BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.6 + phase: 0
(1667 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 1055 0.0
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 1054 0.0
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 228 1e-59
TC232995 228 2e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 227 4e-59
TC213445 123 2e-48
BM143109 169 7e-42
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 168 2e-41
AI959950 167 4e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 160 3e-39
CO983516 153 5e-37
AI855982 147 3e-35
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 132 1e-30
NP004897 gag-protease polyprotein 131 2e-30
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 129 8e-30
CO982036 127 5e-29
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 125 2e-28
BI321712 122 1e-27
BG508993 120 5e-27
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 120 7e-27
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 1055 bits (2728), Expect = 0.0
Identities = 627/1673 (37%), Positives = 929/1673 (55%), Gaps = 42/1673 (2%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMEDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+M+++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKMAMLSNK----LEYLARKQKK------FLSKRGSYKNSKKEDQKG-------C 314
DE + + +L + L + R+QK F ++GS + KK D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKKSDEKPSHSKGIQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G + +ED ++ S+I EL S +EL E +
Sbjct: 1024 SDRDVNALTGRFES------------AEDSSDTDSEITFDELAISYRELCIKSEKILQQE 1167
Query: 435 TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
LK+ +L ++++ E+ ELKG +++ E+ KS+ + +KGS
Sbjct: 1168 AQLKKVIANLEAEKEAHEEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSD- 1317
Query: 494 KHEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ + G KN G +G+G++ + + ++ + K+
Sbjct: 1318 ----MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRTTMTEFVPA-KNSTG 1440
Query: 552 STFVPEGTNAITAVQSKPEASGSQAKITSKPENLKIKVM---------TKSDPKSQKIKI 602
+T + Q K + + K ++K T+S +K+
Sbjct: 1441 ATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMW 1620
Query: 603 LKRSEPVHQNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHP----- 657
+ + + V ++ + ++D + + T GVK ++N + + +
Sbjct: 1621 VPKHKIVSL-VVHTSLRASAKEDWYLDSGCSRHMT---GVKEFLVNIEPCSTSYVTFGDG 1788
Query: 658 ---KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDK 714
K+ G + + S+N V LV GL NL+SISQ CD G++V F+K+ C + N+ +
Sbjct: 1789 SKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSE 1968
Query: 715 SITFNGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVK 774
+ + +N Y + + CL S D+ +WH+R GH + R + KI V+
Sbjct: 1969 VLMKGSRSKDNCYLWTPQETSYSST-CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVR 2145
Query: 775 GLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYG 834
G+PN+ +CG CQ GK VK S + +TSR LELLH+DL GP+ SL G +Y
Sbjct: 2146 GIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYA 2325
Query: 835 LVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQYEKELKILKVRSDHGGEFENEPFELF 894
V+VDD+SR+TWV FI+ K EVF ++Q EK+ I ++RSDHG EFEN F F
Sbjct: 2326 YVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEF 2505
Query: 895 CEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNR 954
C GI HEFS+ TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR
Sbjct: 2506 CTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNR 2685
Query: 955 IYIRPMXEXTAYELFKGRRPNISNFHQLGCTXYILNTKDYLKKLNAKAQRGIFXGYSERS 1014
+ +R T YE++KGR+P + +FH G YIL ++ +K++ K+ GIF GYS S
Sbjct: 2686 VTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNS 2865
Query: 1015 KAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTE 1074
+AYRV+NS T+ V ES++V DD P K + + + D +D+ K E
Sbjct: 2866 RAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVR---------TSGDNVADTAKSAE 3018
Query: 1075 VESCPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGS 1134
AE++ A P + +P + + HP+ELIIG
Sbjct: 3019 -----------NAENSDSATDEPNINQPDK------------RPSIRIQKMHPKELIIGD 3129
Query: 1135 KDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPK 1194
+ TRS + S +S IEPK V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+
Sbjct: 3130 PNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPR 3309
Query: 1195 PSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLL 1254
P N+IGTKW+F+NK NE+G +TRNKARLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL
Sbjct: 3310 PEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLL 3489
Query: 1255 SYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPR 1314
A LYQMDVKSAFLNG + EE YV+QP GF D HPDHVY+LKK+LYGLKQAPR
