TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135230.3 + phase: 0 /pseudo
         (605 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI969230                                                              244  6e-65
TC221398                                                              174  8e-44
AW704211                                                              162  4e-40
TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit...    37  0.019
TC219768 similar to GB|AAD17339.1|4325339|F15P23 F15P23.1 {Arabi...    35  0.096
TC223822                                                               32  0.62
TC216731 homologue to GB|AAL10483.1|15983773|AY056792 AT4g29060/...    29  5.3
TC225297 similar to UP|Q6VEJ5 (Q6VEJ5) Alanine aminotransferase,...    29  6.9

>BI969230 
          Length = 781

 Score =  244 bits (624), Expect = 6e-65
 Identities = 119/148 (80%), Positives = 126/148 (84%)
 Frame = -1

Query: 458 PHLYFANDDLEYQTKFPSERLGMGAFRIALESIFNRTHHHSLEYTCFGKPHPSVFKNAEI 517
           P   FANDDLEYQTKF  ERLGMGA R+ LESIFNR H  SLEYT FGKPHPSVFKNAEI
Sbjct: 781 PXXIFANDDLEYQTKFXXERLGMGAXRMXLESIFNRIHPQSLEYTSFGKPHPSVFKNAEI 602

Query: 518 VLQKHVPRVDEDSYDINHKNAQPFQTLYMIGDNPAVDIRGARQTGHPWFSILTRTGVFKG 577
           +L+K V  + +D YDINH N   F+TLYMIGDNPAVDI+GARQTGHPWFSILTRTGVFKG
Sbjct: 601 LLEKLVASLYDDFYDINHDNTSYFKTLYMIGDNPAVDIKGARQTGHPWFSILTRTGVFKG 422

Query: 578 KENHDKFPADLVVDTVEEAVDYILAKEC 605
           KENHDKF ADLVVDTVEEAVDYIL KEC
Sbjct: 421 KENHDKFSADLVVDTVEEAVDYILTKEC 338


>TC221398 
          Length = 891

 Score =  174 bits (442), Expect = 8e-44
 Identities = 102/194 (52%), Positives = 118/194 (60%), Gaps = 10/194 (5%)
 Frame = +2

Query: 359 GEPALVMSEYGFKNVISIDAYASRFENIDPLAPYKKWTTKLATTQNPKFDESGPQIDVFS 418
           GEPA +M+EYGFK  +SID YAS FENIDPLAPYKKWTTKLA T N KF+ES P+ DVFS
Sbjct: 2   GEPAAMMTEYGFKYALSIDEYASCFENIDPLAPYKKWTTKLAATLNAKFNESVPRNDVFS 181

Query: 419 ERVQAAFIVSDPVDWSRDVQVLCDILKTGGLPGRNVGTQPHLYFANDDLEYQTKFPSERL 478
           +RVQAAF+VSDPVDWSRD+Q  C            +   P        L Y T       
Sbjct: 182 KRVQAAFVVSDPVDWSRDIQGGCFFSMDKSCRKIQIIWSPFKI-----LYYYTY*QGPTK 346

Query: 479 GMGAFRIAL----------ESIFNRTHHHSLEYTCFGKPHPSVFKNAEIVLQKHVPRVDE 528
           G   F + +              NRTH  SL YT FGKPH SVFKNAEIVL+K V  + +
Sbjct: 347 GRLNFLLNVWEWELSGLH*NPSSNRTHPCSLRYTYFGKPHSSVFKNAEIVLEKLVASLYD 526

Query: 529 DSYDINHKNAQPFQ 542
           D YDINH +A  F+
Sbjct: 527 DFYDINHDSASYFK 568



 Score =  144 bits (364), Expect = 9e-35
 Identities = 89/142 (62%), Positives = 96/142 (66%), Gaps = 7/142 (4%)
 Frame = +1

Query: 471 TKFPSERLGMGAFRIALESIFNRTHHHSLEYTCFGKPHPSVFKNAEIVLQKHVPRVDEDS 530
           TKFPSERLGMGAFRIALESIF       LE   F       ++   I +Q+      E S
Sbjct: 352 TKFPSERLGMGAFRIALESIFK*DSPLFLEVYLF-------WQTTFICIQECRNCARETS 510

Query: 531 YD-----INHKN--AQPFQTLYMIGDNPAVDIRGARQTGHPWFSILTRTGVFKGKENHDK 583
                  + +K+     F  LYMIGDNPAVDIRGARQTGHPWFSILTRT VFKGKENHDK
Sbjct: 511 GVTL**FL*YKS**RFIF*KLYMIGDNPAVDIRGARQTGHPWFSILTRTVVFKGKENHDK 690

