BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.19 - phase: 0
(318 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin respons... 100 7e-22
TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mt... 97 7e-21
TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin... 88 4e-18
BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Ar... 78 5e-15
TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ... 70 1e-12
BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Ara... 66 2e-11
AW306556 weakly similar to GP|19352051|dbj auxin response factor... 65 4e-11
BU763867 similar to GP|10176918|dbj auxin response factor-like p... 64 1e-10
TC221169 similar to UP|ARFJ_ARATH (Q9SKN5) Auxin response factor... 63 2e-10
TC208982 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ... 62 3e-10
AI443940 homologue to GP|19352043|db auxin response factor 6b {O... 61 8e-10
TC208983 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ... 57 1e-08
BG238597 similar to GP|19352051|dbj auxin response factor 10 {Or... 54 1e-07
BM891533 similar to GP|10176918|db auxin response factor-like pr... 52 4e-07
CA801345 similar to GP|19352045|db auxin response factor 7a {Ory... 51 6e-07
TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin respon... 50 2e-06
TC213132 similar to UP|ARFK_ARATH (Q9ZPY6) Auxin response factor... 46 3e-05
BI469301 homologue to GP|19352043|db auxin response factor 6b {O... 44 1e-04
AI856586 44 1e-04
BF425345 similar to GP|22136676|gb| auxin response factor 1 {Ara... 44 1e-04
>TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin response
transcription factor 3 {Arabidopsis thaliana;} , partial
(32%)
Length = 687
Score = 100 bits (250), Expect = 7e-22
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Frame = +3
Query: 20 QIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDL---QRFRPFTICIIS 76
++W C G + +PK S V YFPQGHLE ++H L C +
Sbjct: 123 ELWHACAGPMISLPKKGSVVVYFPQGHLEQ--------HLHDFPLPASANIPSHVFCRVL 278
Query: 77 AVDLLADPHTDEVFAKLLLTPVTNNSCVQDPHEVPNCSNDDDVCDEVIDS-----FTRIL 131
V L A+ +DEV+ +++L P + + + +++ + V+ S F + L
Sbjct: 279 DVKLHAEEGSDEVYCQVVLVPESEQKLREGEFD---ADGEEEDAEAVMKSTTPHMFCKTL 449
Query: 132 ALTNVSKH-AFYIPRFCAENMFPPLG---MEVSQHLLVTDVHGEVWKFHHVCHGFAKRNV 187
++ S H F +PR AE+ FPPL SQ L+ D+HG+ W+F H+ G +R++
Sbjct: 450 TASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHL 629
Query: 188 FYTSEWASFVERKKLDVGDA 207
T+ W++FV +KKL GDA
Sbjct: 630 L-TTGWSAFVNKKKLVSGDA 686
>TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mtg10_20
{Arabidopsis thaliana;} , partial (31%)
Length = 878
Score = 97.4 bits (241), Expect = 7e-21
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 4/185 (2%)
Frame = +1
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDLQRFRPFTICIIS 76
++ ++W C G V +P+ RV+YFPQGH+E +S++ + + P +C +
Sbjct: 271 LYRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVI 450
Query: 77 AVDLLADPHTDEVFAKLLLTPVTNNSCVQDPHEVPNCSNDDDVCDEVIDSFTRILALTNV 136
V L A+P TDEVFA++ L P N QD + V + SF + L ++
Sbjct: 451 NVMLKAEPDTDEVFAQVTLLPEPN----QDENAVEKEGPPAAPPRFHVHSFCKTLTASDT 618
Query: 137 SKH-AFYIPRFCAENMFPPLGM---EVSQHLLVTDVHGEVWKFHHVCHGFAKRNVFYTSE 192
S H F + R A+ PPL M +Q L+ D+HG W+F H+ G ++++ S
Sbjct: 619 STHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLL-QSG 795
Query: 193 WASFV 197
W FV