Sbjct: 3490 GVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPR 3669
Query: 1315 AWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLM 1374
AWY+RL+ FL + + +G +D TLF + ++++I QIYVDDI+FG + + + F + M
Sbjct: 3670 AWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQM 3849
Query: 1375 QDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTL 1434
Q EFEMS++GEL +FLG+Q+ Q ++ +++ Q+KY K ++KKF +E+ TP L
Sbjct: 3850 QSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKL 4029
Query: 1435 SKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYL 1494
SK++ GT VDQ LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ SHL VKRI +Y+
Sbjct: 4030 SKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYV 4209
Query: 1495 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1554
GT++ G++Y D L+G+CDAD+AG +RKSTSG C +LG NLISW SK+Q +++
Sbjct: 4210 NGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSL 4389
Query: 1555 STAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIE 1614
STAEAEYI+A S C+QL+WMK L++Y + + + +YCDN +AI +SKNP+ HSR KHI+
Sbjct: 4390 STAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHID 4569
Query: 1615 IKHHFIRNYVQKGILDIQFIDTEHQWADIFTKPLSVERFEFIKKNLNMHFVSD 1667
I+HH+IR+ V ++ ++ +DTE Q ADIFTK L +FE ++ L + + D
Sbjct: 4570 IRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGICLLED 4728
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 1054 bits (2726), Expect = 0.0
Identities = 628/1668 (37%), Positives = 923/1668 (54%), Gaps = 42/1668 (2%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 49 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMEDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+M+++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKMAMLSNKLEYLARKQKK----------FLSKRGSYKNSKKEDQKG-------C 314
DE + + +L + + + K F ++GS K K+ D K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGS-KYQKRSDVKPSHSKGIQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH IA+CP K+ KG S S D +SE SD
Sbjct: 907 HGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD--- 1020
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G+ T +ED ++ S+I EL S ++L E +
Sbjct: 1021 SDRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQE 1164
Query: 435 TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
LK+ DL ++++ E+ ELKG +++ E+ KS+ + +KGS
Sbjct: 1165 AQLKKVIADLEAEKEAHKEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSDT 1317
Query: 494 KHEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ ++ G KN G +G+G++ + + ++ + K+
Sbjct: 1318 -----LDEVLLLG--------------KNAGNQRGLGFNPKSAGRTTMTEFVPA-KNRTG 1437
Query: 552 STFVPEGTNAITAVQSKPEASGSQAKITSKPENLKIKVM---------TKSDPKSQKIKI 602
+T + Q K + + K ++K T+S +K+
Sbjct: 1438 ATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMW 1617
Query: 603 LKRSEPVHQNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHP----- 657
+ + + V ++ + ++D + + T GVK +LN + + +
Sbjct: 1618 VPKHKAVSL-VVHTSLRASAKEDWYLDSGCSRHMT---GVKEFLLNIEPCSTSYVTFGDG 1785
Query: 658 ---KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDK 714
K+ G + + S+N V LV GL NL+SISQ CD G++V F+K+ C + N+ +
Sbjct: 1786 SKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSE 1965
Query: 715 SITFNGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVK 774
+ + +N Y + + CL S D+ +WH+R GH + R + KI V+
Sbjct: 1966 VLMKGSRSKDNCYLWTPQETSYSST-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVR 2142
Query: 775 GLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYG 834
G+PN+ +CG CQ GK VK S + +TSR LELLH+DL GP+ SL G +Y
Sbjct: 2143 GIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYA 2322
Query: 835 LVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQYEKELKILKVRSDHGGEFENEPFELF 894
V+VDD+SR+TWV FI+ K EVF ++Q EK+ I ++RSDHG EFEN F F
Sbjct: 2323 YVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEF 2502
Query: 895 CEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNR 954
C GI HEFS+ TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR
Sbjct: 2503 CTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNR 2682
Query: 955 IYIRPMXEXTAYELFKGRRPNISNFHQLGCTXYILNTKDYLKKLNAKAQRGIFXGYSERS 1014
+ +R T YE++KGR+P++ +FH G YIL ++ +K++ K+ GIF GYS S
Sbjct: 2683 VTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNS 2862
Query: 1015 KAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTE 1074
+AYRV+NS T+ V ES++V DD P K + + + DA
Sbjct: 2863 RAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADA-------------- 3000
Query: 1075 VESCPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGS 1134
A+S AE S +ES + IQ HP+ELIIG
Sbjct: 3001 ------------AKSGENAENSDSATDESNINQPDKRSSTRIQ------KMHPKELIIGD 3126