Query: 584 FPADLVVDTVEEAVDYILAKEC 605
           F ADLVVDTVEEAVDYILA EC
Sbjct: 691 FSADLVVDTVEEAVDYILANEC 756


>AW704211 
          Length = 401

 Score =  162 bits (410), Expect = 4e-40
 Identities = 78/99 (78%), Positives = 89/99 (89%)
 Frame = +2

Query: 262 RPSFGIAFDIDGVILLGNTPVGGSPAALRKLYNYDGTLKFPYVFLTNGGGIPEAKRASEL 321
           RP+FGIAFDIDGV+LLGN+PVGGSP AL++LY+ DG LK PYVFLTNGGG PEAKRA EL
Sbjct: 104 RPTFGIAFDIDGVLLLGNSPVGGSPGALKRLYDADGKLKIPYVFLTNGGGYPEAKRAFEL 283

Query: 322 SELLGLNVSASQVLQGHSPFRQLVNRFEDKLIVAAGKGE 360
           S+LLG+NV+ SQVLQGHSPF+QLV RFE+ LIVA GKGE
Sbjct: 284 SKLLGINVTPSQVLQGHSPFKQLVKRFENDLIVAVGKGE 400


>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
           ribosomal protein, partial (24%)
          Length = 689

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 171 IQHVSETRGFPWMIGSIDCMHWEWKNYPKAWEGK 204
           +  + E RGF  M+GSID +HW+ K    AW+G+
Sbjct: 21  LMQICEIRGFQSMLGSIDYLHWK*KTCLVAWKGQ 122


>TC219768 similar to GB|AAD17339.1|4325339|F15P23 F15P23.1 {Arabidopsis
           thaliana;} , partial (26%)
          Length = 982

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 23/61 (37%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
 Frame = -3

Query: 209 NHVRARSRVASRITSRSSEA--HVDKV*NTETNLISLIISLLLLCYPILINDLLIRPSFG 266
           NH+   +R   + +S+S++   HV KV     +   LIISLL++CYP L   ++   SFG
Sbjct: 356 NHIHHPNR*IYKCSSKSTQVSIHV*KV-AVSPSFS*LIISLLIICYPFLPQFIIF*ESFG 180

Query: 267 I 267
           I
Sbjct: 179 I 177


>TC223822 
          Length = 1054

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 29/112 (25%), Positives = 43/112 (37%), Gaps = 13/112 (11%)
 Frame = +3

Query: 485 IALESIFNRTHHHSLEYTCFGKPHPSVFKNAEIVLQKHVPR--------VDEDSYDINHK 536
           +A    F   HH    Y    +P P+   +  +    H+P+          E    I   
Sbjct: 144 LATNPAFRVIHHRIKHYYQEPRPVPTHPNSPSLTPSTHLPQNMMKAKNIKGEGEIPIKFD 323

Query: 537 NAQPFQTLYMIGD-----NPAVDIRGARQTGHPWFSILTRTGVFKGKENHDK 583
           N+ P  T  + G      +P V I  A+    PW    +R GVFKG+ N+ K
Sbjct: 324 NSIPTSTPMVHGQVSKVASPQVGI-SAKVEPEPWHVQGSRVGVFKGEHNNGK 476


>TC216731 homologue to GB|AAL10483.1|15983773|AY056792 AT4g29060/F19B15_90
           {Arabidopsis thaliana;} , partial (13%)
          Length = 723

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 488 ESIFNRTHHHSLEYTCFGKPHPSVFKNAEIVLQKH 522
           ESI N T +  L  TC  K HP +F + + V   H
Sbjct: 705 ESIINETSNSKLNKTCNSKMHPLIFFSIQTVEN*H 601


>TC225297 similar to UP|Q6VEJ5 (Q6VEJ5) Alanine aminotransferase, partial
           (98%)
          Length = 1833

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +1

Query: 272 DGVILLGNTPVGGSPAALRKLYNYDGTLKFPYVFLTNGGG--IPEAKRASELSELLGLNV 329
           DG++     P+   P     +  + G L   Y+    G G  IPE K+  E ++  G+NV
Sbjct: 640 DGILC----PIPQYPLYSASIDLHGGCLVPYYLDEATGWGLEIPELKKQLEAAKSKGINV 807

Query: 330 SASQVLQGHSPFRQLVNRFEDKLIVAAGKGEPALVMSE 367
            A  V+   +P  Q++     + IV   K E  +++++
Sbjct: 808 RALVVINPGNPTGQVLGEANQRDIVEFCKQEGLVLLAD 921


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,674,156
Number of Sequences: 63676
Number of extensions: 350298
Number of successful extensions: 1650
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of query: 605
length of database: 12,639,632
effective HSP length: 103
effective length of query: 502
effective length of database: 6,081,004
effective search space: 3052664008
effective search space used: 3052664008
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)