TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC131248.8 + phase: 0 
         (285 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211408 similar to UP|Q8L4J8 (Q8L4J8) CTP:phosphorylcholine cyt...   437  e-123
TC226454 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine cytid...   108  2e-24
BU543996 similar to GP|21668498|dbj CTP:phosphorylcholine cytidy...    96  2e-20
TC229484 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine cytid...    80  1e-15
TC226453 weakly similar to UP|Q84JV7 (Q84JV7) CTP:ethanolamine c...    49  3e-06
TC226455 homologue to UP|Q84JV7 (Q84JV7) CTP:ethanolamine cytidy...    39  0.002
TC208595 weakly similar to UP|Q9LIQ0 (Q9LIQ0) Arabidopsis thalia...    38  0.006
TC222141 homologue to UP|HMGI_HUMAN (P17096) High mobility group...    28  3.6
BF009812                                                               28  4.7
TC225380                                                               27  8.1

>TC211408 similar to UP|Q8L4J8 (Q8L4J8) CTP:phosphorylcholine
           cytidylyltransferase  , partial (83%)
          Length = 870

 Score =  437 bits (1125), Expect = e-123
 Identities = 205/245 (83%), Positives = 226/245 (91%)
 Frame = +2

Query: 13  DKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERY 72
           D+PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCC+D++THKYKGKTVM E ERY
Sbjct: 89  DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDQVTHKYKGKTVMTEAERY 268

Query: 73  ESLRHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGNDVYEFVKAIGKF 132
           ESLRHCKWVDEVIPD PWVINQEF+DKH IDYVAHD+LPYAD +GA NDVYEFVK++G+F
Sbjct: 269 ESLRHCKWVDEVIPDAPWVINQEFLDKHNIDYVAHDSLPYADANGAANDVYEFVKSVGRF 448

Query: 133 KETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQE 192
           KETKRTEGISTSD+IMRI+KDYNQYV+RNLDRGYSR ELGVSYVKEKRLR+N  LK LQE
Sbjct: 449 KETKRTEGISTSDVIMRIVKDYNQYVLRNLDRGYSRNELGVSYVKEKRLRVNRRLKTLQE 628

Query: 193 RVKKQQETVGKKIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQ 252
           +VK+ QE VG+KI  V + AGM+R EWVENADR VAGFLEMFEEGCHKMGTAIRDRIQE+
Sbjct: 629 KVKEHQEKVGEKIQIVAKTAGMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQER 808

Query: 253 LKAQQ 257
           L+ QQ
Sbjct: 809 LRGQQ 823


>TC226454 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine
           cytidylyltransferase, partial (71%)
          Length = 1889

 Score =  108 bits (271), Expect = 2e-24
 Identities = 60/140 (42%), Positives = 84/140 (59%), Gaps = 4/140 (2%)
 Frame = +1

Query: 16  VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERYESL 75
           +RVY DG +DL H+GHA +L QAK       L+VG  SDE     KG  V++ +ER   +
Sbjct: 421 IRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGLVSDEEIVANKGPPVLSMEERLALV 594

Query: 76  RHCKWVDEVIPDVPWVINQEFIDK----HKIDYVAHDALPYADTSGAGNDVYEFVKAIGK 131
              KWVDEVI D P+ I ++F+++    +KIDYV H   P       G D Y   K  G+
Sbjct: 595 SGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPD--GTDAYAAAKKAGR 768

Query: 132 FKETKRTEGISTSDIIMRII 151
           +K+ KRTEG+S++DI+ RI+
Sbjct: 769 YKQIKRTEGVSSTDIVGRIL 828



 Score = 88.2 bits (217), Expect = 4e-18
 Identities = 56/165 (33%), Positives = 86/165 (51%), Gaps = 2/165 (1%)
 Frame = +1

Query: 18   VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGK--TVMNEQERYESL 75
            VY DG +DLFH GH   L++A++     +LLVG  SDE   +++G    +M+  ER  S+
Sbjct: 994  VYIDGAFDLFHAGHVEILKRAREL--GDFLLVGIHSDETVSEHRGNHYPIMHLHERSLSV 1167

Query: 76   RHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGNDVYEFVKAIGKFKET 135
              C++VDEVI   PW I  + I    I  V H  +    T     D YE  K++G F   
Sbjct: 1168 LACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVA-EKTLNCELDPYEVPKSMGIFHLL 1344

Query: 136  KRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKR 180
            +  + I+T+ +  RI+ ++  YV RN  +  S +     Y +EK+
Sbjct: 1345 ESPKDITTATVAQRIMANHEAYVKRNAKKTRSEQR----YYEEKK 1467


>BU543996 similar to GP|21668498|dbj CTP:phosphorylcholine
           cytidylyltransferase {Arabidopsis thaliana}, partial
           (21%)
          Length = 613

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 51/96 (53%), Positives = 61/96 (63%), Gaps = 13/96 (13%)
 Frame = -1

Query: 203 KKIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLKSLL 262
           +KI  V +  GM R EWVENADR VAGFLEMFEEGCHKMG  IRDRIQE+L+ QQ +   
Sbjct: 613 EKIQIVAKTXGMXRNEWVENADRWVAGFLEMFEEGCHKMGXXIRDRIQERLRGQQSRDGT 434

Query: 263 Y------DEWDDDVDDEFYEDES-------VEYYSD 285
                  D+ DDD ++ +Y+DE         EYY D
Sbjct: 433 LRLQNGEDDKDDDDEEYYYDDEEDSDEEYFEEYYDD 326


>TC229484 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine
           cytidylyltransferase, partial (61%)
          Length = 947

