BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130806.6 + phase: 0 /pseudo
(2359 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 143 8e-34
CF922341 126 1e-28
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 76 2e-13
CF922488 72 4e-12
BU084093 70 8e-12
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 67 7e-11
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 64 8e-10
AW706233 62 2e-09
TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 56 2e-07
BI674393 53 1e-06
NP334778 reverse transcriptase [Glycine max] 53 2e-06
TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partia... 53 2e-06
BQ628592 38 4e-05
TC226371 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 47 1e-04
CO985160 47 1e-04
BI786384 47 1e-04
AW184779 45 3e-04
TC228588 similar to UP|Q6NLV4 (Q6NLV4) At5g13480, partial (29%) 45 3e-04
CF921210 42 3e-04
TC217698 similar to UP|Q89GY6 (Q89GY6) Blr6209 protein, partial ... 42 0.003
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 143 bits (361), Expect = 8e-34
Identities = 66/137 (48%), Positives = 102/137 (74%)
Frame = +1
Query: 798 SKISIMSLLLNSEAHKDALMKVLEQAFVDYDVMVGQFGGIVGNITACNNLSFSDEELPAE 857
+++S++ LL++SE H+ L+KVL +A V D+ V FGG+V NITA N L+F++EE+PAE
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 858 GRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYAQLAYQDAPLRRSGVMVKAFDG 917
GR HN+ALH+SV C ++ VL+D G SLNV+ K+T +L + + L+ S ++V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 918 SRKDVLGEVVLPITVGP 934
+R++V GE+ LP+ +GP
Sbjct: 391 TRREVRGEIDLPVQIGP 441
>CF922341
Length = 675
Score = 126 bits (316), Expect = 1e-28
Identities = 68/162 (41%), Positives = 99/162 (60%), Gaps = 1/162 (0%)
Frame = +1
Query: 114 PATMTYSAPVIHTIPQTEEPIFHSGNAEAYEEVSDLREKYDELRRDMKALHEKGKFG-KT 172
P T P H PQ + HS ++ ++++ K D L ++A+ +
Sbjct: 205 PLRNTLEGPQYH--PQLH--LLHSTTSKNPHVMAEMG-KLDHLEEGLRAIEGGEDYAFAN 369
Query: 173 AYDLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLT 232
+L LVP++ P KFK+ DF+KYKG++CP+ HLKMY ++M AYA+D+++LI+ FQESLT
Sbjct: 370 LEELFLVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLT 549
Query: 233 GPASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDL 274
G A WYTNL+ +RV +++DL AFV QY YN DM R L
Sbjct: 550 GVAVTWYTNLEPSRVHSWKDLMVAFVRQYQYNFDMVLSRMQL 675
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 76.3 bits (186), Expect = 2e-13
Identities = 64/210 (30%), Positives = 106/210 (50%)
Frame = +3
Query: 1943 R*TVVS*Y*SVSPNSRVSSWGIQQR*EDSQKII**FLPEWGYLVQKKL*HGLAQMCRQV* 2002
R* +V + ++ R+ + +Q *ED +K+ FL E + V +K H + +C