Sbjct: 796 WNVFV 810
>TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin response
factor ARF17 {Arabidopsis thaliana;} , partial (17%)
Length = 958
Score = 88.2 bits (217), Expect = 4e-18
Identities = 52/145 (35%), Positives = 75/145 (50%), Gaps = 4/145 (2%)
Frame = +2
Query: 74 IISAVDLLADPHTDEVFAKLLLTPVTNNSCVQDPHEVPNCSNDDDVCDEVIDSFTRILAL 133
I SA+ P + +F LL+ D EV N +D D + + SF +IL
Sbjct: 59 ITSALSSALSPSSPAMFLLTLLSQSQQQPFQNDTKEV*NDDDDKDRENNNVISFAKILTP 238
Query: 134 TNVSK-HAFYIPRFCAENMFPPLGMEVSQH---LLVTDVHGEVWKFHHVCHGFAKRNVFY 189
++ + F +PRFCA++ FPPL L V D+HG W+F H+ HG R+ F+
Sbjct: 239 SDANNGDDFSVPRFCADSCFPPLDFRTDLPV*LLSVADIHGVEWRFRHIYHG-TPRHHFF 415
Query: 190 TSEWASFVERKKLDVGDAVVFMKNS 214
T W+ FV KKL GD V+F+K+S
Sbjct: 416 TIGWSKFVNHKKLVAGDTVIFVKDS 490
>BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Arabidopsis
thaliana}, partial (15%)
Length = 433
Score = 78.2 bits (191), Expect = 5e-15
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = +3
Query: 127 FTRILALTNVSKHA-FYIPRFCAENMFPPLGMEV---SQHLLVTDVHGEVWKFHHVCHGF 182
F + L ++ S H F +PR AE+ FPPL + SQ L+ D+HG WKF H+ G
Sbjct: 72 FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKKQRPSQELVAKDLHGVEWKFRHIYRGQ 251
Query: 183 AKRNVFYTSEWASFVERKKLDVGDAVVFMKNSTGKLFVGIRR 224
+R++ T+ W+ FV +K L GDAV+F++ G+L +GIRR
Sbjct: 252 PRRHLL-TTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRR 374
>TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
partial (26%)
Length = 658
Score = 70.5 bits (171), Expect = 1e-12
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Frame = +2
Query: 152 FPPLGMEVS---QHLLVTDVHGEVWKFHHVCHGFAKRNVFYTSEWASFVERKKLDVGDAV 208
FP L V Q++L DVHGE WKF H+ G +R++ T+ W++FV KKL GD++
Sbjct: 2 FPRLDYSVDPPVQNILAKDVHGETWKFRHIYRGTPRRHLL-TTGWSTFVNHKKLFAGDSI 178
Query: 209 VFMKNSTGKLFVGIRR 224
VF++ G L VGIRR
Sbjct: 179 VFLRAENGDLCVGIRR 226
>BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Arabidopsis
thaliana, partial (21%)
Length = 440
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/105 (35%), Positives = 59/105 (55%), Gaps = 4/105 (3%)
Frame = +1
Query: 124 IDSFTRILALTNVSKHA-FYIPRFCAENMFPPLGMEVS---QHLLVTDVHGEVWKFHHVC 179
+ SF ++L ++ S H F + R A P L M S Q L+ D+ G W+F H+
Sbjct: 79 VHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLQGFEWRFKHIF 258
Query: 180 HGFAKRNVFYTSEWASFVERKKLDVGDAVVFMKNSTGKLFVGIRR 224
G +R++ T+ W++FV K+L GD VF++ + G+L VG+RR
Sbjct: 259 RGQPRRHLL-TTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRR 390
>AW306556 weakly similar to GP|19352051|dbj auxin response factor 10 {Oryza
sativa}, partial (9%)
Length = 396
Score = 65.1 bits (157), Expect = 4e-11
Identities = 40/101 (39%), Positives = 61/101 (59%), Gaps = 17/101 (16%)
Frame = +1
Query: 220 VGIRRK-DAAEQKKDELE-------------KAVMEAVKLAEENKPFEIVYYPRGDDWCD 265
VG R K D E++++E+ K V EA +LA + PFE+VYYP+G W +
Sbjct: 70 VGTRIKVDEEEEEEEEVREVFSRDGRGKLSAKVVAEAAELAARSMPFEVVYYPKG-GWSE 246
Query: 266 FVVDGNIVDESMKIQWNPRMRVKM--KTDKSSRIPY-QGTI 303
FVV V+E+M ++W+ M+VK+ +TD SSR+ + QGT+
Sbjct: 247 FVVKTEAVNEAMSVEWSHGMKVKIATETDDSSRVSWCQGTV 369
>BU763867 similar to GP|10176918|dbj auxin response factor-like protein
{Arabidopsis thaliana}, partial (8%)
Length = 452
Score = 63.5 bits (153), Expect = 1e-10
Identities = 30/94 (31%), Positives = 57/94 (59%), Gaps = 4/94 (4%)
Frame = +1
