BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133780.7 + phase: 0
(192 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215097 weakly similar to GB|AAM91058.1|22136544|AY129472 AT5g1... 329 4e-91
TC215096 similar to GB|AAM91058.1|22136544|AY129472 AT5g14030/MU... 258 3e-81
AW705748 similar to PIR|T50823|T508 ribosomal protein S26 homolo... 44 5e-05
TC234680 similar to UP|Q9AT29 (Q9AT29) BZip transcription factor... 28 3.4
CD410607 27 4.5
BQ094412 27 4.5
NP005445 cytochrome oxidase subunit I 27 4.5
TC229883 similar to GB|BAC20813.1|23617133|AP005183 transcriptio... 27 7.6
TC219535 27 7.6
TC218635 similar to UP|Q9LHE6 (Q9LHE6) Arabidopsis thaliana geno... 26 9.9
TC213605 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pr... 26 9.9
>TC215097 weakly similar to GB|AAM91058.1|22136544|AY129472 AT5g14030/MUA22_2
{Arabidopsis thaliana;} , partial (87%)
Length = 1069
Score = 329 bits (844), Expect = 4e-91
Identities = 168/194 (86%), Positives = 181/194 (92%), Gaps = 2/194 (1%)
Frame = +3
Query: 1 MADPISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGT 60
MADPI+K LIAF L+AS LLC ASSDVPFIVAHKKASLNRLK+GAERVSVTIDIYNQGT
Sbjct: 153 MADPIAKALIAFALLASLLLCLQASSDVPFIVAHKKASLNRLKSGAERVSVTIDIYNQGT 332
Query: 61 STAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIK 120
STAYDVSLSDDSW SD F VISG+TSK+WE+LDAGG++SHTFELEAKSKGVFAGEPA+IK
Sbjct: 333 STAYDVSLSDDSWPSDAFDVISGSTSKSWERLDAGGIISHTFELEAKSKGVFAGEPAVIK 512
Query: 121 FRVPTSAALQEAYSTPILPLDVLADRAPEKKFEW--RLLAKYGSLISVISIIVMFVYLVA 178
FRVPT AALQEAYSTPILPLDVL+DR PEKKFEW RLLAKYGSLISVISI+V+FVYLVA
Sbjct: 513 FRVPTKAALQEAYSTPILPLDVLSDRPPEKKFEWAKRLLAKYGSLISVISIMVLFVYLVA 692
Query: 179 TPSKSGAKGSKKKR 192
+PSKS AKGSKKKR
Sbjct: 693 SPSKSSAKGSKKKR 734
>TC215096 similar to GB|AAM91058.1|22136544|AY129472 AT5g14030/MUA22_2
{Arabidopsis thaliana;} , partial (82%)
Length = 841
Score = 258 bits (660), Expect(2) = 3e-81
Identities = 128/151 (84%), Positives = 141/151 (92%)
Frame = +2
Query: 1 MADPISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGT 60
MADPI+K LIAF L+AS LLCSHASSDVPFIVAHKKASLNRLK+GAERVSVTIDI+NQGT
Sbjct: 137 MADPIAKALIAFALLASLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGT 316
Query: 61 STAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIK 120
STAYDVSLSDDSW SD F VISG+TSK+WE+LDAGG+LSHTFELEAKSKGVFAGEPA+IK
Sbjct: 317 STAYDVSLSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIK 496
Query: 121 FRVPTSAALQEAYSTPILPLDVLADRAPEKK 151
FRVPT +ALQEAYSTPILPLDVL+D+ +K
Sbjct: 497 FRVPTKSALQEAYSTPILPLDVLSDKPSXEK 589
Score = 60.5 bits (145), Expect(2) = 3e-81
Identities = 31/44 (70%), Positives = 37/44 (83%), Gaps = 2/44 (4%)
Frame = +3
Query: 150 KKFEW--RLLAKYGSLISVISIIVMFVYLVATPSKSGAKGSKKK 191
KKFEW RLLAKYGSLISVISI+V+ VYLVA+PSK KG +++
Sbjct: 585 KKFEWAKRLLAKYGSLISVISIMVLLVYLVASPSKXQCKGKQEE 716
>AW705748 similar to PIR|T50823|T508 ribosomal protein S26 homolog [imported]
- alfalfa, partial (24%)
Length = 337
Score = 43.9 bits (102), Expect = 5e-05
Identities = 30/93 (32%), Positives = 45/93 (48%)
Frame = +2
Query: 35 KKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDA 94
