BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135230.12 + phase: 0
(1373 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207091 similar to UP|Q9LZU7 (Q9LZU7) DNA-binding protein-like,... 773 0.0
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 40 0.009
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 35 0.30
TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial... 34 0.51
TC227539 similar to UP|Q84WK2 (Q84WK2) At1g44770, partial (34%) 33 0.66
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops... 33 0.86
TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated pr... 33 1.1
TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6... 33 1.1
TC224263 weakly similar to UP|Q6GQH4 (Q6GQH4) Egr1 protein, part... 33 1.1
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 32 1.9
TC227358 weakly similar to UP|ZPRO_MOUSE (Q9DA39) Z-protein (061... 32 1.9
TC227356 homologue to UP|LIMD_HUMAN (Q9UGP4) LIM domains contain... 32 2.5
TC233769 weakly similar to UP|Q7RAI4 (Q7RAI4) Dentin phosphoryn ... 32 2.5
TC217636 homologue to UP|O04235 (O04235) Transcription factor, p... 32 2.5
TC210969 31 3.3
CO983573 31 4.3
TC218053 weakly similar to UP|Q6I621 (Q6I621) Protein phosphatas... 31 4.3
TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%) 31 4.3
TC234824 similar to UP|Q9I7K2 (Q9I7K2) CG4655-PA, partial (4%) 31 4.3
TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembl... 31 4.3
>TC207091 similar to UP|Q9LZU7 (Q9LZU7) DNA-binding protein-like, partial (23%)
Length = 1628
Score = 773 bits (1997), Expect = 0.0
Identities = 381/424 (89%), Positives = 396/424 (92%), Gaps = 1/424 (0%)
Frame = +2
Query: 951 NRVRSNPGDPCILETQEPLQDLVRGVLKIFSSKTAPLGAKGWKVLAVYEKSTRSWSWIGP 1010
++VRSNPGDPCILETQEPLQDLVRGVLKIFSSKTAPLGAKGWKVLAVYEKSTRSWSW GP
Sbjct: 2 HQVRSNPGDPCILETQEPLQDLVRGVLKIFSSKTAPLGAKGWKVLAVYEKSTRSWSWTGP 181
Query: 1011 VLHNSSDHDPIEEVTSPEAWGLPHKMLVKLVDSFANWLKCGQDTLKQIGSLPAPPLELMQ 1070
V+HNS D+D EEVTSPEAWGLPHKMLVKLVDSFANWLKCGQ+TL+QIGSLPAPPLELMQ
Sbjct: 182 VIHNSPDYDTTEEVTSPEAWGLPHKMLVKLVDSFANWLKCGQETLQQIGSLPAPPLELMQ 361
Query: 1071 INLDEKERFRDLRAQKSLNTISPSSEEVRAYFRKEELLRYSIPDRAFSYTAADGKKSIVA 1130
+NLDEKERFRDLRAQKSLNTI PSSEEVR YFRKEE+LRYSIPDRAFSYTAADGKKSIVA
Sbjct: 362 VNLDEKERFRDLRAQKSLNTIRPSSEEVRTYFRKEEVLRYSIPDRAFSYTAADGKKSIVA 541
Query: 1131 PLRRCGGKPTSKARDHFMLKRDRPPHVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYI 1190
PLRRCGGKPTSKARDHFMLKRDRPPHVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYI
Sbjct: 542 PLRRCGGKPTSKARDHFMLKRDRPPHVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYI 721
Query: 1191 VEDVSDEKINQVVSGALDRLHYERDPCVLFDQERKLWVYLHREREEEDFDDDGTSSTKKW 1250
VEDVSD +INQVVSGALDRLHYERDPCV FD ERKLWVYLHREREEEDF+DDGTSSTKKW
Sbjct: 722 VEDVSDAQINQVVSGALDRLHYERDPCVQFDGERKLWVYLHREREEEDFEDDGTSSTKKW 901
Query: 1251 KRQKKDVADQSDQAPVTVACNGTGEQSGYDLCSDLNVD-PPCIEDDKEAVQLLTTDTRPN 1309
