BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134822.6 + phase: 0
(289 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205709 weakly similar to UP|O45549 (O45549) C. elegans NUD-1 p... 367 e-102
TC205708 weakly similar to UP|O35685 (O35685) MNUDC protein (Nuc... 279 1e-75
TC229080 76 2e-14
TC205710 similar to UP|Q8L5X1 (Q8L5X1) Fimbrin-like protein (Act... 63 1e-10
BE023042 similar to SP|P26585|HMGL HMG1/2-like protein (SB11 pro... 36 0.018
TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, part... 36 0.018
TC204652 similar to UP|H1_PEA (P08283) Histone H1, partial (81%) 32 0.26
TC216791 similar to UP|O23144 (O23144) Proton pump interactor (A... 31 0.57
TC214485 similar to UP|O23144 (O23144) Proton pump interactor (A... 31 0.57
TC225910 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, part... 30 0.98
TC234331 weakly similar to UP|Q96316 (Q96316) Blue-copper bingin... 30 0.98
TC228728 weakly similar to UP|Q84TD4 (Q84TD4) At2g17540, partial... 30 0.98
TC220935 30 1.3
TC222447 similar to UP|O48933 (O48933) Histidinol dehydrogenase ... 30 1.3
AI988252 30 1.7
TC207509 30 1.7
TC217579 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (19%) 29 2.2
BE612319 29 2.2
BM523395 29 2.2
TC225033 similar to UP|O65758 (O65758) Histone H1, partial (81%) 29 2.8
>TC205709 weakly similar to UP|O45549 (O45549) C. elegans NUD-1 protein
(Corresponding sequence F53A2.4), partial (31%)
Length = 1291
Score = 367 bits (941), Expect = e-102
Identities = 190/301 (63%), Positives = 229/301 (75%), Gaps = 13/301 (4%)
Frame = +2
Query: 1 MAIISDYQDDNQTKTSSSSSSQPKPSKPIP---FSSTFDPSNPTTFLEKVFDFIAKESTN 57
MAIISD+ ++ Q K + SS QP+ S FS+ FD SNP FLE+VF F+++ S +
Sbjct: 41 MAIISDFNEEEQ-KPTHSSPPQPQSSSSSSSSSFSAAFDRSNPIAFLERVFQFVSEHS-D 214
Query: 58 FFDKDSAEKVVLSAVRAARVKKAKSVAAEKAKIAAK--EKAKAAAEKKLNDE-------- 107
F +SAEK + VRAA KK + + +E+ K K E KA+ E++ +D+
Sbjct: 215 FLATESAEKEIALLVRAAGKKKREFLKSEREKAEKKKREDLKASEEREKSDKRLKEEKEP 394
Query: 108 KSEAVTEKIDEKAAPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLK 167
K+E ++ PN+GNG+DLEKYSWTQ+LQE+NVNVPVPNGTKS FV EIKKNHLK
Sbjct: 395 KAEDTSKDESTSKVPNKGNGLDLEKYSWTQSLQEVNVNVPVPNGTKSRFVTVEIKKNHLK 574
Query: 168 VGLKGQPPIIDRELYKSIKPDECYWSIEDQNTVSILLTKHDQMDWWKCLVKGDPEINTQK 227
VGLKGQPPII+ E YKS+KPD+CYWSIEDQN +SILLTKHDQM+WWKCLVKGDPEI+TQK
Sbjct: 575 VGLKGQPPIIEGEFYKSVKPDDCYWSIEDQNAISILLTKHDQMEWWKCLVKGDPEIDTQK 754
Query: 228 VEPASSKLGDLDSETRMTVEKMMFDQRQKSMGLPTSEELQKEEMMKKFMSQHPNMDFSGA 287