K+ + + AERV V D++ Q +S AY V SW + + TS T E+
Sbjct: 59 KRPLVTNIVEQAERVYVHEDLFYQRSSLAYHVVKMHYSWPCAIHYDVVRVTSHTDERNHD 238
Query: 95 GGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSA 127
G+LS T E +A + G+ A +P + R P A
Sbjct: 239 PGLLSITCEDDAPTTGLSAQDPRAVGVRAPARA 337
>TC234680 similar to UP|Q9AT29 (Q9AT29) BZip transcription factor, partial
(49%)
Length = 571
Score = 27.7 bits (60), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKT 44
L+ FL + CS ASS+V ++ H+ LN+ T
Sbjct: 360 LLCFLSLMRLRFCSSASSEVELLLIHED*GLNKSGT 253
>CD410607
Length = 145
Score = 27.3 bits (59), Expect = 4.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 6 SKPLIAFLLIASFLLCSHASSDVPF 30
SKP I +L IA F LC H PF
Sbjct: 4 SKP*IVYLYIAIFNLCMHNQHSQPF 78
>BQ094412
Length = 422
Score = 27.3 bits (59), Expect = 4.5
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 61 STAYDVSLSDDSWTSDLFSVISGTTS--KTWEKL 92
S DVS+S S SD F+ +SGT+S K WE L
Sbjct: 111 SNGADVSISALSPGSDRFAAVSGTSSIKKHWEWL 10
>NP005445 cytochrome oxidase subunit I
Length = 1584
Score = 27.3 bits (59), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLVATPS 181
P+ W L+ +GS ISV+ I FV + T S
Sbjct: 1336 PDAYAGWNALSSFGSYISVVGIRRFFVVVTITSS 1437
>TC229883 similar to GB|BAC20813.1|23617133|AP005183 transcription
factor-like protein {Oryza sativa (japonica
cultivar-group);} , partial (15%)
Length = 1063
Score = 26.6 bits (57), Expect = 7.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 138 LPLDVLADRAPEKKFEWRLLAKYGSLISVI 167
LPL + PEK+FE RL + ++ S+I
Sbjct: 427 LPLQTMVQLFPEKRFEMRLWCLFRTINSLI 516
>TC219535
Length = 676
Score = 26.6 bits (57), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -2
Query: 88 TWEKLDAGGVLSHTFELEAKSKGV 111
TW LD V SHTF+ +KG+
Sbjct: 345 TWSNLDRPRVQSHTFDSFTTTKGI 274
>TC218635 similar to UP|Q9LHE6 (Q9LHE6) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MZE19, partial (20%)
Length = 742
Score = 26.2 bits (56), Expect = 9.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 89 WEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRV 123
WE + GG + LE+ K F GEP ++ +V
Sbjct: 220 WEAVCEGGSKAEELLLESIEKNPFVGEPYVVLSQV 324
>TC213605 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (6%)
Length = 704
Score = 26.2 bits (56), Expect = 9.9
Identities = 24/74 (32%), Positives = 32/74 (42%), Gaps = 2/74 (2%)
Frame = +2
Query: 4 PISKPL--IAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTS 61
P PL FLL AS S ASS P ++ +S T + +S I I+ +
Sbjct: 353 PFLPPLSCFRFLLPASSSSPSEASSTSPT*ISMSSSSGGEASTSSSSISEGISIFISASL 532
Query: 62 TAYDVSLSDDSWTS 75
T+ S S S TS
Sbjct: 533 TSPIKSSSSSSATS 574
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,458,597
Number of Sequences: 63676
Number of extensions: 84495
Number of successful extensions: 467
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of query: 192
length of database: 12,639,632
effective HSP length: 92
effective length of query: 100
effective length of database: 6,781,440
effective search space: 678144000
effective search space used: 678144000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC133780.7