BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134521.7 + phase: 0
(183 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218449 204 2e-53
TC217608 similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6, parti... 94 4e-20
TC217609 homologue to UP|Q6QI38 (Q6QI38) LRRGT00170, partial (4%) 90 7e-19
BI469782 77 3e-15
TC226757 similar to GB|AAO63290.1|28950733|BT005226 At5g57910 {A... 31 0.37
TC212408 similar to UP|Q867T7 (Q867T7) P67-like superoxide-gener... 30 0.49
TC206186 weakly similar to GB|AAO42921.1|28416781|BT004675 At4g1... 30 0.49
TC231009 29 1.1
TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein,... 29 1.4
TC210456 similar to UP|Q9AU01 (Q9AU01) Phosphate transporter 1, ... 28 1.9
BM308345 28 2.4
TC204897 similar to UP|Q8W419 (Q8W419) Twin LOV protein 1, parti... 28 2.4
AW598595 similar to GP|18491139|gb| At2g25910/F17H15.6 {Arabidop... 28 2.4
TC221787 27 4.1
BG790184 homologue to GP|10177324|dbj auxin-induced protein IAA9... 27 4.1
TC230075 similar to UP|Q6T5H6 (Q6T5H6) Alpha-expansin 2, partial... 27 5.4
TC203683 homologue to UP|R37A_GOSHI (Q9XHE4) 60S ribosomal prote... 27 5.4
TC233584 similar to UP|Q8HKU2 (Q8HKU2) NADH dehydrogenase subuni... 27 5.4
TC226758 weakly similar to GB|AAO63290.1|28950733|BT005226 At5g5... 27 5.4
>TC218449
Length = 1052
Score = 204 bits (518), Expect = 2e-53
Identities = 107/187 (57%), Positives = 136/187 (72%), Gaps = 4/187 (2%)
Frame = +1
Query: 1 MKTLVFASNPILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPS 60
MKTL+ A N S SP KP + T K LNY FTTLKP+ASAKGFS+T PP+
Sbjct: 25 MKTLICAPNAAFNLSKLSP-WKPNFQAYHHHPTHK-LNYPFTTLKPRASAKGFSSTGPPT 198
Query: 61 TNKAKDDVPIKKNP----NNKNDDDDIPKEVMYRIIGRILFSTLVPMALGLSFLHLYGEL 116
A D+ K P NN +DDD++P+EVMYR+IGRILFS VPM LGL+ L L+GEL
Sbjct: 199 V--ASDNANTTKKPMRRKNNDDDDDELPQEVMYRLIGRILFSVGVPMGLGLALLGLFGEL 372
Query: 117 KDRHIFNAPLWMPFVTTLVFFGASGLGIAYGVLSTSLDAEREGSLLGFEEVEKNWDEMWQ 176
K++H+++APLW+PF+TTL+ FGAS LGIAYG LSTSLDAE+EGS LG E+++KNW EMWQ
Sbjct: 373 KEKHVWDAPLWLPFLTTLLTFGASSLGIAYGALSTSLDAEKEGSFLGVEQLQKNWVEMWQ 552
Query: 177 QENVSDD 183
++ ++
Sbjct: 553 EKQEDEN 573
>TC217608 similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6, partial (11%)
Length = 894
Score = 94.0 bits (232), Expect = 4e-20
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Frame = +1
Query: 25 KFPFSQPNTSKQLNYQFTTLKPQASA----KGFSNT--RPPSTNKAKDDVPIKKNPNNKN 78
KFPF + Q++Y F+ + P + KGF T + + K K D ++ +
Sbjct: 256 KFPFHRSEIHHQVHY-FSHIAPLGATFKEPKGFGPTPRKRKKSKKMKKDYGEGEDEEEEE 432
Query: 79 DDDD-------IPKEVMYRIIGRILFSTLVPMALGLSFLHLYGELKDRHIFNAPLWMPFV 131
