
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133139.2 + phase: 0 /pseudo
(155 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC212986 50 6e-07
BM108247 weakly similar to PIR|H84710|H847 Mutator-like transpos... 37 0.003
BF425842 36 0.007
TC228067 32 0.12
TC228324 UP|LGUL_SOYBN (P46417) Lactoylglutathione lyase (Methy... 32 0.16
TC210267 similar to UP|Q8LGU6 (Q8LGU6) HOBBIT protein, partial (... 30 0.47
TC228281 similar to UP|BIOB_ARATH (P54967) Biotin synthase (Bio... 30 0.61
TC206861 28 1.4
TC205889 UP|Q9FQE9 (Q9FQE9) Glutathione S-transferase GST 9 , c... 28 1.8
BQ273732 similar to GP|8978266|dbj| anthocyanidin-3-glucoside rh... 27 3.0
TC228023 similar to UP|Q9FLH2 (Q9FLH2) 2-oxoglutarate dehydrogen... 27 5.2
TC207488 similar to UP|Q9SJE0 (Q9SJE0) T27G7.21, partial (58%) 27 5.2
BI785278 26 6.7
TC216101 similar to UP|Q9SCA1 (Q9SCA1) Calcium-binding protein, ... 26 8.8
BG509681 similar to EGAD|98465|10647 7 kDa photosystem ii core c... 26 8.8
TC215330 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragm... 26 8.8
TC221801 similar to UP|KHL1_MOUSE (Q9JI74) Kelch-like protein 1,... 26 8.8
>TC212986
Length = 404
Score = 49.7 bits (117), Expect = 6e-07
Identities = 22/53 (41%), Positives = 35/53 (65%), Gaps = 2/53 (3%)
Frame = +1
Query: 87 HYRN--QIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNVLK 137
H+R+ IR +W+D PK++W+Q D+G+RWG +TTN+SE N++ K
Sbjct: 1 HWRHLGDIRANKPSAAEWLDQLPKQKWVQCFDEGKRWG-LTTNLSESVNSMFK 156
>BM108247 weakly similar to PIR|H84710|H847 Mutator-like transposase
[imported] - Arabidopsis thaliana, partial (4%)
Length = 265
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 76 SGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISE 130
+ ++ T + +I + S + KW+ QW H +G R+GH+++NI E
Sbjct: 35 ASHATTTIAFKEKMGEIEEVSPEAAKWLQQFXPSQWALVHFKGTRFGHLSSNIEE 199
>BF425842
Length = 414
Score = 36.2 bits (82), Expect = 0.007
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 10 WVTPQPDLGLISDRHESIKSVVRRLDSNWH-----HVFCIRHITQLF 51
+VTPQP+L +ISDR + + ++ W+ V+CIRHI F
Sbjct: 246 YVTPQPNLCIISDRGTGLLATLQSKHVGWNGPDVSSVYCIRHIASNF 386
>TC228067
Length = 1716
Score = 32.0 bits (71), Expect = 0.12
Identities = 23/63 (36%), Positives = 29/63 (45%), Gaps = 9/63 (14%)
Frame = +1
Query: 100 VKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNV--LKG-----GPQSSNHTN--CPG 150
V+WV D + LQ HD R G ++ + KG GP S NHT+ CPG
Sbjct: 490 VEWVKDQIRANGLQMHDNVLRKGINPRTRAQQLEDFRRFKGISHYEGPDSDNHTSLPCPG 669
Query: 151 NLL 153
LL
Sbjct: 670 ELL 678
>TC228324 UP|LGUL_SOYBN (P46417) Lactoylglutathione lyase (Methylglyoxalase)
(Aldoketomutase) (Glyoxalase I) , complete
Length = 995
Score = 31.6 bits (70), Expect = 0.16
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 79 SMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWL---QAHDQGRR 120
S PS + R+Q R W D + K + D KK WL + H++G++
Sbjct: 313 SPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGKK 447
>TC210267 similar to UP|Q8LGU6 (Q8LGU6) HOBBIT protein, partial (39%)
Length = 1273
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (55%)
Frame = -3
Query: 71 INFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQW 111
I+F P +S P++ YR+ + W V+ + ++PKK W
Sbjct: 1199 ISFSPIQFSSFGPALGIYRSFLAPWLHHVLLLICESPKKLW 1077
>TC228281 similar to UP|BIOB_ARATH (P54967) Biotin synthase (Biotin
synthetase) , partial (39%)
Length = 677
Score = 29.6 bits (65), Expect = 0.61
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 94 DWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNVLKGGPQSSNHTNCP 149
DWS D VK + D+P L Q R H + +C +K G S + + CP