Sbjct: 129 R*ALVFRHQAICHKQRIPARDCRQ**EDIEKVGGRFLHERKHTV*EKPRHETSAVCGCQG 308
Query: 2003 S*FIDT*NTRRILRNSS*WAHNG*KDIASRLLLDDNGIRLLQAYQKVSQVSDIRRQDSYA 2062
D + ++ N+ A G +D SRLLL +G LL +++ Q+S +RR
Sbjct: 309 GKSHDRGSP*GLVWNARQRACYGQEDPKSRLLLAYHGK*LLCPCEEMPQMSSVRR*CQCP 488
Query: 2063 ANYTQFTFLSVAFLYVGH*HDRKD*AQSFKWTPFYPSGY*LLH*VG*GRIVCQCDQTSSG 2122
++ L +AFL+VG+ R *AQ +W+ +P L H VG G + + + G
Sbjct: 489 TASSECHVLPLAFLHVGNRCHRGH*AQGLEWSSLHPRSDRLFHQVGRGSFLYRRHEGCGG 668
Query: 2123 QIYQESYHLSLWHPQPDHHRQRNKSKQQDD 2152
Q++ E HL +W + D+H QR++ K QDD
Sbjct: 669 QVH*ERDHLPIWFAKEDYHGQRHQPK*QDD 758
>CF922488
Length = 741
Score = 71.6 bits (174), Expect = 4e-12
Identities = 64/221 (28%), Positives = 110/221 (48%), Gaps = 2/221 (0%)
Frame = +2
Query: 1372 SKER-W*GQNVC*LP*FKQS*PERRLSFTSY*RVG*QYCKV*SLLIHGWILRI*SNQDGT 1430
S ER W G NV L K S + +SFT+Y R + + +L+HGWI R+* ++D T
Sbjct: 2 SPERGWEGVNVRGLSRSKLSQSKG*VSFTAYQRSRG*HDQFFPILLHGWIFRL*PDKDST 181
Query: 1431 RR*RENIIYYTLGHFLLQSNAVRFNQCRSYLSEGYDYSFPRYDT*RD*GLCG*YDSQV-D 1489
R ++ +Y++G+ LL V +C + G+ +D D GL G*+D ++ +
Sbjct: 182 RGYGKDNFHYSMGNLLL*GYVVWAEECWGNIPAGHGGIILGHDAQGDRGLHG*HDREIKN 361
Query: 1490 Y*RRPCQVSTEDVPAPEEVQTSFKSQQMHFWCQNRKASRFHCQPERHRSRS*QSQSHQRD 1549
PCQ + + V A +Q +S++++ + +K +R + ER+R Q +S D
Sbjct: 362 GGGTPCQFA-KVV*ATT*IQVETESRKVYV*GKIQKVARLY**LERNRGGFEQGESDP*D 538
Query: 1550 ACSENRKRSKGFSWTTKLHLPVHFSYDCNLWADIQTTPQKT 1590
+ R+ S F +LH +H +C+L A Q++
Sbjct: 539 GQATYREASPRFLGEVELHRKIHIIVNCHLRASFHIVVQES 661
>BU084093
Length = 421
Score = 70.5 bits (171), Expect = 8e-12
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Frame = -1
Query: 405 QQTNNHPQIPQYP-----QIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFP 459
Q +HP + P P+ P + PQ P+P T+
Sbjct: 406 QYAQHHPSFSAHTGNASSSTPVQPKAPAQREAPQVPTPNTTRPVG--------------- 272
Query: 460 YQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKL 519
+NF +P+Q+ P+P+TY +LLP L+ +L +
Sbjct: 271 -NSNTTRNFPPRPFQE-----------FTPLPMTYEDLLPSLIANHLAVVTPGRVLQPPF 128
Query: 520 PSWYRLDQTCDFHEGGRGHNIETCYAFKSIVQRLINDGKITF 561
P WY + TC +H G GH++E C A K VQ L++ G +TF
Sbjct: 127 PKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTF 2
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 67.4 bits (163), Expect = 7e-11
Identities = 51/131 (38%), Positives = 70/131 (52%), Gaps = 1/131 (0%)
Frame = +1
Query: 1415 LIHGWILRI*SNQDGTRR*RENIIYYTLGHFLLQSNAVRFNQCRSYLSEGYDYSFPRYDT 1474
LI+GW L +*SN DGT R RE+ + +G L S+ +R + LS + P YD
Sbjct: 4 LIYGWFLGV*SNIDGT*RCREDHFRHPMGDIQL*SDGLRAEKYWGNLSACHGGVVP*YDA 183
Query: 1475 *RD*GLCG*YDSQV-DY*RRPCQVSTEDVPAPEEVQTSFKSQQMHFWCQNRKASRFHCQP 1533