KRQKKD ADQSDQ VTVAC GTGEQSGYDLCSDLNVD PPCI+DDK ++ L TDTRPN
Sbjct: 902 KRQKKDAADQSDQGTVTVACPGTGEQSGYDLCSDLNVDPPPCIDDDK-GMEPLPTDTRPN 1078
Query: 1310 AEDQVVVNPVSEVGNSCEDNSMTWEALDLNPTRELCQENSTNEDFGDESFGRERPVGLLS 1369
AE V VN SE GN+C+ NSM WEALDLNPTRELCQENSTNED DESFGRERPVGLLS
Sbjct: 1079 AEAHVDVNRASEEGNACDGNSMAWEALDLNPTRELCQENSTNEDLDDESFGRERPVGLLS 1258
Query: 1370 ASLL 1373
ASLL
Sbjct: 1259 ASLL 1270
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 39.7 bits (91), Expect = 0.009
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 3 IEKNSFKV--SRVDTECEPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDD 60
+E+N KV D E E + + + D+ED + + +E D++DDE DDA G DD
Sbjct: 251 VEENEVKVLVEEDDEEYESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDD 430
Score = 32.0 bits (71), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGE 68
DEE+ + G D+D+D DD+D D+ D E GE
Sbjct: 440 DEEEGDVQRGGEPDDDDNDSDDDSDDDEDEDEEDEEEQGE 559
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 14 DTECEPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFD 62
D E + E + DEED ++ DEDD+E D G DD D
Sbjct: 344 DEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDD 490
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 34.7 bits (78), Expect = 0.30
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFD 62
D +D N G ESD+DD++ DD D DD D
Sbjct: 383 DSDDDPEANGGGESDDDDEDDDDDDDDNDEDDGD 484
Score = 30.4 bits (67), Expect = 5.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFD 62
D+ED + G E+D DDD +A+ G SDD D
Sbjct: 341 DDEDFSGDDGGEEADSDDDP--EANGGGESDDDD 436
>TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (82%)
Length = 1066
Score = 33.9 bits (76), Expect = 0.51
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 29 DEEDVQRRNSGNESDEDDDEFDD-ADSGAGSDD 60
DEEDV E+DEDD E DD ++ AGS+D
Sbjct: 744 DEEDVDSEADDEENDEDDSEDDDQEENDAGSED 842
>TC227539 similar to UP|Q84WK2 (Q84WK2) At1g44770, partial (34%)
Length = 1189
Score = 33.5 bits (75), Expect = 0.66
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = +2
Query: 414 RNPNQSSDMQLFA-AKPPSKKKGKYAENVQQFVGSRGSKLSHNVDSIHSPDPDDLFYNKR 472
RNPN S+ Q FA ++ P+ KK + + G+RG + + H P P L ++R
Sbjct: 71 RNPNHHSENQRFAQSEDPNLKKSDHEKRRGGQDGARGRRRGLDRRRTHPPLPPPLQSSRR 250
Query: 473 PAQELGMSSLFKYEDWNPKSKKRKAERESPDLSYTAYRSSSPQVSNRLFS 522
P ++R+ P +A R S+PQ RL S
Sbjct: 251 P-------------------RRRRCLPLRPRFRVSAIRKSTPQELARLES 343
>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
thaliana}, partial (28%)
Length = 668
Score = 33.1 bits (74), Expect = 0.86
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = -1
Query: 18 EPMSKESMSSGD-EEDVQRRNSGNESDEDDDEFDDADSGAGSDD 60
E S E D E+D + +G +D+DD + DD D G DD
Sbjct: 452 EDFSGEGEEEADPEDDPEANGAGGSNDDDDSDEDDDDDNDGDDD 321
>TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated protein-like
(At4g21660), partial (59%)
Length = 1844
Score = 32.7 bits (73), Expect = 1.1
Identities = 37/201 (18%), Positives = 77/201 (37%), Gaps = 7/201 (3%)