Query: 1135 KDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPK 1194
+ TRS + S +S IEPK V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+
Sbjct: 3127 PNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPR 3306
Query: 1195 PSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLL 1254
P N+IGTKW+F+NK NE+G +TRNKARLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL
Sbjct: 3307 PEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLL 3486
Query: 1255 SYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPR 1314
A LYQMDVKSAFLNG + EEVYV+QP GF D HPDHVY+LKK+LYGLKQAPR
Sbjct: 3487 GVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPR 3666
Query: 1315 AWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLM 1374
AWY+RL+ FL + + +G +D TLF + ++++I QIYVDDI+FG + + + F + M
Sbjct: 3667 AWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQM 3846
Query: 1375 QDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTL 1434
Q EFEMS++GEL +FLG+Q+ Q ++ +++ Q++Y K ++KKF +E+ TP L
Sbjct: 3847 QSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKL 4026
Query: 1435 SKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYL 1494
SK++ GT VDQ LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ SHLT VKRI +Y+
Sbjct: 4027 SKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYV 4206
Query: 1495 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1554
GT++ G++Y + L+G+CDAD+AG +RKSTSG C +LG NLISW SK+Q +++
Sbjct: 4207 NGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSL 4386
Query: 1555 STAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIE 1614
STAEAEYI+A S C+QL+WMK L++Y + + + +YCDN +AI +SKNP+ HSR KHI+
Sbjct: 4387 STAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHID 4566
Query: 1615 IKHHFIRNYVQKGILDIQFIDTEHQWADIFTKPLSVERFEFIKKNLNM 1662
I+HH+IR+ V ++ ++ +DTE Q ADIFTK L +FE ++ L +
Sbjct: 4567 IRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 228 bits (582), Expect = 1e-59
Identities = 108/153 (70%), Positives = 130/153 (84%)
Frame = -3
Query: 1174 LAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQE 1233
+AMQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G + RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1234 GIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDL 1293
GIDY ET+APVARLE IR+LL+Y LYQMDVKSAFLNG+++EEVYV+QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1294 KHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1326
P HVYKL+K+LYGLKQAPRAWY+R+SNFL++
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC232995
Length = 1009
Score = 228 bits (581), Expect = 2e-59
Identities = 108/173 (62%), Positives = 139/173 (79%)
Frame = +2
Query: 1284 VKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1343
V+QPPGFE P+HVYKL+K+LYGLKQAPRAWY+RLSNFL++ +F RG+VDTTLF +
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1344 KKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYV 1403
DIL+VQIYVDDIIFGSTN SLCKEFS MQ EFEMSMMGELK+FLG+QI Q++ G+++
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1404 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1456
+Q+KY KEL+K+F ++ K M+TPM C L K+++G +D K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 227 bits (578), Expect = 4e-59
Identities = 121/245 (49%), Positives = 159/245 (64%)
Frame = +3
Query: 1289 GFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDIL 1348
GFED + P HV+ + L L +F + D R K+ L
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*V------HF*FQMDSPEE*RTPHYSERLKKETFL 491
Query: 1349 IVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKY 1408
I+ IYVDDIIFG+T+ +CKEF +LM+D FE SM GELKF LG+QI Q G+++HQ KY
Sbjct: 492 IIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKY 671
Query: 1409 TKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFS 1468
TK LK+F++++ K M TPMH + + K++ G K Y GMI SL YLT+SRPDI+F
Sbjct: 672 TKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFV 851
Query: 1469 VCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1528
VCLCARFQS P+ SH+TAVKRI RYL GTTN L ++K ++ L+G+CD +AGD++ERK
Sbjct: 852 VCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERK 1031
Query: 1529 STSGN 1533
STS N
Sbjct: 1032 STSRN 1046
>TC213445
Length = 705
Score = 123 bits (308), Expect(2) = 2e-48
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = +1
Query: 1524 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI 1583
+ +R+STS C F+G L+SW SK+Q ++ +STAEAEYISA S Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1584 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1621
+ IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 90.1 bits (222), Expect(2) = 2e-48
Identities = 40/68 (58%), Positives = 52/68 (75%)
Frame = +2
