TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC133571.7 + phase: 0 
         (79 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC206404 similar to UP|Q6Z1L1 (Q6Z1L1) Stromal cell-derived fact...   135  3e-33
TC206403 similar to UP|SDF2_ARATH (Q93ZE8) Stromal cell-derived ...   134  6e-33
AW570581                                                               95  6e-21
BE801819                                                               60  2e-10
TC208465 similar to GB|AAM16215.1|20334918|AY094059 At1g65700/F1...    26  4.2
TC213370                                                               25  5.5
TC212262 similar to UP|PODK_FLAPR (Q42736) Pyruvate, phosphate d...    25  7.1
TC225551 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)          25  9.3

>TC206404 similar to UP|Q6Z1L1 (Q6Z1L1) Stromal cell-derived factor 2-like
           protein, partial (65%)
          Length = 864

 Score =  135 bits (341), Expect = 3e-33
 Identities = 63/67 (94%), Positives = 64/67 (95%)
 Frame = +2

Query: 10  EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
           EGSGKTWKQDQR RLQHIDT GY +SHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY
Sbjct: 236 EGSGKTWKQDQRIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 415

Query: 70  LPVTESK 76
           LPVTESK
Sbjct: 416 LPVTESK 436


>TC206403 similar to UP|SDF2_ARATH (Q93ZE8) Stromal cell-derived factor
           2-like protein precursor (SDF2-like protein), partial
           (88%)
          Length = 1148

 Score =  134 bits (338), Expect = 6e-33
 Identities = 62/67 (92%), Positives = 64/67 (94%)
 Frame = +2

Query: 10  EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
           EGSGKTWKQDQ+ RLQHIDT GY +SHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY
Sbjct: 716 EGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 895

Query: 70  LPVTESK 76
           LPVTESK
Sbjct: 896 LPVTESK 916


>AW570581 
          Length = 232

 Score = 95.1 bits (235), Expect = 6e-21
 Identities = 46/64 (71%), Positives = 47/64 (72%)
 Frame = +2

Query: 12  SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLP 71
           SGKTW  D R RL H DT GY +SHD KYSR AGGQ E C VREKRADN W A E VYLP
Sbjct: 41  SGKTWNHDHRMRLHHKDTGGYLHSHD*KYSRNAGGQ*EACRVREKRADNAW*AYERVYLP 220

Query: 72  VTES 75
           VTES
Sbjct: 221 VTES 232


>BE801819 
          Length = 118

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +2

Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIA 44
          SGKTWKQDQ+ RL HIDT GY +SH+KKYSRI+
Sbjct: 20 SGKTWKQDQKIRLHHIDTGGYLHSHNKKYSRIS 118


>TC208465 similar to GB|AAM16215.1|20334918|AY094059 At1g65700/F1E22_3
           {Arabidopsis thaliana;} , complete
          Length = 684

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = +3

Query: 35  SHDKKYSRIAGGQQEVCGVREKRADNVWLAAE 66
           SH++ YS   G QQ V G+   R DN+ +  E
Sbjct: 246 SHERVYSTKEGVQQLVLGLYIIRGDNISVVGE 341


>TC213370 
          Length = 510

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 6   ETIGEGSGKTWKQDQRFRLQ 25
           E  GEG  K W +D R R+Q
Sbjct: 126 ERFGEGHAKKWWEDNRERIQ 185


>TC212262 similar to UP|PODK_FLAPR (Q42736) Pyruvate, phosphate dikinase,
           chloroplast precursor  (Pyruvate, orthophosphate
           dikinase) , partial (17%)
          Length = 983

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 15/52 (28%), Positives = 23/52 (43%)
 Frame = +1

Query: 10  EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNV 61
           E   +TW++ Q      +  S Y   H K  +R+    Q  CG R  +A N+
Sbjct: 391 EEKEQTWQKWQPLAYLFLLDSLYQQKHAKSINRMERSYQMACGRRYLKACNL 546


>TC225551 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)
          Length = 1482

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 12/45 (26%), Positives = 18/45 (39%)
 Frame = -3

Query: 23  RLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEG 67
           R QH+      +S  KK  +        C V E   +++WL   G
Sbjct: 967 REQHLRNCNRIFSLKKKQKKCGSSLSHCCLVSEASNNSMWLTGLG 833


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,722,944
Number of Sequences: 63676
Number of extensions: 39353
Number of successful extensions: 105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of query: 79
length of database: 12,639,632
effective HSP length: 55
effective length of query: 24
effective length of database: 9,137,452
effective search space: 219298848
effective search space used: 219298848
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)