BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.15 + phase: 0 /pseudo
(300 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 51 6e-07
BM307983 43 2e-04
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 43 2e-04
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 43 2e-04
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 42 4e-04
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 40 0.001
CO983516 38 0.005
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 37 0.008
BF595216 34 0.092
BQ272677 similar to GP|10177548|dbj receptor protein kinase-like... 33 0.12
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 33 0.16
BG359558 29 2.3
TC217816 29 3.0
TC203712 homologue to UP|SPE1_SOYBN (Q39827) Arginine decarboxyl... 28 3.9
AW759450 28 5.0
TC227273 weakly similar to UP|KGS9_YEAST (P43637) Probable serin... 28 6.6
TC218108 UP|NO26_SOYBN (P08995) Nodulin-26 (N-26), complete 27 8.6
TC208687 UP|Q9FQE7 (Q9FQE7) Glutathione S-transferase GST 11 , ... 27 8.6
TC228730 27 8.6
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 51.2 bits (121), Expect = 6e-07
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = +3
Query: 1 SYYISTSLKTVLLKFGSTS*IASLRT*QHLGANISPFWKETH*L*MSLQD*VQ-VWWTHR 59
++Y L ++ S*+ Q+L + S + +H*L*+ QD* + +W T
Sbjct: 33 TFYCEAGLNFSSMETSHAS*L*CSNGKQNLDIDFSSIREGSH*L*VGFQD*RKFIWDTE* 212
Query: 60 TI*SSPCCGVLHLDWRY*LYGNFLTG----VLFLLLAIATTQY*HLHQLDVNDTFIHGEL 115
+ C G+ W *L+ NF + + L+L IA T + L Q+D+N+ F+HG L
Sbjct: 213 VQI*AGC*GISSEVW-L*LFRNFFSSD*AVTIRLILFIALTNHWPLQQVDINNAFLHGLL 389
Query: 116 DEKVYMVVPP 125
E+VYMV P
Sbjct: 390 TEEVYMVQLP 419
>BM307983
Length = 406
Score = 42.7 bits (99), Expect = 2e-04
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 101 LHQLDVNDTFIHGELDEKVYMVVPPFY-SHHALNQVYTDS*SLFMVSIRSASYSLPCPSS 159
+HQ DV + F+HG L+E+VYM +PP Y + + N+V +L+ + ++ +
Sbjct: 194 MHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGRFTQA 373
Query: 160 FLTSLGYAQSQ 170
L SLGY QSQ
Sbjct: 374 ML-SLGYKQSQ 403
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/37 (48%), Positives = 26/37 (69%)
Frame = -2
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP 125
L LA+A + LHQLD+ + F+HG+L+E +YM PP
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPP 116
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 42.7 bits (99), Expect = 2e-04
Identities = 21/43 (48%), Positives = 30/43 (68%)
Frame = +3
Query: 82 FLTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVP 124
FLT V L LA+A ++ LHQLD+ + F+HG+L+E +YM P
Sbjct: 279 FLTTVR-LFLAMAAIRHWPLHQLDIKNAFLHGDLEEDIYMEQP 404
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 41.6 bits (96), Expect = 4e-04
Identities = 32/112 (28%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSI 147
LLL +A L+Q+DV F++G L+E+VY+ P F + VY +L+ +
Sbjct: 3478 LLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQ 3657
Query: 148 RSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPG 199
++ + FLT GY + +LF K + +N + I+VD+++ G
Sbjct: 3658 APRAW-YERLTEFLTQQGYRKGGIDKTLFVK-QDAENLMIAQIYVDDIVFGG 3807
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/112 (27%), Positives = 55/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSI 147
LLL +A L+Q+DV F++G L+E+ Y+ P F + VY +L+ +
Sbjct: 3481 LLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQ 3660
Query: 148 RSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPG 199
++ + FLT GY + +LF K + +N + I+VD+++ G
Sbjct: 3661 APRAW-YERLTEFLTQQGYRKGGIDKTLFVK-QDAENLMIAQIYVDDIVFGG 3810
>CO983516
Length = 724
Score = 38.1 bits (87), Expect = 0.005
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +2
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSI 147
LLL +A L+Q+DV F++G L+E+VY+ P F + VY +L+ +
Sbjct: 398 LLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVYRLKKALYGLKQ 577
Query: 148 RSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLI 196
++ + LT GY + +LF K + +N + I+VD+++
Sbjct: 578 APRAW-YERLTELLTQQGYRKGGIDKTLFVK-QDAENLMIAQIYVDDIV 718
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 37.4 bits (85), Expect = 0.008
Identities = 36/139 (25%), Positives = 63/139 (44%), Gaps = 15/139 (10%)
Frame = +1
Query: 78 LYGNFLTGV---------LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYS 128
+YG TG + LL ++A + L LD + F+HG L+E+VYM P
