TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130807.10 - phase: 0 /pseudo
         (530 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM086635                                                               31  1.6
TC220327 similar to UP|Q8RY07 (Q8RY07) Serine/threonine protein ...    31  1.6
BQ273711                                                               30  3.5
TC229961 similar to GB|AAP68250.1|31711788|BT008811 At3g23640 {A...    29  5.9
BG839047                                                               28  7.7
BU927201                                                               28  7.7
BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata},...    28  7.7

>BM086635 
          Length = 428

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +3

Query: 323 VSLIVLL*LLL*ILVLLIVSLLLNVHISW 351
           V+L++LL LLL +L+LL++ LLL VH  W
Sbjct: 156 VALLLLLLLLLLLLLLLLLLLLLLVHSVW 242


>TC220327 similar to UP|Q8RY07 (Q8RY07) Serine/threonine protein kinase pk23,
           partial (20%)
          Length = 780

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/43 (46%), Positives = 29/43 (66%)
 Frame = +2

Query: 320 EVLVSLIVLL*LLL*ILVLLIVSLLLNVHISWVWFYLI*KEKW 362
           E+ + L++LL LLL +L+LL   LL  V + + +F L *KEKW
Sbjct: 455 EIFLLLLLLLLLLLSLLLLL**YLLKLVCVFFSFFNLN*KEKW 583


>BQ273711 
          Length = 409

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = -1

Query: 23  ESSPNIQGKV*SRWCPEVA*GSGEDFQGHAVL*SAKGAVRDAYVG*GGR*LV---GKFCY 79
           E    +Q ++*S  C  V    G+DF+G  + * A G++ D Y   GG  LV     F  
Sbjct: 238 EPPAKVQWRL*SGRC*VVVS*DGKDFRGDGLP*GA*GSLCDIYAPRGG*KLVEVRETFVC 59

Query: 80  LCWKRMELQ*L-GRCSGE 96
             W+R  L+ L G+  GE
Sbjct: 58  CTWRRDSLECLQGQVLGE 5


>TC229961 similar to GB|AAP68250.1|31711788|BT008811 At3g23640 {Arabidopsis
           thaliana;} , partial (19%)
          Length = 717

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   FNSNRNWSW*WRSEDAGDLFEESSPNI 28
           +NS + WSW WR    G L  +SSPNI
Sbjct: 257 YNSTKCWSWFWRVLKVGLL--KSSPNI 331


>BG839047 
          Length = 610

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/35 (42%), Positives = 24/35 (67%)
 Frame = +2

Query: 322 LVSLIVLL*LLL*ILVLLIVSLLLNVHISWVWFYL 356
           L SL++LL LLL +L+LL++  LL   + + WF +
Sbjct: 467 LFSLLLLLLLLLLLLLLLLLCSLLYYMLCFKWFII 571


>BU927201 
          Length = 444

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -2

Query: 322 LVSLIVLL*LLL*ILVLLIVSLLLNVH 348
           LV  ++LL LLL +LVLL++ LL+ VH
Sbjct: 170 LVERLLLLLLLLLVLVLLVLMLLIIVH 90


>BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata}, partial
           (4%)
          Length = 414

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/57 (36%), Positives = 37/57 (64%)
 Frame = -2

Query: 322 LVSLIVLL*LLL*ILVLLIVSLLLNVHISWVWFYLI*KEKWLLKLQLRV**LLLLFV 378
           ++ L++LL LLL +L+LL++ LLL +    +  +L+     L+ + LR+ *LLLL +
Sbjct: 407 ILLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHLL-----LVDILLRIL*LLLLLL 252


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.370    0.167    0.608 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,692,214
Number of Sequences: 63676
Number of extensions: 283733
Number of successful extensions: 4018
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 2246
Number of HSP's gapped (non-prelim): 1805
length of query: 530
length of database: 12,639,632
effective HSP length: 102
effective length of query: 428
effective length of database: 6,144,680
effective search space: 2629923040
effective search space used: 2629923040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 61 (28.1 bits)