* + GL *+D QV D R PCQ S V E+ K QMH W + +A+R + +
Sbjct: 184 *GNRGLRR*HDCQVSD*DRTPCQ-SV*AVWKVAEIPIKTKPNQMHIWGEVGEAARIYRKS 360
Query: 1534 ERHRSRS*QSQ 1544
ER R RS +S+
Sbjct: 361 ERDRDRSRESE 393
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 63.9 bits (154), Expect = 8e-10
Identities = 47/125 (37%), Positives = 63/125 (49%), Gaps = 15/125 (12%)
Frame = +1
Query: 957 PWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSFSFI-GADDVEGTPFQGFT 1015
PWIH G V STLHQKLKFV G LV V+GEE +LVS SS ++ A++ T FQ F
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 1016 IEDKNAKRNEASISSLKDA----QKVIQAGG---SASWGK-------LIELPENKHREGL 1061
+ ++ + L DA +V+ G GK LI N+ + GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 1062 GFFPS 1066
G+ P+
Sbjct: 361 GYKPT 375
Score = 36.6 bits (83), Expect = 0.13
Identities = 19/56 (33%), Positives = 32/56 (56%)
Frame = +2
Query: 1300 VCLVLPRYAGSRH*YCGTSPTFKT*VSASQTKVEKNTS*HGSQNQRRGTETDRRWF 1355
+CLV+PRYA *+C T K+ V + + EK+ + + +++RR + RWF
Sbjct: 1100 LCLVIPRYARFEF*HCTAPITSKSRVFPGKAETEKDEARNILEDKRRSEKVI*RWF 1267
>AW706233
Length = 376
Score = 62.4 bits (150), Expect = 2e-09
Identities = 30/72 (41%), Positives = 47/72 (64%), Gaps = 1/72 (1%)
Frame = -3
Query: 151 EKYDELRRDMKALHEKGKFG-KTAYDLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMY 209
EK D L+ KA+ + +L LV ++ P KFK+ +F+KYKG++CP+ HLKMY
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168
Query: 210 VRRMPAYAQDDQ 221
++M AYA+D++
Sbjct: 167 CQKMGAYAKDEK 132
>TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (43%)
Length = 1810
Score = 55.8 bits (133), Expect = 2e-07
Identities = 59/198 (29%), Positives = 74/198 (36%), Gaps = 38/198 (19%)
Frame = +2
Query: 355 ATPASGTKKTGNHFPRKKEQEVGMVTHGRPQQTYPAYQHIAAITPTSHPFQQTNNHPQIP 414
++P + KKT N +Q + H Q P + A P N Q+P
Sbjct: 536 SSPTTDPKKTDNASDANNQQLALALPHQIAPQPQPPAPQVQAQAQAPAP-----NVTQVP 700
Query: 415 QYPQIPQY--------PQIPQYPQFPQNPSPQNTQQ-QNFQQQPYQQQ----PYQQFP-Y 460
Q P P Y P +PQ+PQ PS Q + Q+ QP Q P QQF Y
Sbjct: 701 QQP--PYYMPPTPLPNPAVPQHPQNQYLPSDQQYRTPQHVAPQPTPSQVTPSPVQQFSHY 874
Query: 461 QQYPQQNFQQQPYQQR-------PQQPRP-----------------PRMPINPIPVTYAE 496
QQ QQ QQQP QQ+ P QP P P NP P AE
Sbjct: 875 QQQQQQPQQQQPQQQQQWSQQVLPSQPPPMQSQVRPPSPNVYPPYQPNQATNPSP---AE 1045
Query: 497 LLPGLLKKNLVQTRTAPP 514
LP + + + PP
Sbjct: 1046TLPNSMAMQMPYSGVPPP 1099
>BI674393
Length = 152
Score = 53.1 bits (126), Expect = 1e-06
Identities = 22/47 (46%), Positives = 39/47 (82%)
Frame = +1
Query: 774 EFDEILKLIKKSEYKVVDQLMQTPSKISIMSLLLNSEAHKDALMKVL 820
E E L++I++SE+KV++QL +TP+++S++ LL++SE H+ L+KVL