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDLQRF--RPFTICI 74
++ ++W+ C G+ V +P++ RV+YFPQGHLE ++ + N L++ + +C
Sbjct: 130 LYTELWRACAGSFVYVPRVDDRVFYFPQGHLEQVAAYTQNQPDSHLEIPVYDLPSKILCK 309
Query: 75 ISAVDLLADPHTDEVFAKLLLTPVT--NNSCVQD 106
I V+L A+ ++DEV+A++ L P +N C ++
Sbjct: 310 IMNVELKAEAYSDEVYAQVTLVPEVQKDNLCFEE 411
>TC221169 similar to UP|ARFJ_ARATH (Q9SKN5) Auxin response factor 10, partial
(18%)
Length = 562
Score = 62.8 bits (151), Expect = 2e-10
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Frame = +2
Query: 237 KAVMEAVKLAEENKPFEIVYYPRGDDWCDFVVDGNIVDESMKIQWNPRMRVKM--KTDKS 294
+AV+EA LA +PFE+VYYPR +F V N+V +++++W P MR KM +T+ S
Sbjct: 110 EAVIEAATLAANMQPFEVVYYPRASA-PEFCVKANLVRAALQVRWCPGMRFKMPFETEDS 286
Query: 295 SRIP-YQGTITTVSRT-----SNLWRMLQV 318
SRI + GTI++V+ ++ WR+LQV
Sbjct: 287 SRISWFMGTISSVNFADPRWPNSPWRLLQV 376
>TC208982 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
partial (19%)
Length = 675
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/91 (42%), Positives = 56/91 (60%), Gaps = 9/91 (9%)
Frame = +2
Query: 237 KAVMEAVKLAEENKPFEIVYYPRGDDWCDFVVDGNIVDESMKIQWNPRMRVKM--KTDKS 294
++V EAV LA N+PFE+VYYPR + +F + + V +M+IQW+ MR KM +T+ S
Sbjct: 122 ESVREAVTLAASNQPFEVVYYPRANT-PEFCIRTSAVRGAMRIQWSSGMRFKMPFETEDS 298
Query: 295 SRIP-YQGTITTVSRTSNL------WRMLQV 318
SRI + GTI +V + WR+LQV
Sbjct: 299 SRISWFMGTIASVQLLDPIRWPNSPWRLLQV 391
>AI443940 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (14%)
Length = 391
Score = 60.8 bits (146), Expect = 8e-10
Identities = 37/117 (31%), Positives = 58/117 (48%), Gaps = 4/117 (3%)
Frame = +3
Query: 69 PFTICIISAVDLLADPHTDEVFAKLLLTPVTNNSCVQDPHEVPNCSNDDDVCDEVIDSFT 128
P IC + + + AD TDEV+A++ L P+ Q+ +E + + + F
Sbjct: 48 PQLICQLHNMTMHADVETDEVYAQMTLQPLNP----QEQNEAYLPAELGTASKQPTNYFC 215
Query: 129 RILALTNVSKHA-FYIPRFCAENMFPPLGMEV---SQHLLVTDVHGEVWKFHHVCHG 181
+ L ++ S H F +PR AE +FPPL +Q L+ D+HG WKF H+ G
Sbjct: 216 KTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRG 386
>TC208983 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
partial (26%)
Length = 958
Score = 56.6 bits (135), Expect = 1e-08
Identities = 41/109 (37%), Positives = 60/109 (54%), Gaps = 9/109 (8%)
Frame = +1
Query: 219 FVGIRRKDAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWCDFVVDGNIVDESMK 278
F G R+++ K ++V EA LA N+ FE+VYYPR + +F + + V +M+
Sbjct: 52 FSGFMREESGRAKVSG--ESVREAGTLAASNQAFEVVYYPRANT-PEFCIRTSAVRGAMR 222
Query: 279 IQWNPRMRVKM--KTDKSSRIP-YQGTITTVSRTSNL------WRMLQV 318
IQW MR KM +T+ SSRI + GTI +V + WR+LQV
Sbjct: 223 IQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQV 369
>BG238597 similar to GP|19352051|dbj auxin response factor 10 {Oryza sativa},
partial (5%)
Length = 487
Score = 53.5 bits (127), Expect = 1e-07
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 4 NQYHHQQQQQPSHVH----PQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHA 50
+ Y H +++ V PQ+W C G VQ+P ++++VYYFPQGH EHA
Sbjct: 319 DDYIHGHKREIKEVERCLDPQLWHACAGGMVQMPTVNTKVYYFPQGHAEHA 471
>BM891533 similar to GP|10176918|db auxin response factor-like protein
{Arabidopsis thaliana}, partial (11%)
Length = 306
Score = 52.0 bits (123), Expect = 4e-07
Identities = 24/62 (38%), Positives = 36/62 (57%)
Frame = +3
Query: 39 VYYFPQGHLEHASSSSSNAYIHSLDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPV 98
V+YFPQGH+E +S++ + + P +C + V L A+P TDEVFA++ L P