Sbjct: 299 DWSRDQVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCP 466
>TC206861
Length = 1326
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/52 (30%), Positives = 24/52 (45%)
Frame = -2
Query: 13 PQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSK 64
P P L + S + +V+ S WHH +++ E QE + EKSK
Sbjct: 1016 PFPCLTIKSGKSTKASVMVQWTSSVWHHEVNTKNLQIKIESLQESHNLEKSK 861
>TC205889 UP|Q9FQE9 (Q9FQE9) Glutathione S-transferase GST 9 , complete
Length = 1011
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 83 PSITHYRNQIRDWSDDVVKWVDDNPKKQWL---QAHDQGRR 120
PS + R Q R W D + K V D +K WL + H+ G++
Sbjct: 333 PSDPYERAQARFWVDYIDKKVYDTWRKMWLSKGEEHEAGKK 455
>BQ273732 similar to GP|8978266|dbj| anthocyanidin-3-glucoside
rhamnosyltransferase-like {Arabidopsis thaliana},
partial (3%)
Length = 419
Score = 27.3 bits (59), Expect = 3.0
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 RLWVTPQPDL-GLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEK 62
R +++PQP + GL + + S +R D+ W + RHI F EH + K
Sbjct: 80 RGFLSPQPFISGLTKSEEQQVLSKIRTQDA-WQILISERHIPAATCFFSEHAENSK 244
>TC228023 similar to UP|Q9FLH2 (Q9FLH2) 2-oxoglutarate dehydrogenase, E1
component, partial (36%)
Length = 1591
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Frame = -3
Query: 112 LQAHDQGRRWGHITTNISECFNNVL------KGGPQSSNHTNCP 149
L H G+ W +I TN CF+N G Q N T+ P
Sbjct: 1508 LPRHASGK-WNYIVTNYGRCFSNYTA*IKKKNGNSQGINSTSKP 1380
>TC207488 similar to UP|Q9SJE0 (Q9SJE0) T27G7.21, partial (58%)
Length = 955
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -3
Query: 95 WSDDVVKWVDD----NPKKQWLQAHDQGRRWGHITTNISECFNN 134
WSD + + ++ N L+ + R+WG ++ + EC+ N
Sbjct: 224 WSDSLGEGAEEQYATNGNADDLELEEMKRKWGCLSVKVEECWYN 93
>BI785278
Length = 422
Score = 26.2 bits (56), Expect = 6.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 118 GRRWGHITTNISECFNNVLKGGPQS 142
G+ WGH +C L+GGP S
Sbjct: 326 GQEWGHGLLPRIQCLTKQLQGGPNS 252
>TC216101 similar to UP|Q9SCA1 (Q9SCA1) Calcium-binding protein, partial
(65%)
Length = 796
Score = 25.8 bits (55), Expect = 8.8
Identities = 14/51 (27%), Positives = 23/51 (44%)
Frame = +1
Query: 19 LISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLN 69
LI D+ + ++ R+D N + L+E E RDEE+ + N
Sbjct: 325 LIPDK--DLAQMIERIDVNGDGCVDMDEFGDLYESIMEERDEEEDMREAFN 471
>BG509681 similar to EGAD|98465|10647 7 kDa photosystem ii core complex
protein {Spinacia oleracea}, partial (72%)
Length = 396
Score = 25.8 bits (55), Expect = 8.8
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +1
Query: 74 LPSGYSMTQPSITHYRNQ 91
LPS +S PS+TH R+Q
Sbjct: 10 LPSAFSTPPPSLTHQRHQ 63
>TC215330 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragment),
partial (94%)
Length = 1021
Score = 25.8 bits (55), Expect = 8.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 25 ESIKSVVRRLDSNWHHVFCI 44
ES+++ + +DSN HH+ C+
Sbjct: 66 ESVRAEITVVDSNHHHLLCL 7
>TC221801 similar to UP|KHL1_MOUSE (Q9JI74) Kelch-like protein 1, partial
(3%)
Length = 968
Score = 25.8 bits (55), Expect = 8.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 35 DSNWHHVFCIRHITQ 49
D+ WH FC RHI +
Sbjct: 331 DAGWHCSFCFRHINE 375
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,479,410
Number of Sequences: 63676
Number of extensions: 145447
Number of successful extensions: 674
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of query: 155
length of database: 12,639,632
effective HSP length: 89
effective length of query: 66
effective length of database: 6,972,468
effective search space: 460182888
effective search space used: 460182888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC133139.2