Sbjct: 7 EASEFLRIIQQSEFKVIEQLNKTPARVSLLELLMSSEPHRALLVKVL 147
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 52.8 bits (125), Expect = 2e-06
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +2
Query: 1379 QNVC*LP*FKQS*PERRLSFTSY*RV-G*--QYCKV*SLLIHGWILRI*SNQDGTRR*RE 1435
++VC L K S + SFT++ G* Q+C + L HGWI +*S++DGTR +
Sbjct: 2 EDVCGLSRSKPSQSKG*FSFTAHRHSHG*HGQFCPI---LFHGWIFGL*SDKDGTRGYGK 172
Query: 1436 NIIYYTLGHFLLQSNAVRFNQCRSYLSEGYDYSFPRYDT*RD*GLCG*YDSQV 1488
+ +Y++G+ LL + V + L G+ P +D D GLCG* D ++
Sbjct: 173 DNFHYSMGNLLL*GDVVWAEEFWGNLPSGHGGIIPGHDAQGDRGLCG*NDREI 331
>TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partial (4%)
Length = 540
Score = 52.8 bits (125), Expect = 2e-06
Identities = 38/101 (37%), Positives = 45/101 (43%)
Frame = +2
Query: 385 QQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQN 444
QQ QH+ + QQ H Q Q PQ+ Q Q+PQ Q Q P Q QQ
Sbjct: 26 QQMQNQQQHLPQLQQ-----QQQLPHMQQQQLPQLQQQQQLPQLQQQQQLPQLQQQQQLQ 190
Query: 445 FQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRM 485
QQ P QQ Q QQ PQ QQQ Q + QP+ +M
Sbjct: 191 QQQLPQLQQQQQLPQLQQLPQLQQQQQLPQLQQLQPQQQQM 313
Score = 46.6 bits (109), Expect = 1e-04
Identities = 35/90 (38%), Positives = 40/90 (43%), Gaps = 8/90 (8%)
Frame = +2
Query: 405 QQTNNHPQIPQYPQ-IPQYPQIPQYPQFPQNPSPQNTQQQNF-----QQQPYQQQPYQQF 458
QQ H Q+ Q +PQ Q Q P Q PQ QQQ QQQ Q Q QQ
Sbjct: 8 QQQQQHQQMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQQLPQLQQQQQLPQLQQQQQL 187
Query: 459 PYQQYPQQNFQQQ--PYQQRPQQPRPPRMP 486
QQ PQ QQQ QQ PQ + ++P
Sbjct: 188 QQQQLPQLQQQQQLPQLQQLPQLQQQQQLP 277
Score = 31.2 bits (69), Expect = 5.6
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 441 QQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPG 500
QQQ QQ QQQ Q QQ + QQQ Q QQ + P++ + LP
Sbjct: 11 QQQQHQQMQNQQQHLPQLQQQQQ-LPHMQQQQLPQLQQQQQLPQL-------QQQQQLPQ 166
Query: 501 LLKKNLVQTRTAPPI--PEKLPSWYRLDQ 527
L ++ +Q + P + ++LP +L Q
Sbjct: 167 LQQQQQLQQQQLPQLQQQQQLPQLQQLPQ 253
Score = 30.4 bits (67), Expect = 9.5
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Frame = +2
Query: 385 QQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQ-- 442
QQ P Q + P Q Q+PQ Q+PQ Q Q PQ Q PQ Q
Sbjct: 149 QQQLPQLQQQQQLQQQQLP--QLQQQQQLPQLQQLPQLQQQQQLPQL-QQLQPQQQQMVG 319
Query: 443 ----QNFQQQPYQQQPYQQ 457
Q F Q P + Q Q
Sbjct: 320 AGMGQAFGQGPGRSQLVSQ 376
>BQ628592
Length = 423
Score = 38.1 bits (87), Expect(2) = 4e-05
Identities = 22/63 (34%), Positives = 35/63 (54%)
Frame = -3
Query: 1598 LPEGF*QHKEVLARTTDSYPSS*RKTFDHVPNGVRKFHGLCARTTR*NRKKRARHLLFKQ 1657