Sbjct: 3 VFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPE 182
Query: 99 TN 100
N
Sbjct: 183 PN 188
>CA801345 similar to GP|19352045|db auxin response factor 7a {Oryza sativa},
partial (6%)
Length = 424
Score = 51.2 bits (121), Expect = 6e-07
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 11 QQQPSHVHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEH-ASSSSSNAYIHSLDLQRFRP 69
+++ ++P++WQ C G V +P + V YFPQGH E A+S + + + +
Sbjct: 197 EEKKKSINPELWQACAGPLVNLPPSGTHVIYFPQGHSEQVAASLNKDPHSQIPNYPNLPS 376
Query: 70 FTICIISAVDLLADP 84
+C++ + LLADP
Sbjct: 377 KLLCLLHNLTLLADP 421
>TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin response factor 1
{Arabidopsis thaliana;} , partial (54%)
Length = 1772
Score = 49.7 bits (117), Expect = 2e-06
Identities = 40/145 (27%), Positives = 70/145 (47%), Gaps = 12/145 (8%)
Frame = +3
Query: 181 GFAKRNVFYTSEWASFVERKKLDVGDAVVFMKNSTGKLFVGIRR--KDAAEQKKDELEKA 238
G KR++ T+ W+ FV KKL GDA +F++ G+L VG+RR + + +
Sbjct: 165 GQPKRHLL-TTGWSVFVSSKKLAAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISSH 341
Query: 239 VMEAVKLAEENKP------FEIVYYPRGDDWCDFVVDGN--IVDESMKIQWNPRMRVKMK 290
M LA + F + Y PR +F+V N + +S K+ R +++ +
Sbjct: 342 SMHLGVLATASHAIATGTLFSVFYKPR-TSRSEFIVSVNKYLEVQSHKLSVGMRFKMRFE 518
Query: 291 TDKSSRIPYQGTITTV--SRTSNLW 313
D+ + GTI V +++S++W
Sbjct: 519 GDEIPERRFSGTIVGVGDNKSSSVW 593
>TC213132 similar to UP|ARFK_ARATH (Q9ZPY6) Auxin response factor 11, partial
(6%)
Length = 443
Score = 45.8 bits (107), Expect = 3e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSS 53
++ Q+W+ C G V +P+ RV+YFPQGH+E +S
Sbjct: 332 LYTQLWKLCAGPLVDVPRQGERVFYFPQGHMEQLQAS 442
>BI469301 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (15%)
Length = 422
Score = 43.9 bits (102), Expect = 1e-04
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 127 FTRILALTNVSKHA-FYIPRFCAENMFPPLGMEV---SQHLLVTDVHGEVWKFHHVCHG 181
F + L ++ S H F +PR AE +FPPL +Q L+ D+H WKF H+ G
Sbjct: 243 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRG 419
>AI856586
Length = 321
Score = 43.9 bits (102), Expect = 1e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Frame = +1
Query: 190 TSEWASFVERKKLDVGDAVVFMKNSTGKLFVGIRRKDAAEQKKDELEKAVME-------- 241
T+ W+ FV K+L GD+V+F+++ L +GIRR A +++ L +V+
Sbjct: 10 TTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRR---ANRQQPALSSSVISSDSMHIGI 180
Query: 242 ---AVKLAEENKPFEIVYYPR 259
A A N PF I Y PR
Sbjct: 181 LAAAAHAAANNSPFTIFYNPR 243
>BF425345 similar to GP|22136676|gb| auxin response factor 1 {Arabidopsis
thaliana}, partial (5%)
Length = 305
Score = 43.5 bits (101), Expect = 1e-04
Identities = 15/32 (46%), Positives = 22/32 (67%)
Frame = +3
Query: 17 VHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLE 48
++ ++W C G V +P+ RVYYFPQGH+E
Sbjct: 204 LYKELWHACAGPLVTLPREGERVYYFPQGHME 299
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,110,134
Number of Sequences: 63676
Number of extensions: 273306
Number of successful extensions: 1648
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of query: 318
length of database: 12,639,632
effective HSP length: 97
effective length of query: 221
effective length of database: 6,463,060
effective search space: 1428336260
effective search space used: 1428336260
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC134322.19