VEP +SKLGDLD ETR TVEKMMFDQRQKSMGLPTSEELQK+EM+KKFMS+HP MDFS A
Sbjct: 755 VEPENSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEMLKKFMSEHPEMDFSRA 934
Query: 288 K 288
K
Sbjct: 935 K 937
>TC205708 weakly similar to UP|O35685 (O35685) MNUDC protein (Nuclear
distribution gene C homolog) (Sig 92 protein) (Mus
musculus 10 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:6530413H12
product:nuclear distribution gene C homolog
(Aspergillus), full inser, partial (15%)
Length = 757
Score = 279 bits (713), Expect = 1e-75
Identities = 141/246 (57%), Positives = 177/246 (71%), Gaps = 10/246 (4%)
Frame = +3
Query: 1 MAIISDYQDDNQTKTSSSSSSQPKPSKPIPFSSTFDPSNPTTFLEKVFDFIAKESTNFFD 60
MAIISD+ ++ SS S FS+TFD SNP FLE+VF+F++++S +F
Sbjct: 21 MAIISDFNEEEPKPAHSSPPQPQSSSSSSSFSATFDRSNPIAFLERVFEFVSEQS-DFLA 197
Query: 61 KDSAEKVVLSAVRAARVKKAKSVAAEKAKIAAKEKA-------KAAAEKKLNDEK---SE 110
SAEK ++S V AA KK + + AE+ K++ + EK+LN+EK +E
Sbjct: 198 TQSAEKEIVSLVHAAGKKKRELLKAERENADKKKREDLKVTEERQKVEKRLNEEKELKAE 377
Query: 111 AVTEKIDEKAAPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGL 170
+ PN+GNG+DLEKYSWTQ+LQE+NVNVPVPNGTKS FV EIKKNHLKVGL
Sbjct: 378 DTNKNESASRVPNKGNGLDLEKYSWTQSLQEVNVNVPVPNGTKSRFVTVEIKKNHLKVGL 557
Query: 171 KGQPPIIDRELYKSIKPDECYWSIEDQNTVSILLTKHDQMDWWKCLVKGDPEINTQKVEP 230
KGQPPII+ E +KS+KPD+CYWSIEDQN++SILLTKHDQM+WWKCLVKGDPEI+TQKVEP
Sbjct: 558 KGQPPIIEGEFHKSVKPDDCYWSIEDQNSISILLTKHDQMEWWKCLVKGDPEIDTQKVEP 737
Query: 231 ASSKLG 236
+SKLG
Sbjct: 738 ENSKLG 755
>TC229080
Length = 792
Score = 75.9 bits (185), Expect = 2e-14
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 2/199 (1%)
Frame = +3
Query: 93 KEKAKAAAEKKLNDEKSEAVTEKI-DEKAAPNQGNGMDLEKYSWTQTLQELNVNVPVPNG 151
KE+ + E + + + EK+ EK NG + + W QTL E+N+ + +P
Sbjct: 33 KEEEEEEEESQCRKP*KQNMAEKLAPEKRHSFVHNGQKV--FEWDQTLDEVNIYITLPPN 206
Query: 152 TKSGFVICEIKKNHLKVGLKGQPPIIDRELYKSIKPDECYWSIEDQNTVSILLTKHDQMD 211
S C+I+ HL++G+KG PP ++ +L +K D +W++ED + + I L K D+
Sbjct: 207 VHSKQFYCKIQSKHLELGIKGNPPYLNHDLTSPVKTDSSFWTLED-DIMHITLQKRDKGQ 383
Query: 212 WWKCLVKGDPEINTQKVEPASSKLGDLDSETRMTVEKMMFDQRQKSMGLPTSEEL-QKEE 270
W + G G LD P + +L QK
Sbjct: 384 TWASPILGQ---------------GQLD---------------------PYATDLEQKRL 455
Query: 271 MMKKFMSQHPNMDFSGAKF 289
M+++F ++P DFS A+F
Sbjct: 456 MLQRFQEENPGFDFSQAQF 512
>TC205710 similar to UP|Q8L5X1 (Q8L5X1) Fimbrin-like protein (Actin binding
motif), partial (11%)
Length = 714
Score = 63.2 bits (152), Expect = 1e-10