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 55/167 (32%), Positives = 84/167 (49%), Gaps = 5/167 (2%)
 Frame = +2

Query: 18  VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKG--KTVMNEQERYESL 75
           VY DG +DLFH GH   L  A+      +LLVG  +D+     +G  + +MN  ER  S+
Sbjct: 374 VYIDGAFDLFHAGHVEILRLARDL--GDFLLVGIHTDQTVSATRGSHRPIMNLHERSLSV 547

Query: 76  RHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYA-DTSGAGNDVYEFVKAIGKFKE 134
             C++VDEVI   PW I+++ +    I  V H  +  + D      + Y    ++G FK 
Sbjct: 548 LACRYVDEVIIGAPWEISKDMLTTFNISLVVHGTIAESNDFKKEECNPYAVPISMGIFKV 727

Query: 135 TKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKEL--GVSYVKEK 179
            +    I+T+ II RI+ ++  Y  RN  +  S K    G S+V E+
Sbjct: 728 LESPLDITTTTIIRRIVCNHEAYQNRNKKKDESEKRYYEGKSHVSEE 868



 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 31/92 (33%), Positives = 49/92 (52%), Gaps = 12/92 (13%)
 Frame = +2

Query: 95  EFIDKHKIDYVAHDALPYADTSGAGNDVYEFVKAIGKFKETKRTEGISTSDIIMRII--- 151
           +  D++KID++ H   P     G   D Y   K  G++K+ KRTEG+S++DI+ R++   
Sbjct: 2   KLFDEYKIDFIIHGDDPCVLPDGT--DAYAHAKKAGRYKQIKRTEGVSSTDIVGRMLLCV 175

Query: 152 -------KDYN-QYVMRNLDRGYSRK-ELGVS 174
                  K++N   + R    G+S K E GVS
Sbjct: 176 RERSIAEKNHNHSSLQRQFSNGHSPKFEAGVS 271


>TC226453 weakly similar to UP|Q84JV7 (Q84JV7) CTP:ethanolamine
           cytidylyltransferase (CTP-phosphoethanolamine
           cytidylyltransferase), partial (11%)
          Length = 620

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 30/102 (29%), Positives = 50/102 (48%)
 Frame = +2

Query: 79  KWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGNDVYEFVKAIGKFKETKRT 138
           ++VDEVI   PW I  + I    I  V H  +    +     D YE  K++G F+  +  
Sbjct: 2   RYVDEVIIGSPWEITNDMITTFNISVVVHGTVS-EKSLNCELDPYEIPKSMGIFRLLESP 178

Query: 139 EGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKR 180
           + I+T+ +  RI+ ++  YV RN  +  S +     Y +EK+
Sbjct: 179 KDITTATVAQRIMANHEAYVKRNAKKTRSEQR----YYEEKK 292


>TC226455 homologue to UP|Q84JV7 (Q84JV7) CTP:ethanolamine
           cytidylyltransferase (CTP-phosphoethanolamine
           cytidylyltransferase), partial (7%)
          Length = 593

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 15/24 (62%), Positives = 19/24 (78%)
 Frame = +1

Query: 16  VRVYADGIYDLFHFGHARSLEQAK 39
           +RVY DG +DL H+GHA +L QAK
Sbjct: 496 IRVYMDGCFDLMHYGHANALRQAK 567


>TC208595 weakly similar to UP|Q9LIQ0 (Q9LIQ0) Arabidopsis thaliana genomic
           DNA, chromosome 3, BAC clone:F14O13, partial (20%)
          Length = 979

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
 Frame = +1

Query: 110 LPYADTSGAGNDVYEFVKAIGKFKETKRTE-GISTSDIIMRIIKDYNQYVMRNLDRGYSR 168
           L Y DT G        +K   K+ +TK +  G+S S+I++   KD+NQYV       Y  
Sbjct: 289 LDYEDTIGD-------LKTRFKYAKTKPSRFGLSASEILLMDDKDFNQYVSLKKLAPYWE 447

Query: 169 KELGVSYVKEKRLRMNMGLKK------LQERVKKQQETVGKKIGTVRRIAGMNRTE 218
           +E  +S  K+KR  + M  K+      L ++ KK +   GK   +   +   N+T+
Sbjct: 448 EEWKLS--KQKRYMLKMRAKELLCASSLDKKKKKSKVDSGKITSSKSVVENKNQTQ 609


>TC222141 homologue to UP|HMGI_HUMAN (P17096) High mobility group protein
           HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook 1),
           partial (11%)
          Length = 564

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 106 AHDALPYADTSGAGNDVYEFVKAIGKFKE 134
           AHDA P   ++G G D  + V A+G F +
Sbjct: 459 AHDANPSLSSAGEGGDAIDDVAAVGDFHD 373


>BF009812 
          Length = 247

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +2

Query: 131 KFKETKRTEGISTSDIIMRII 151
           ++K+ KRTEG+S++DI  RI+
Sbjct: 2   RYKQIKRTEGVSSTDIEGRIL 64


>TC225380 
          Length = 768

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
 Frame = +1

Query: 247 DRIQEQLKAQQLKSLL-YDEWDDDVDDEFYEDESVE 281
           D I  +  A+Q KS    D+ DDD DD+F +DE ++
Sbjct: 52  DTITLRKLAEQAKSFRPNDDDDDDSDDDFSDDEELQ 159


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,374,624
Number of Sequences: 63676
Number of extensions: 120792
Number of successful extensions: 693
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of query: 285
length of database: 12,639,632
effective HSP length: 96
effective length of query: 189
effective length of database: 6,526,736
effective search space: 1233553104
effective search space used: 1233553104
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)