LP G +++ + ++ + RKTF V + VR+ +G+ + R +K HLLFKQ
Sbjct: 388 LPRGLRKNQTEPRESLGAHATCNRKTFSPVHDYVRRVYGMRVGSARRLWEKGTSHLLFKQ 209
Query: 1658 EVY 1660
EVY
Sbjct: 208 EVY 200
Score = 29.6 bits (65), Expect(2) = 4e-05
Identities = 20/61 (32%), Positives = 36/61 (58%)
Frame = -2
Query: 1666 ILHAREDMLCSSLGCQTPPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATI*I* 1725
+L+ +D+L +G + +++ S+++A NGS ++H+*EA + VA TI*I
Sbjct: 185 LLNVGKDVLYLGMGVTSS*AVHAQSYHVAYFQNGSCEIHL*EAGPHGTNR*VAGTTI*IQ 6
Query: 1726 Y 1726
Y
Sbjct: 5 Y 3
>TC226371 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (10%)
Length = 1099
Score = 47.0 bits (110), Expect = 1e-04
Identities = 32/89 (35%), Positives = 41/89 (45%)
Frame = +1
Query: 397 ITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQ 456
I PT P + +PQ+PQ P QY + PQ +PQ T Q P QQ +
Sbjct: 19 IPPTPMP------NSALPQHPQNQYLPSDQQY-RTPQLVAPQPTPSQVTPSPPVQQFSHY 177
Query: 457 QFPYQQYPQQNFQQQPYQQRPQQPRPPRM 485
Q P QQ QQQ + Q+ Q +PP M
Sbjct: 178 QQPQQQQQPPQQQQQQWSQQVQPSQPPPM 264
Score = 31.2 bits (69), Expect = 5.6
Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 4/160 (2%)
Frame = +1
Query: 384 PQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQ 443
PQQ + + P+ P Q+ P P YP P P NPSP T
Sbjct: 205 PQQQQQQWSQ--QVQPSQPPPMQSQVRPSSPNV-----YP--PYQPNQATNPSPAETLPN 357
Query: 444 NFQQQPYQQQPYQQFPYQQYPQQNFQQQPY----QQRPQQPRPPRMPINPIPVTYAELLP 499
+ Q PY P Q + + Y + PQQP PP+ + P E+
Sbjct: 358 SMAMQ----MPYSGVPPQGSNRADAIPYGYGGAGRTVPQQP-PPQQMKSSFPAPPGEMYG 522
Query: 500 GLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHEGGRGHN 539
T + P +P ++ D EGGR H+
Sbjct: 523 --------PTGSLPALPPPSSAYMMYD-----GEGGRSHH 603
>CO985160
Length = 777
Score = 47.0 bits (110), Expect = 1e-04
Identities = 44/139 (31%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = -2
Query: 385 QQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQN 444
QQ QH+ + QQ H Q Q PQ+ Q Q Q PQ Q QQ
Sbjct: 731 QQMQNQQQHLPQLQQ-----QQQLPHMQQQQLPQLQQQQQ--QLPQLQQQQQQLPQLQQQ 573
Query: 445 FQQQPYQQQPYQQFPYQQYPQQNFQQ-QPYQQRPQQPRPPRMPINPIP-VTYAELLPGLL 502
QQ P QQ QQ P Q QQ Q Q QQ+ QQ + ++ +P + + LP L
Sbjct: 572 QQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQQVQQQQLAQLQQQQLPQIQQQQQLPQLQ 393
Query: 503 K-KNLVQTRTAPPIPEKLP 520
+ L Q + P + + P
Sbjct: 392 QLPQLQQQQQLPQLQQLQP 336
Score = 44.7 bits (104), Expect = 5e-04
Identities = 38/123 (30%), Positives = 50/123 (39%), Gaps = 4/123 (3%)
Frame = -2
Query: 367 HFPRKKEQEVGMVTHGRPQQTYPAYQHIAAITPTSHPFQQT----NNHPQIPQYPQIPQY 422
H P+ ++Q+ + H + QQ Q + QQ Q+PQ Q Q