Identities = 42/124 (33%), Positives = 66/124 (52%), Gaps = 8/124 (6%)
Frame = +2
Query: 11 NQTKTSSSSSSQPKP-SKPIPFSSTFDPSNPTTFLEKVFDFIAKESTNFFDKDSAEKVVL 69
N+ + + SS P+P S FS TFD SNP TFL +VF+F++ E ++F + SAEK V
Sbjct: 59 NEEEQKPAHSSPPQPQSSSSSFSGTFDMSNPITFLVRVFEFVS-EHSDFLETKSAEKEVA 235
Query: 70 SAVRAARVKKAKSVAAEKAKIAAKE-------KAKAAAEKKLNDEKSEAVTEKIDEKAAP 122
S V A KK + + E+ K+ K+ K + ++K+L +EK + +K+
Sbjct: 236 SLVCAVE-KKREFLKVEREKVEKKKREDLKASKERGKSDKRLKEEKKSKAEDTNKDKSTS 412
Query: 123 NQGN 126
N
Sbjct: 413 RVPN 424
>BE023042 similar to SP|P26585|HMGL HMG1/2-like protein (SB11 protein).
[Soybean] {Glycine max}, partial (84%)
Length = 388
Score = 36.2 bits (82), Expect = 0.018
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +2
Query: 36 DPSNPTTFLEKVFDFIAKESTNFFDKDSAEKVVLSAV-RAARVKKAKSVAAEKAKIAAK- 93
DPS P VFDFI +E F K+ E + AV ++AR K AEKA A+
Sbjct: 116 DPSKPKRPASAVFDFI-EEFRKVFSKEHPENKAVCAVGKSARTKWKTMSDAEKAPYVAES 292
Query: 94 EKAKAAAEKKLNDEKSEAVTEKIDEKAAPNQGNGMDLEK 132
EK K EK + A +K + P G+ D EK
Sbjct: 293 EKRKVEFEKSI-----RAYIKK--QAEGPTGGDEEDSEK 388
>TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, partial (3%)
Length = 1311
Score = 36.2 bits (82), Expect = 0.018
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = +3
Query: 12 QTKTSSSSSS-----QPKPSKPIPFSSTFDPSNPTTFLEKVFDFIAKESTNFFDKDSAEK 66
+TKTSSSSSS + KPS TF TT ++K D K ST +
Sbjct: 117 KTKTSSSSSSSRALVKAKPSNTAKVDPTF-----TTMVKKFMDRKPKSST------ATRL 263
Query: 67 VVLSAVRAARVKKAKSVAAEKAKIAAKEKAKAAAEKKLNDEKSEAVTE 114
++ S A +KK A + + K K A+EKK EK +A+TE
Sbjct: 264 IIPSDSLAKDLKKDAKKVAGFSALQKKLFGKGASEKK---EKVKALTE 398
>TC204652 similar to UP|H1_PEA (P08283) Histone H1, partial (81%)
Length = 1347
Score = 32.3 bits (72), Expect = 0.26
Identities = 34/107 (31%), Positives = 43/107 (39%)
Frame = +3
Query: 15 TSSSSSSQPKPSKPIPFSSTFDPSNPTTFLEKVFDFIAKESTNFFDKDSAEKVVLSAVRA 74
+SSSSSS K KP S P K + D + + + +
Sbjct: 492 SSSSSSSPAKKKKPAAAKSKPKPK-------------PKPAAKAKDTKATKSKAPAKPKP 632
Query: 75 ARVKKAKSVAAEKAKIAAKEKAKAAAEKKLNDEKSEAVTEKIDEKAA 121
A KAK+ A KAK AAK KA AAA+ K K +A K A
Sbjct: 633 AAKPKAKAPA--KAKPAAKPKASAAAKPKPAAAKPKAAKPAAKSKPA 767
>TC216791 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (25%)
Length = 1385
Score = 31.2 bits (69), Expect = 0.57
Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 6/45 (13%)
Frame = +3
Query: 73 RAARVKKAKSVAAEKAKIAAKEKAKAA------AEKKLNDEKSEA 111
R + KAK K K+A K AKAA AEKKL D + +A
Sbjct: 654 REEEIAKAKQALERKKKLAEKAAAKAAIRAQKEAEKKLKDREKKA 788