+D++ IP+ V R++ R+ S +P+ +GL F L+ LK + P W+PF+
Sbjct: 433 EDEEEEPDRGVIPEVVTNRMMNRMAVSVGIPLGVGLLFFPLFYYLKVGLKIDVPTWVPFI 612
Query: 132 TTLVFFGASGLGIAYGVLSTSLDAEREGSLLGFEEVEKNWDEMWQ 176
+ FFG++ LG++YG++S+S D REGS G+ E +KNW WQ
Sbjct: 613 VSFFFFGSALLGVSYGIVSSSWDPLREGSFWGWTEAQKNWPVFWQ 747
>TC217609 homologue to UP|Q6QI38 (Q6QI38) LRRGT00170, partial (4%)
Length = 925
Score = 89.7 bits (221), Expect = 7e-19
Identities = 51/166 (30%), Positives = 88/166 (52%), Gaps = 14/166 (8%)
Frame = +1
Query: 25 KFPFSQPNTSKQLNYQFTTLKPQASA----KGFSNTRPPSTNKAKDDVPIKKNPNNKNDD 80
+FP + Q++Y F+ L P + KGF P+ K K ++++ ++D+
Sbjct: 283 RFPIYRSEIHHQVHY-FSHLAPICATFKEPKGFG----PTPKKKKKSKKMRRDYEEEDDE 447
Query: 81 DD----------IPKEVMYRIIGRILFSTLVPMALGLSFLHLYGELKDRHIFNAPLWMPF 130
++ IP+ V R++ R+ S +P+ +GL F + LK + P W+PF
Sbjct: 448 EEEEEEEPDRGVIPEVVTNRMMSRMAVSVGIPLGIGLLFFPFFYYLKVGLKIDVPTWVPF 627
Query: 131 VTTLVFFGASGLGIAYGVLSTSLDAEREGSLLGFEEVEKNWDEMWQ 176
+ + FFG++ LG++YG++S+S D REGS G+ E +KNW WQ
Sbjct: 628 IVSFFFFGSALLGVSYGIVSSSWDPLREGSFWGWTEAQKNWPVFWQ 765
>BI469782
Length = 297
Score = 77.4 bits (189), Expect = 3e-15
Identities = 40/67 (59%), Positives = 50/67 (73%), Gaps = 4/67 (5%)
Frame = +3
Query: 36 QLNYQFTTLKPQASAKGFSNTRPPSTNKAKDDVPIKKNP----NNKNDDDDIPKEVMYRI 91
+LNY FTTLKP+ASAKGFS+T PP+ A D+ K P NN +DDD++P+EVMY +
Sbjct: 30 KLNYPFTTLKPRASAKGFSSTGPPTV--ASDNANTTKKPMRRKNNDDDDDELPQEVMYLL 203
Query: 92 IGRILFS 98
IGRILFS
Sbjct: 204IGRILFS 224
>TC226757 similar to GB|AAO63290.1|28950733|BT005226 At5g57910 {Arabidopsis
thaliana;} , partial (12%)
Length = 1238
Score = 30.8 bits (68), Expect = 0.37
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
Frame = +1
Query: 9 NPILQSSTQSPICKPQKFPFSQPNTSKQLNY--QFTTLKPQASAKGFSNTRPPSTNKAKD 66
+PIL+ + + KPQK P SK NY + L+P A N+ +N A
Sbjct: 499 HPILKPQPKQQVVKPQKLKIQAPIISKGKNYNKKEPNLRPHHPASHL-NSNGRISNVA-- 669
Query: 67 DVPIKK 72
DVP+KK
Sbjct: 670 DVPLKK 687
>TC212408 similar to UP|Q867T7 (Q867T7) P67-like superoxide-generating NADPH
oxidase, partial (5%)
Length = 604
Score = 30.4 bits (67), Expect = 0.49
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 7 ASNPILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPSTNKAK 65
+S+P + SS SP C P S +S ++ F P++S S+T PPS++ +
Sbjct: 421 SSSPSI-SSDSSPSCVSSSGPSS*STSSVPCSFLFCASDPRSSYPSVSSTPPPSSSSPR 594
>TC206186 weakly similar to GB|AAO42921.1|28416781|BT004675 At4g16146
{Arabidopsis thaliana;} , partial (51%)
Length = 727
Score = 30.4 bits (67), Expect = 0.49
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 87 VMYRIIGRILFSTLVPMALGLSFLHLYGELKDR 119