Frame = +2
Query: 746 DENGVGQSRFWRKGQKNVAHKDDRDERSEVPLLGCNSAMKKRKMKFGAADFGERDEDANL 805
+E V +++ W ++ +++ +E E M++ +++ G + +
Sbjct: 821 EEEPVDKTKHWGDLEEEEEEEEEEEEEEE------EEEMEEEELEAGI-------QSVDS 961
Query: 806 LSSNPSKIDDLPAFSLKRKSKKKPGAEM--VISEMENSELP-----LTHTVTADVEVETK 858
LSS P+ ++ L+++ +K+P + V+ E E P THT + K
Sbjct: 962 LSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEEKIAPGTLLGTTHTYVVGTGTQDK 1141
Query: 859 PQKKPYILITPTVHTGFSFSIMHLLTAVRTAMISPPEVESLEAGKPVEQQNKAQEDSLNG 918
K L+ T + P E+E++E P + + +E+ L
Sbjct: 1142SGAKRVDLLRGQ------------KTDKVDVTLQPEELEAMENVLPAKYEEAREEEKLRS 1285
Query: 919 VISSDKVDDKVAANVEPSDQK 939
+ D VA N + +K
Sbjct: 1286--QREDFSDMVAENEKKRKRK 1342
>TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6, partial
(26%)
Length = 894
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 3 IEKNSFKVSRVDTECEPMSKESMSSGDEEDVQRRNSGN-----ESDEDDDEFDDADSGAG 57
+++N K + D E E +E G + + R + G E +EDDD+ DD+D G
Sbjct: 244 LKENDDKDLQNDHEGENDEREEDRKG--KGIMRDDKGKGKMILEEEEDDDDDDDSDDGGD 417
Query: 58 SDD 60
SDD
Sbjct: 418 SDD 426
>TC224263 weakly similar to UP|Q6GQH4 (Q6GQH4) Egr1 protein, partial (8%)
Length = 790
Score = 32.7 bits (73), Expect = 1.1
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
Frame = -2
Query: 28 GDEEDVQRRNSGNESDEDDDE--FDDADSGAGSDDFDLLELGETGAEF 73
G E++ N NE DED+DE DD D +GS++++ ET EF
Sbjct: 642 GKEDEQGSDNDENEDDEDEDEDSDDDYDEDSGSEEYE-----ETEEEF 514
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 32.0 bits (71), Expect = 1.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFD 62
++ED + G E+D DDD +A+ G GSDD D
Sbjct: 342 EDEDFSGDDGGEEADSDDD--PEANGGGGSDDDD 437
>TC227358 weakly similar to UP|ZPRO_MOUSE (Q9DA39) Z-protein (0610007H07Rik),
partial (26%)
Length = 1082
Score = 32.0 bits (71), Expect = 1.9
Identities = 19/59 (32%), Positives = 29/59 (48%)
Frame = -1
Query: 15 TECEPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETGAEF 73
T+C+ K DE+DV+ ++ +ED D D D GA D ++ L G+ G F
Sbjct: 371 TQCDEGDK------DEDDVESQSGAGGGEEDADWADGDDDGADDDGYEQL-YGDYGVYF 216
>TC227356 homologue to UP|LIMD_HUMAN (Q9UGP4) LIM domains containing protein
1, partial (3%)
Length = 570
Score = 31.6 bits (70), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 29 DEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELGETGAEF 73
+E+DV+ ++ +ED D D D GA D ++ L+ G+ G F
Sbjct: 331 NEDDVESQSGAGGGEEDTDWADGDDDGADDDGYEQLD-GDYGVHF 200
>TC233769 weakly similar to UP|Q7RAI4 (Q7RAI4) Dentin phosphoryn (Fragment),
partial (3%)
Length = 512
Score = 31.6 bits (70), Expect = 2.5
Identities = 19/71 (26%), Positives = 36/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 8 FKVSRVDTECEPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDFDLLELG 67
F + +++T+ K+ + DEE+ QR+ + S+ED D DD +++ + EL
Sbjct: 61 FMIKKIETQEMEA*KKEQEAKDEEEQQRKEIDDGSEEDFDSDDD-----NNEERSITELN 225
Query: 68 ET--GAEFCQI 76
T FC++
Sbjct: 226 TTC*NFVFCRV 258