>TC214485 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (33%)
Length = 1501
Score = 31.2 bits (69), Expect = 0.57
Identities = 20/53 (37%), Positives = 23/53 (42%)
Frame = +1
Query: 73 RAARVKKAKSVAAEKAKIAAKEKAKAAAEKKLNDEKSEAVTEKIDEKAAPNQG 125
R + KAK K K A K AKAA + EK V EK +K A G
Sbjct: 763 REEEIAKAKQALERKKKQAEKAAAKAATRAQKEAEKKLKVREKKAKKVAGGTG 921
>TC225910 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, partial (32%)
Length = 1272
Score = 30.4 bits (67), Expect = 0.98
Identities = 28/129 (21%), Positives = 56/129 (42%), Gaps = 14/129 (10%)
Frame = +2
Query: 36 DPSNPTTFLEKVFDFIAKESTNFFDKDSAEKVVLSAVRAARVKKAKSVAAEKAKIAAKEK 95
DPS P ++++F I + D K + ++ VAAEKA+ A++
Sbjct: 407 DPSAPLKRVDELFSPIPE--------DGRRKAYAEMQEKTKAEEEARVAAEKAREASESA 562
Query: 96 AKAAAE-KKLNDEKSEA--VTEKIDEKAAPNQGNGMDLEK-----------YSWTQTLQE 141
K E K+L+ +++ A + ++ EKA + G +E +SW + +
Sbjct: 563 KKLEEEVKRLSQQETRAASLAQEAQEKA---EAGGASVENLLNKAKDFGAGFSWEKLSSQ 733
Query: 142 LNVNVPVPN 150
+ ++ P+
Sbjct: 734 ITTSIQKPD 760
>TC234331 weakly similar to UP|Q96316 (Q96316) Blue-copper binging protein
III (Uclacyanin 3), partial (13%)
Length = 710
Score = 30.4 bits (67), Expect = 0.98
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 16 SSSSSSQPKPSKPIPFSSTFDPSNPTT 42
SSSSS P PS +P SSTF +P T
Sbjct: 220 SSSSSPYPPPSSSLPPSSTFTNKSPPT 300
>TC228728 weakly similar to UP|Q84TD4 (Q84TD4) At2g17540, partial (25%)
Length = 1093
Score = 30.4 bits (67), Expect = 0.98
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 68 VLSAVRAARVKKAKSVAAEKAKIAAKEKAKAAAEKKLNDEKSEAVTEKIDEKAAPNQGNG 127
V+ A +AA V A S AA+ A+ AAKEKA+ AA+ +++ + E+A ++
Sbjct: 393 VVEASKAAAV--AASKAAKAARAAAKEKAETAAKAVAAAKRALDLVSSFSEEAVSSKERN 566
Query: 128 MDLEK 132
+ K
Sbjct: 567 LKKNK 581
>TC220935
Length = 669
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -3
Query: 147 PVPNGTKSGFVICEIKKNHLKVGLKGQPPII 177
P+P+GT G I E+K +K+G K P I+
Sbjct: 376 PLPSGTLHGGCILEVKLRQIKIGRKLLPSIV 284
>TC222447 similar to UP|O48933 (O48933) Histidinol dehydrogenase (Fragment),
partial (39%)
Length = 656
Score = 30.0 bits (66), Expect = 1.3
Identities = 36/113 (31%), Positives = 51/113 (44%), Gaps = 8/113 (7%)
Frame = +1
Query: 4 ISDYQDDNQTKTSSSS-SSQPKPSKPIPFSSTFDPSNPTTF-LEKVFDFIAKESTNFFDK 61
I+ Y+ N T + S S+P+ I FSS F NP + K D KE T+ FDK
Sbjct: 115 INSYRLSNLTPSELQSLKSRPR----IDFSSIFSVVNPIVDDVHKRGDAAVKEYTSKFDK 282
Query: 62 DSAEKVV------LSAVRAARVKKAKSVAAEKAKIAAKEKAKAAAEKKLNDEK 108