+ Y I+ LFS L+P +L S LHLY L R
Sbjct: 28 LFYLIVSTSLFSPLIPFSLTFSSLHLYLPLTTR 126
>TC231009
Length = 929
Score = 29.3 bits (64), Expect = 1.1
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +3
Query: 5 VFASNPILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPSTNKA 64
V S P S+ +PI KP+ PF+ P + + N+ +N N+
Sbjct: 120 VSTSIPFHASNANAPIQKPKAMPFTVPPSFQIQNHTHHQFPLS------NNPIESLLNRF 281
Query: 65 KDDVPIKKNPNNKNDDDDI 83
+P N NN N +D++
Sbjct: 282 FHSIPDNNNNNNNNKNDNL 338
>TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(94%)
Length = 583
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 32 NTSKQLNYQFTTLKPQASAKGFSNTRPPSTNKAKDDVPIKKNPNNKNDDDDIPKE 86
+T + L + F++L PQ+ AKG + P+ K + P +K K IPKE
Sbjct: 7 STLQTLEFAFSSLFPQSMAKG---EKKPAEKKPAEKAPAEKTKAEKK----IPKE 150
>TC210456 similar to UP|Q9AU01 (Q9AU01) Phosphate transporter 1, partial
(29%)
Length = 617
Score = 28.5 bits (62), Expect = 1.9
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 6/44 (13%)
Frame = -3
Query: 72 KNPNNKN------DDDDIPKEVMYRIIGRILFSTLVPMALGLSF 109
KNPN DDD+IP +V + G+I T+ +ALG F
Sbjct: 231 KNPNAPTIAPSFPDDDEIPWQVDRNLAGKISAGTMNVVALGPKF 100
>BM308345
Length = 434
Score = 28.1 bits (61), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 10 PILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPS--TNKAKDD 67
PI ++S +S FP S P +K+ + F+ P + K + PP ++ +K
Sbjct: 161 PINKNSNKS------HFPLSPPK*NKKKIHSFSIFNPISPQKSNLSPYPPPKISSFSKPK 322
Query: 68 VPIKKNPNNKN 78
PI NP +N
Sbjct: 323 SPIPPNPTKEN 355
>TC204897 similar to UP|Q8W419 (Q8W419) Twin LOV protein 1, partial (59%)
Length = 1749
Score = 28.1 bits (61), Expect = 2.4
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 6/74 (8%)
Frame = +2
Query: 10 PILQSSTQSPICKPQKFPFSQPNTSKQLNYQFTTLKPQASAKGFSNTRPPSTN------K 63
P + S P P FPF+ NTS L + TT++ + S PPS++ +
Sbjct: 41 PSVASFLLCPPSSPFHFPFNNSNTS*WLPFYSTTIRLRYSP-------PPSSSHIIKRRR 199
Query: 64 AKDDVPIKKNPNNK 77
D + +K NNK
Sbjct: 200 FHDSIIHRKQNNNK 241
>AW598595 similar to GP|18491139|gb| At2g25910/F17H15.6 {Arabidopsis
thaliana}, partial (27%)
Length = 444
Score = 28.1 bits (61), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 14 SSTQSPICKPQKFPFSQPNTSKQL 37
SS P CKP K +PN SK+L
Sbjct: 338 SSYDLPTCKPSKLTRDEPNDSKEL 267
>TC221787
Length = 502
Score = 27.3 bits (59), Expect = 4.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 31 PNTSKQLNYQFTTLKPQASAKGFSNTRPPSTNKAKDDVPIKKNP 74
PN + T +P +S SN +TNKAK DV ++P
Sbjct: 214 PNVPPPPTFLITGSRPVSSKTSQSNETGETTNKAKKDVANVEDP 345
>BG790184 homologue to GP|10177324|dbj auxin-induced protein IAA9
