TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134049.2 - phase: 0 
         (170 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU927343                                                               32  0.15
BG653749                                                               28  1.6
TC225149 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S...    28  2.1
TC227512 similar to GB|AAQ89615.1|37202000|BT010593 At3g17205 {A...    28  2.8
TC223356 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {A...    27  4.7
TC220252 weakly similar to GB|AAR24736.1|38603986|BT010958 At4g3...    27  4.7
TC224671 similar to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, p...    27  6.2
CO980832                                                               26  8.1
TC227958 similar to UP|O48721 (O48721) Expressed protein, partia...    26  8.1

>BU927343 
          Length = 451

 Score = 32.0 bits (71), Expect = 0.15
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -3

Query: 34  AEEAAKRGFEINNQDGWSQHATCHVLQYECRFREAVEFMEECSPSWN 80
           + ++++RG E+N Q G S  AT  +L   CR R+ +  ++E +P  N
Sbjct: 179 SSQSSRRGLELNPQPGLSNAATVQLL---CRARDPITCLQEKTPPPN 48


>BG653749 
          Length = 417

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (62%)
 Frame = +2

Query: 38  AKRGFEINNQDGWSQHATC 56
           +KR F I NQ  W QH TC
Sbjct: 161 SKRSFPIPNQRTWEQHRTC 217


>TC225149 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
           (Fragment), partial (97%)
          Length = 768

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = -3

Query: 67  EAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLE 100
           EA+  ++ C P     L   L H W+ V LC LE
Sbjct: 130 EALHLLQRCLPVLRLRLRLRLRHCWFVVLLCELE 29


>TC227512 similar to GB|AAQ89615.1|37202000|BT010593 At3g17205 {Arabidopsis
           thaliana;} , partial (17%)
          Length = 541

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 38  AKRGFEINNQDGWSQHATCHVLQ 60
           AK+ F+I     WS  ATCH LQ
Sbjct: 484 AKQRFKILESKQWSPRATCHKLQ 416


>TC223356 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {Arabidopsis
           thaliana;} , partial (96%)
          Length = 705

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 76  SPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRV-LEVYDNYIWKELDKTDATVPEVYLNA 134
           +P WN  L+F LT               P+  + LEV+D  +WK  DK    +   YLN 
Sbjct: 210 NPVWNEELNFTLTE--------------PLGVLNLEVFDKDLWKADDK----MGNSYLNL 335

Query: 135 VALLLRLCVRDELE 148
             L+    +RD L+
Sbjct: 336 QPLISAARLRDILK 377


>TC220252 weakly similar to GB|AAR24736.1|38603986|BT010958 At4g32870
           {Arabidopsis thaliana;} , partial (41%)
          Length = 867

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 10/24 (41%), Positives = 12/24 (49%), Gaps = 1/24 (4%)
 Frame = +2

Query: 79  WNSFLSFMLTHNWWHVALCY-LEG 101
           W +   F   H WW +  CY LEG
Sbjct: 131 WTALEDFCNLHKWWPIETCYQLEG 202


>TC224671 similar to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, partial (87%)
          Length = 1803

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 13/31 (41%), Positives = 21/31 (66%)
 Frame = +3

Query: 31   MKEAEEAAKRGFEINNQDGWSQHATCHVLQY 61
            +++AEEAAKR  +   Q G S + TC V+++
Sbjct: 1239 IEDAEEAAKRLMQEAYQRGSSDNITCVVVRF 1331


>CO980832 
          Length = 838

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +3

Query: 59  LQYECRFREAVEFMEECSPSWNSFLSFMLTHN 90
           LQ + +  E  +F   C  +WN+  SF+  HN
Sbjct: 288 LQLQTKI*EVTKFKNLCKFNWNNCSSFIDNHN 383


>TC227958 similar to UP|O48721 (O48721) Expressed protein, partial (19%)
          Length = 704

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 22/91 (24%), Positives = 32/91 (34%), Gaps = 4/91 (4%)
 Frame = +3

Query: 23  FPLLELGQMKEAEEAAKRGFEINNQDGWSQHATCHVLQYECRFREAVEFMEECSPS---- 78
           +P       +  E  + RGFE+   + +      HV     +   A   +   SPS    
Sbjct: 60  YPXSAKASNEXEEXXSNRGFEVTRMNTYXTVPVQHVGHTVVKIALAAPVVTVASPSSIRA 239

Query: 79  WNSFLSFMLTHNWWHVALCYLEGNAPMQRVL 109
           W + LS      W +   C  E  A M R L
Sbjct: 240 WKNLLS---DSEWSNSVACIGETTAAMARSL 323


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,472,539
Number of Sequences: 63676
Number of extensions: 124105
Number of successful extensions: 631
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of query: 170
length of database: 12,639,632
effective HSP length: 90
effective length of query: 80
effective length of database: 6,908,792
effective search space: 552703360
effective search space used: 552703360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)