+KVV V +K+A VA + I A A+ + EK + + K
Sbjct: 283 VELDKVVEVVSELPDPVLDPPIKEAFDVAYD--NIYAFHAAQKSPEKSVENMK 435
>AI988252
Length = 399
Score = 29.6 bits (65), Expect = 1.7
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 15 TSSSSSSQPKPSKPIPFSSTFDPSNPTTFLEKVFDFIAKE 54
+SSSSSS S P S+TF PSN + L V +AKE
Sbjct: 26 SSSSSSSSSSSSLNPPCSTTFSPSNDGS-LRSVI*IVAKE 142
>TC207509
Length = 641
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 11 NQTKTSSSSSSQPKPSKPIPFSSTFDPSNP 40
NQT+T S P PS P P S+ +P +P
Sbjct: 160 NQTQTLPEDPSNPSPSNPSPTPSSPNPHHP 249
>TC217579 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (19%)
Length = 1850
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 14 KTSSSSSSQPKPSKPIPFSSTFDPSNPTTFLEKVFDFIAKESTNFFD 60
++S S PS P+ FSS+ P P +LE FDF +S D
Sbjct: 1242 RSSGFSFDDSVPSTPL-FSSSSSPQRPKEWLETAFDFSRFDSFRTHD 1379
>BE612319
Length = 398
Score = 29.3 bits (64), Expect = 2.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +2
Query: 16 SSSSSSQPKPSKPIPFSSTFDPSNPTTFLE-----KVFDFIAKESTNF-FDKDSAEKVVL 69
S S S P P P ST P+ PT+ + +VF + E N ++D+ +KVV
Sbjct: 113 SLSLSPSPSPILTDPLLSTSSPATPTSLEDAYEALRVFQILGIEEKNTPVNEDTCQKVVE 292
Query: 70 SAVRAARVK 78
S ++ +K
Sbjct: 293 SLASSSPLK 319
>BM523395
Length = 430
Score = 29.3 bits (64), Expect = 2.2
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 63 SAEKVVLSAVRAARVKKAKSVAAEKAKIAAKEKAKAAAEKKLN--DEKSEAVTEKIDEKA 120
S++K S A R+K A AA+ A E+A AAA + +N +K E + +++
Sbjct: 146 SSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKRE 325
Query: 121 APNQGNGMDLEK 132
A Q M EK
Sbjct: 326 AKRQMYLMSTEK 361
>TC225033 similar to UP|O65758 (O65758) Histone H1, partial (81%)
Length = 1228
Score = 28.9 bits (63), Expect = 2.8
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 70 SAVRAARVKKAKSVAAEKAKIAAKEKAKAAAEKKLNDEKSEAVTEKIDEKAA 121
+A AA+ AA K K AK KAKAAA K + ++A +K+ K A
Sbjct: 835 AAKPAAKPASKPKAAAPKKKAVAKPKAKAAATKP-KAKPAKAAPKKVAAKPA 987
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.126 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,883,573
Number of Sequences: 63676
Number of extensions: 147305
Number of successful extensions: 1229
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of query: 289
length of database: 12,639,632
effective HSP length: 96
effective length of query: 193
effective length of database: 6,526,736
effective search space: 1259660048
effective search space used: 1259660048
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC134822.6