{Arabidopsis thaliana}, partial (5%)
Length = 419
Score = 27.3 bits (59), Expect = 4.1
Identities = 22/62 (35%), Positives = 31/62 (49%), Gaps = 6/62 (9%)
Frame = +2
Query: 45 KPQASAKGFSNTRPPSTNKAKDDVPIKKNPNNKNDDDDIPKEVM------YRIIGRILFS 98
K A+ +GFS+T PPS NK P K P K + ++ ++II I+FS
Sbjct: 209 KTTATKRGFSDTLPPSQNKILR--PTSKFPTPK*EPTFHSMYMLTIFIKIHKIILFIIFS 382
Query: 99 TL 100
TL
Sbjct: 383 TL 388
>TC230075 similar to UP|Q6T5H6 (Q6T5H6) Alpha-expansin 2, partial (54%)
Length = 638
Score = 26.9 bits (58), Expect = 5.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 129 PFVTTLVFFGASGLGIAYGVLSTSLDAEREGSLLGFEEVEKNWDEMWQQE 178
P+ ++ + GLG V + S+ +GS G++ + +NW + WQ +
Sbjct: 280 PYFNLVLVYNVGGLG---DVKAVSI----KGSSTGWQPMTRNWGQNWQSK 408
>TC203683 homologue to UP|R37A_GOSHI (Q9XHE4) 60S ribosomal protein L37a,
complete
Length = 1919
Score = 26.9 bits (58), Expect = 5.4
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Frame = -2
Query: 31 PNTSKQLNYQFTTLKPQASAKGFSNTRPPSTNKAKDDVPIKKNPNNKNDDDDIPKEVMYR 90
PN ++ +P +S SN S+NKAK DV ++P + +IP++ +
Sbjct: 1027 PNVPPPPSFLIPRSRPLSSKTSQSNEAAESSNKAKKDVANVEDPFSA-PTYNIPEKPVTF 851
Query: 91 IIGRILFSTLVPMALGLS-------FLHLYGELKDRHIFNAPL 126
+ G +S ++ LG++ F L + K+ I+N L
Sbjct: 850 VEG-ASYSVVILAGLGIAAAAGYAVFKELIFQPKEYKIYNKAL 725
>TC233584 similar to UP|Q8HKU2 (Q8HKU2) NADH dehydrogenase subunit 4L,
partial (13%)
Length = 695
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 43 TLKPQASAKGFSNTRPPSTNKAKDDVPIKKNPNNKNDDDD 82
T+K AS+ + + S N +K KKN +N DDDD
Sbjct: 184 TMKVSASSSANTISTADSVNNSK----AKKNSDNNGDDDD 291
>TC226758 weakly similar to GB|AAO63290.1|28950733|BT005226 At5g57910
{Arabidopsis thaliana;} , partial (22%)
Length = 1463
Score = 26.9 bits (58), Expect = 5.4
Identities = 22/66 (33%), Positives = 33/66 (49%), Gaps = 2/66 (3%)
Frame = +2
Query: 9 NPILQSSTQSPICKPQKFPFSQPNTSKQLNY--QFTTLKPQASAKGFSNTRPPSTNKAKD 66
+PIL+ + + KPQK P SK NY + TL+P ++ SN R + +A
Sbjct: 632 HPILKPHPKQ-VVKPQKLKLQAPIISKGKNYSRKEPTLRPHPTSHLNSNGRISNVAEA-- 802
Query: 67 DVPIKK 72
P+KK
Sbjct: 803 --PLKK 814
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,184,894
Number of Sequences: 63676
Number of extensions: 109926
Number of successful extensions: 775
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of query: 183
length of database: 12,639,632
effective HSP length: 91
effective length of query: 92
effective length of database: 6,845,116
effective search space: 629750672
effective search space used: 629750672
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC134521.7