Query: 1451 MIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1510
MI S LYL+ SRP I+FSVC+C R+Q++P+ESHL+ +KRI RYL G NLGL Y K+ Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1511 KLIGFCDA 1518
L+G+ DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 169 bits (429), Expect = 7e-42
Identities = 83/137 (60%), Positives = 107/137 (77%)
Frame = +1
Query: 1286 QPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1345
QPP ++ + P+HV+KLKK LYGLKQA RAWY+ LS FL+ F +G+VDT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1346 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1405
DIL+VQIYVDDIIFGSTN SLCK+FS+ MQ+EFEMSMM EL FFLG+QI Q+K G+++ Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1406 TKYTKELLKKFKLEDCK 1422
+KY K+L+ +F +E+ K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 168 bits (425), Expect = 2e-41
Identities = 91/222 (40%), Positives = 137/222 (60%), Gaps = 4/222 (1%)
Frame = +1
Query: 1443 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1502
VD +R +IGSL YL SRP+I F+V L +RF PR SH+ A KR+ R +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1503 LY---RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1559
L+ KS L+G+ D+D+ D + KST G + ++ +SK+Q IA+ST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1560 EYISAASCCTQLLWMKHQLEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHH 1618
EY++A+ Q +WM + LE+ ++ + + DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1619 FIRNYVQKGILDIQFIDTEHQWADIFTKPLSVERFEFIKKNL 1660
+IR+ V KG + +++ E Q AD+ TKP+ V RF+ I L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>AI959950
Length = 466
Score = 167 bits (423), Expect = 4e-41
Identities = 83/130 (63%), Positives = 104/130 (79%)
Frame = -1
Query: 1175 AMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEG 1234
AMQEEL+QFQ+N+V LV P +K ++G KW+F NKL+E G+V R KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 1235 IDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDLK 1294
IDY +TFA VARLE I +LLS+A + LYQMDVKSAFLNG++++EVYV+QPPGFE+
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 1295 HPDHVYKLKK 1304
HV+KL K
Sbjct: 31 LHQHVFKLNK 2
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 160 bits (406), Expect = 3e-39
Identities = 76/111 (68%), Positives = 91/111 (81%)
Frame = +3
Query: 1159 EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVT 1218
EPK ++EA+ DD WI+ MQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G +
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1219 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1269
RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+LL+YA LYQMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 153 bits (387), Expect = 5e-37
Identities = 75/120 (62%), Positives = 92/120 (76%)
Frame = +2
Query: 1241 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDLKHPDHVY 1300
F PVARLE+IRLLL A LYQMDVKSAFLNG + EEVYV+QP GF D HPDHVY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1301 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1360
+LKK+LYGLKQAPRAWY+RL+ L + + +G +D TLF + ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 147 bits (372), Expect = 3e-35
Identities = 78/161 (48%), Positives = 104/161 (64%)
Frame = +2
Query: 1127 PEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRN 1186
P + IIG TR + + + +S+IEPK ++EA+ DD WI+AMQEELNQF+RN
Sbjct: 2 PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181
Query: 1187 DVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1246
+VW LV KP +I TKWVFRNKL+E + +KARLVA+GY+Q +G+DY T+A +AR
Sbjct: 182 NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361
Query: 1247 LEAIRLLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQP 1287
L I + LSY LY SA L+G++ EVYV QP
Sbjct: 362 L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 132 bits (333), Expect = 1e-30
Identities = 66/131 (50%), Positives = 92/131 (69%)
Frame = -2
Query: 1192 VPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 1251
VP P K +G +WV+ K+ GEV R KARLVA+GY+Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1252 LLLSYAINHGIILYQMDVKSAFLNGVVEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQ 1311
L L+ A L+Q+D+K+AFL+G +EE++Y++QPPGF V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1312 APRAWYDRLSN 1322
+PRAW+ + S+
Sbjct: 46 SPRAWFGKFSH 14
>NP004897 gag-protease polyprotein
Length = 1923
Score = 131 bits (330), Expect = 2e-30
Identities = 127/484 (26%), Positives = 213/484 (43%), Gaps = 23/484 (4%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 91
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMEDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+M+++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDS 271