>TC217636 homologue to UP|O04235 (O04235) Transcription factor, partial (45%)
Length = 1101
Score = 31.6 bits (70), Expect = 2.5
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Frame = +2
Query: 733 NDEDDSLENRLLADENGVGQSRFWRKGQKNVAHKDDR----DERSEVPLLGCNSAMKKRK 788
ND+DD+++ L +N G+ + VA KDD D+ +S +K K
Sbjct: 329 NDDDDAVDPHLERIKNEAGEDESDEEDSDFVADKDDEGSPTDDSGADDSDATDSGDEKEK 508
Query: 789 MKFGAADFGERDEDANLLSSNPSKIDDLPAFSLKRKSKKKPGAE-------MVISEMENS 841
A ++D + +S DD K+K KK P A M S++E
Sbjct: 509 ---PAKKESKKDLPSKASTSKKKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERE 679
Query: 842 ELPLTH 847
L T+
Sbjct: 680 NLKKTN 697
>TC210969
Length = 502
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 1217 CVLFDQERKLWVYLHREREEEDFDDDGTSSTKKWKRQKKDVADQSDQAPVTVACNGTGEQ 1276
C+L+ R Y + E +DFD++G S T + DVA + D+ + A E+
Sbjct: 107 CILWAPSRNPTRYAYMEETGDDFDEEGISLTSSVAKISGDVAAKLDRKAIDHAFGEDLEE 286
Query: 1277 SGYDLC 1282
+ C
Sbjct: 287 DKRE*C 304
>CO983573
Length = 435
Score = 30.8 bits (68), Expect = 4.3
Identities = 16/67 (23%), Positives = 30/67 (43%)
Frame = -2
Query: 2 AIEKNSFKVSRVDTECEPMSKESMSSGDEEDVQRRNSGNESDEDDDEFDDADSGAGSDDF 61
A + S + +DT ++E+ D ++ GN++D+D+ D G D
Sbjct: 425 ASSEKSTQADNIDTHINCDNEENCGDNDNDNNSNDGGGNKNDDDNGNKDMGVFGTSGPDQ 246
Query: 62 DLLELGE 68
+ +EL E
Sbjct: 245 ETVELME 225
>TC218053 weakly similar to UP|Q6I621 (Q6I621) Protein phosphatase 2A B'kappa
subunit, partial (74%)
Length = 2136
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/21 (61%), Positives = 15/21 (70%)
Frame = -3
Query: 552 SHMLARGEETESDSSEQWDDD 572
SH++ R E ES SSEQWD D
Sbjct: 1540 SHLIMRTIEAESHSSEQWDHD 1478
>TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%)
Length = 609
Score = 30.8 bits (68), Expect = 4.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 29 DEEDVQRRNSGNESDEDDDEFDDAD 53
D+ED++ + +E D+DDD+ DD D
Sbjct: 150 DDEDIEEDDDEDEEDDDDDDDDDDD 224
>TC234824 similar to UP|Q9I7K2 (Q9I7K2) CG4655-PA, partial (4%)
Length = 426
Score = 30.8 bits (68), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 40 NESDEDDDEFDDADSGAGSDD 60
++ D+DDD+ DD D G G DD
Sbjct: 417 HDDDDDDDDDDDDDGGGGGDD 355
>TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembly protein,
partial (20%)
Length = 777
Score = 30.8 bits (68), Expect = 4.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 29 DEEDVQRRNSGNESDEDDDEFDDAD 53
D+ED++ + +E D+DDD+ DD D
Sbjct: 101 DDEDIEEDDDEDEEDDDDDDDDDDD 175
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,097,088
Number of Sequences: 63676
Number of extensions: 751072
Number of successful extensions: 3550
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3427
length of query: 1373
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1264
effective length of database: 5,698,948
effective search space: 7203470272
effective search space used: 7203470272
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC135230.12