
         (943 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC207392 similar to UP|BNK_DROME (P40794) Bottleneck protein, pa...    30  5.0
TC216331 similar to UP|O81446 (O81446) Calcineurin B-like protei...    30  6.5
TC226392                                                               29  8.5

>TC207392 similar to UP|BNK_DROME (P40794) Bottleneck protein, partial (7%)
          Length = 1544

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/47 (38%), Positives = 24/47 (50%)
 Frame = +2

Query: 667  YACFLCLSFFYTGLE*NRSFGVRCNTPFLPLPQLRKLYFICWRLCRL 713
            Y   LCLS F TGLE  R F     + +L L  L+ L ++ + L  L
Sbjct: 962  YFTILCLSSFVTGLEPLRFFYSTSRSTYLSLQVLQTLAYVLYLLLLL 1102


>TC216331 similar to UP|O81446 (O81446) Calcineurin B-like protein 2
           (AT5g55990/MDA7_3), partial (35%)
          Length = 530

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 765 LYLDRIINQQRPPPLNNIESRGSLPWPEDTNVTSMRPSLLTSTVQVLVFVFAMQKVR--L 822
           LYL   I+   P  +++++S  SLP     +  ++  S   +   +L+F   +  +    
Sbjct: 20  LYLSSTISLSSPSQIHSLQSSISLPQIPPNSNQTLHYSKFQNFFTLLLFPLLLPDLLPPR 199

Query: 823 FWLRL*HTLVLFRWKWVKL*GCT 845
           FW      L+ + WKW+K+  C+
Sbjct: 200 FWYL---GLITWSWKWLKVMECS 259


>TC226392 
          Length = 2066

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 4/63 (6%)
 Frame = +3

Query: 667  YACFLCLSFFYTGLE*----NRSFGVRCNTPFLPLPQLRKLYFICWRLCRLN*NNICHLY 722
            + C L  S+F TG+      N  + V   T   PL  L  L  ICW +C++   ++   Y
Sbjct: 1758 FKCLLRESWFTTGIGVHYLNNFDYQVTG*TEVKPLSLLVVLIVICW*VCKIRVTSLVFFY 1937

Query: 723  YGV 725
            + +
Sbjct: 1938 FSI 1946


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.365    0.165    0.642 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,960,862
Number of Sequences: 63676
Number of extensions: 862006
Number of successful extensions: 11943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4855
Number of HSP's successfully gapped in prelim test: 524
Number of HSP's that attempted gapping in prelim test: 6879
Number of HSP's gapped (non-prelim): 5909
length of query: 943
length of database: 12,639,632
effective HSP length: 106
effective length of query: 837
effective length of database: 5,889,976
effective search space: 4929909912
effective search space used: 4929909912
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 64 (29.3 bits)