L V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKKEDQK-------GC 314
DE + + +L + L + R+QK F ++GS + K+ D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G +ED ++ S+I EL S +EL E +
Sbjct: 1024SDRDVNALTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKILQQE 1167
Query: 435 TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
LK+ +L ++++ E+ ELKG +++ E+ KS+ + +KGS
Sbjct: 1168AQLKKVIANLEAEKEAHEEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKGSDM 1320
Query: 494 KHEI 497
E+
Sbjct: 1321LDEV 1332
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 129 bits (325), Expect = 8e-30
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Frame = +2
Query: 1511 KLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQ 1570
+L G+CDAD+AG ++R+STSG C F+G NL+SW SK+Q +A S+AEAEY S A +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1571 LLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRNYVQKGIL 1629
L+W+K L++ + + +YCDN AA+ ++ NP+ H R KHIEI HFIR + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 1630 DIQFIDTEHQWADIFTKPLSVERFEFIKKNLNMH 1663
+FI + Q DI TK L + + + L +
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAY 475
>CO982036
Length = 674
Score = 127 bits (318), Expect = 5e-29
Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 4/207 (1%)
Frame = -2
Query: 1352 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1411
+YVD II GS+ +L + + + F + ++G+L +F+ I++ + ++ +T +
Sbjct: 640 VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1412 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1471
+K + + + +++PM TC LSK D+ YR ++G+L Y T RP+I F+V
Sbjct: 463 FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1472 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1528
+F S+P +SH T VKRI RYLKG+ + GL + ++ + + GFCDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1529 STSGNCQFLGENLIS-WASKRQATIAM 1554
STSG FLG NLIS W K+Q A+
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQVAFAV 26
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 125 bits (314), Expect = 2e-28
Identities = 60/134 (44%), Positives = 88/134 (64%)
Frame = +3
Query: 1154 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNE 1213
L S+ P T+ EAL GW AM +E+ + N W+LVP P K +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1214 QGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1273
G+V R KARLVA+GY+Q GI+Y +TF+PV L +RL L+ A L+Q+D+K+AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1274 LNGVVEEEVYVKQP 1287
L+G +EE++Y++QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>BI321712
Length = 399
Score = 122 bits (307), Expect = 1e-27
Identities = 58/124 (46%), Positives = 85/124 (67%)
Frame = -3
Query: 1352 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1411
+YVDD+IF N S+ +EF K M +EFEM+ MG + ++LGI++ Q +G+++ Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1412 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1471
+LKKFK++D + TPM LSK + G VD LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1472 CARF 1475
+R+
Sbjct: 19 VSRY 8
>BG508993
Length = 374
Score = 120 bits (301), Expect = 5e-27
Identities = 55/123 (44%), Positives = 83/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 1495 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1554
KGT + GL Y S +YKL+GFCD+D+AGD +RKST+G F+G+ + +W+SK+Q + +
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1555 STAEAEYISAASCCTQLLWMKHQLEDYQ-INANSIPIYCDNTAAICLSKNPILHSRAKHI 1613
T EAEY++A SC +W++ LE+ Q + S IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1614 EIK 1616
+ +
Sbjct: 364 DTR 372
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 120 bits (300), Expect = 7e-27
Identities = 57/122 (46%), Positives = 85/122 (68%)
Frame = +1
Query: 1348 LIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTK 1407
LIV +YVDD++ +A L +EF + M FEM+ +G + +FLGI+I QS+ V + Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1408 YTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1467
Y KE+LKKF++E+CK ++TPM+ +K D +D+ YR +IG L+YLTA+RPDILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1468 SV 1469
++
Sbjct: 553 AI 558
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,967,271
Number of Sequences: 63676
Number of extensions: 890722
Number of successful extensions: 4107
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 3953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4061
length of query: 1667
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1557
effective length of database: 5,635,272
effective search space: 8774118504
effective search space used: 8774118504
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC134322.6