Sbjct: 79 VYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFLHGYLEEEVYMEQP---- 246
Query: 129 HHALNQVYTDS*SLFMVSIRSASYSL---PCPSSFL---TSLGYAQSQSGHSLFTKIHNQ 182
L V S + + + Y L P FL ++ Y ++ HS+F H+
Sbjct: 247 ---LGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSHEADHSVF-YCHSP 414
Query: 183 KNFTVILIFVDNLILPGND 201
+ ++++VD++ + G+D
Sbjct: 415 QGCIYLIVYVDDIGITGSD 471
>BF595216
Length = 421
Score = 33.9 bits (76), Expect = 0.092
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 101 LHQLDVNDTFIHGELDEKVYMVVPP 125
+ QLDVN+ F++G L E+VYM PP
Sbjct: 291 IQQLDVNNAFLNGILQEEVYMQQPP 365
>BQ272677 similar to GP|10177548|dbj receptor protein kinase-like protein
{Arabidopsis thaliana}, partial (1%)
Length = 421
Score = 33.5 bits (75), Expect = 0.12
Identities = 18/44 (40%), Positives = 24/44 (53%)
Frame = +1
Query: 224 VFQCANVNMAQIY*LKLVSWVLNGCLHPCLCLRTRLPLKSLLLW 267
+FQC + I L + GCL+P +RTR PLK+ LLW
Sbjct: 274 LFQCPLFSTTPI----LTTSTSLGCLNPLASIRTRSPLKTTLLW 393
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 33.1 bits (74), Expect = 0.16
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -3
Query: 86 VLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP 125
V+ +LLA + L+Q+DV F++G + E+VY+ PP
Sbjct: 236 VIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPP 117
>BG359558
Length = 320
Score = 29.3 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 19/26 (72%)
Frame = +3
Query: 151 SYSLPCPSSFLTSLGYAQSQSGHSLF 176
S+SLPC ++L SLG+ QS+ +L+
Sbjct: 225 SHSLPCIEAWLRSLGFCQSKEDRALW 302
>TC217816
Length = 1960
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 221 VLFVFQCANVNMA----QIY*LKLVSWVLNGCLHPCLCLRTRLPLKSLLLWTL 269
VL V+ A V++ ++ L+L++ +LN C+ C +L + +LL W L
Sbjct: 1483 VLMVWDMARVSLTFYLTKLLMLELLTGILNTCMTDLTCTLHQLTITALLSWVL 1641
>TC203712 homologue to UP|SPE1_SOYBN (Q39827) Arginine decarboxylase (ARGDC)
(ADC) , partial (19%)
Length = 761
Score = 28.5 bits (62), Expect = 3.9
Identities = 21/54 (38%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Frame = +3
Query: 245 LNGCLHPCLCLRTRL-PLKSLLLWTLADVLVSSGSFYI*LQYVLTYSLQHISLA 297
L CL CLCL L L LLL+ L ++ SSG Y+ L+ L + +S+A
Sbjct: 360 LTECLICCLCLPLWLMMLLLLLLFLLVKMMKSSGLIYV-LEICLAVVIPFVSVA 518
>AW759450
Length = 374
Score = 28.1 bits (61), Expect = 5.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 141 SLFMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSL 175
SLF+ ++S + + C S SL + Q GHSL
Sbjct: 94 SLFLCYVKSQHHPILCNFSAFVSLCFIQGHEGHSL 198
>TC227273 weakly similar to UP|KGS9_YEAST (P43637) Probable
serine/threonine-protein kinase YGL179C , partial (8%)
Length = 2373
Score = 27.7 bits (60), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 3/37 (8%)
Frame = -2
Query: 222 LFVFQCANVNMAQIY*LKLVSWVLN---GCLHPCLCL 255
+F+FQ +N+ I + W LN G HPCL L
Sbjct: 1025 VFIFQLVGINLPDI---SSIRWYLNAMRGGFHPCLVL 924
>TC218108 UP|NO26_SOYBN (P08995) Nodulin-26 (N-26), complete
Length = 1122
Score = 27.3 bits (59), Expect = 8.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 243 WVLNGCLHPCLCLRTRLPL 261
W C H C CL ++PL
Sbjct: 371 WPFQSCCHHCFCLHQKIPL 427
>TC208687 UP|Q9FQE7 (Q9FQE7) Glutathione S-transferase GST 11 , complete
Length = 1169
Score = 27.3 bits (59), Expect = 8.6
Identities = 15/46 (32%), Positives = 23/46 (49%)
Frame = +3
Query: 213 IVLCGSFLVLFVFQCANVNMAQIY*LKLVSWVLNGCLHPCLCLRTR 258
++LC ++ LF+F I+*+ L WV+N L L TR
Sbjct: 105 LILCNTYCKLFIF---------IF*ISLYFWVINSIFIQHLGLETR 215
>TC228730
Length = 1544
Score = 27.3 bits (59), Expect = 8.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +3
Query: 67 CGVLHLDWRY*LYGNFLTGVLFLL-------LAIATTQY*HLHQLDVNDTFIHGELDEKV 119
C ++ D RY L + +TG++ L L + T * LHQ + IHG +DE V
Sbjct: 354 CLLIPQDCRYSLLLHLITGIIENLAKSVASCLTVTTYHC*SLHQR*YSVLTIHGSMDEIV 533
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.351 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,076,056
Number of Sequences: 63676
Number of extensions: 260595
Number of successful extensions: 2481
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2477
length of query: 300
length of database: 12,639,632
effective HSP length: 97
effective length of query: 203
effective length of database: 6,463,060
effective search space: 1312001180
effective search space used: 1312001180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 59 (27.3 bits)
Medicago: description of AC134049.15