TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134322.2 + phase: 0 /pseudo
         (840 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI498328                                                               49  7e-06
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial...    45  1e-04
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    43  7e-04
CF922488                                                               33  0.68
NP395547 reverse transcriptase [Glycine max]                           30  4.4
TC208939 UP|Q39830 (Q39830) BiP isoform A, complete                    29  7.6

>BI498328 
          Length = 335

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 25/62 (40%), Positives = 33/62 (52%)
 Frame = +1

Query: 668 KWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVV 727
           KW++  DG+SN  G G G  L  P    I  + R  F  +NN AEYEA   G++ A+   
Sbjct: 148 KWIVCFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFD 327

Query: 728 VK 729
           VK
Sbjct: 328 VK 333


>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
          Length = 724

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = +1

Query: 706 SSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYL 765
           ++NN AEY A+  GM+ ALK     +  + DS+LV  Q+ G+++ K+  L         L
Sbjct: 61  ATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKEL 240

Query: 766 TQKFVSFK 773
             KF SF+
Sbjct: 241 KDKFSSFQ 264


>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
          Length = 803

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +1

Query: 654 LVEMTAEKGSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSNNQAEY 713
           ++ +  EK   +  KW++  D +SN+ G G G  L  P    I  + R  F  +NN AEY
Sbjct: 7   IMALFEEKLDEDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEY 186

Query: 714 EA 715
           EA
Sbjct: 187 EA 192


>CF922488 
          Length = 741

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 61/221 (27%), Positives = 86/221 (38%)
 Frame = +1

Query: 308 ECARTTLI*IRCVPRMLIPCRA*INWYITLQGMTFLASWMLTRATTKFECT*RMKKRQLL 367
           ECA T  I* + V R+    R     +IT        SWM  +  T+     R+ KRQL 
Sbjct: 28  ECAWTIEI*TKPVQRISFLYRISTFSWITRPVFPNSPSWMDFQVITR*R*HQRIWKRQLS 207

Query: 368 *QTKLIIVTKVCHLG*GILELLFKDWWIKSSRVR*ARRSRCM*MTWW*NRQNKMIIKASS 427
                    ++C LG* +L       W   SR    RR R   MT  *N++ +    +  
Sbjct: 208 LLYGEPSAIRLCRLG*RMLGQHTSGPWWHYSRT*CTRR*RSTWMT*S*NQERRRNTLSIC 387

Query: 428 TRYLTCLRGTISSLT*RNVHLEYKQESF*ASCLLGGE*RSIQKSARPSWI*GVQLMRRRY 487
              L     T      ++V L    ES     +   E*R I+   + S      + R + 
Sbjct: 388 ESCLGDYVNTG*D*IPQSVCLR*NPESCSTLLIAREE*RWIRTR*K*SLRWPSHIQRSKS 567

Query: 488 KN*LGGLLHSRGFYHARLIKTYLFSNCCQKMKIFVGRKSVR 528
           K   GG   S   YH+ L    LFS CC ++ +  G   V+
Sbjct: 568 KVSWGG*TTS*DSYHS*LPLASLFSYCCARISLSNGTMIVK 690


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/56 (32%), Positives = 28/56 (49%)
 Frame = +2

Query: 337 LQGMTFLASWMLTRATTKFECT*RMKKRQLL*QTKLIIVTKVCHLG*GILELLFKD 392
           LQG     SW  T+ T + +   R+KK+QLL    + ++   C     +  LLF+D
Sbjct: 251 LQGNPSTVSWTDTQVTIRLQWILRIKKKQLLHVLSVFLLIAACRSVYVMPLLLFRD 418


>TC208939 UP|Q39830 (Q39830) BiP isoform A, complete
          Length = 2452

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 251  IQWQGLYNKESVRWVWRNKRQYK 273
            I ++G +N     W WRN RQ+K
Sbjct: 1589 INFEGHFNLRGTPWSWRNSRQFK 1521


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.358    0.156    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,235,798
Number of Sequences: 63676
Number of extensions: 530732
Number of successful extensions: 5048
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2708
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 2285
Number of HSP's gapped (non-prelim): 2951
length of query: 840
length of database: 12,639,632
effective HSP length: 105
effective length of query: 735
effective length of database: 5,953,652
effective search space: 4375934220
effective search space used: 4375934220
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)