Sbjct: 707 HLPQLQQQQ--QLPHMQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQ--QQ 540
Query: 423 PQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRP 482
Q+PQ Q Q QQQ QQQ Q QQ P Q QQ Q Q Q QQ +
Sbjct: 539 QQLPQLQQQQQQLPQLQQQQQQVQQQQLAQLQQQQLPQIQQQQQLPQLQQLPQLQQQQQL 360
Query: 483 PRM 485
P++
Sbjct: 359 PQL 351
Score = 44.7 bits (104), Expect = 5e-04
Identities = 34/86 (39%), Positives = 39/86 (44%), Gaps = 4/86 (4%)
Frame = -2
Query: 405 QQTNNHPQIPQYPQ-IPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQY 463
Q H Q+ Q +PQ Q Q P Q PQ QQQ QQ P QQ QQ P Q
Sbjct: 749 QMQQQHQQMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQ--QQLPQLQQQQQQLPQLQQ 576
Query: 464 PQQNFQ--QQPYQQRPQ-QPRPPRMP 486
QQ QQ QQ PQ Q + ++P
Sbjct: 575 QQQQLPQLQQQQQQLPQLQQQQQQLP 498
Score = 44.3 bits (103), Expect = 6e-04
Identities = 38/117 (32%), Positives = 49/117 (41%)
Frame = -2
Query: 369 PRKKEQEVGMVTHGRPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQY 428
P+ ++Q+ + + QQ P Q P QQ Q+PQ Q Q Q+PQ
Sbjct: 650 PQLQQQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQ-----QLPQLQQ--QQQQLPQL 492
Query: 429 PQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRM 485
Q Q Q Q QQ P QQ Q QQ PQ QQQ Q + QP+ +M
Sbjct: 491 QQQQQQVQQQQLAQLQQQQLPQIQQQQQLPQLQQLPQLQQQQQLPQLQQLQPQQQQM 321
Score = 36.6 bits (83), Expect = 0.13
Identities = 29/74 (39%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 411 PQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQ 470
PQ+ Q Q Q Q Q Q PQ QQQ QQ P Q QQ PQ QQ
Sbjct: 776 PQLSSQQQ-QQMQQQHQQMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQQQLPQLQQQQ 600
Query: 471 Q--PYQQRPQQPRP 482
Q P Q+ QQ P
Sbjct: 599 QQLPQLQQQQQQLP 558
Score = 34.7 bits (78), Expect = 0.50
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -2
Query: 423 PQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPY---QQYPQ-QNFQQQPYQQRPQ 478
PQ+ Q Q Q+ Q QN QQ Q Q QQ P+ QQ PQ Q QQQ Q + Q
Sbjct: 776 PQLSSQQQ--QQMQQQHQQMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQQQLPQLQQQ 603
Query: 479 QPRPPRM 485
Q + P++
Sbjct: 602 QQQLPQL 582
Score = 32.3 bits (72), Expect = 2.5
Identities = 23/82 (28%), Positives = 32/82 (38%)
Frame = -2
Query: 373 EQEVGMVTHGRPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFP 432
+Q+ + + QQ Q +A + P Q Q+PQ Q+PQ Q Q PQ
Sbjct: 521 QQQQQQLPQLQQQQQQVQQQQLAQLQQQQLP--QIQQQQQLPQLQQLPQLQQQQQLPQLQ 348
Query: 433 QNPSPQNTQQQNFQQQPYQQQP 454
Q Q + Q Y Q P
Sbjct: 347 QLQPQQQQMVGSGMGQAYVQGP 282
>BI786384
Length = 421
Score = 46.6 bits (109), Expect = 1e-04
Identities = 37/143 (25%), Positives = 68/143 (46%), Gaps = 18/143 (12%)
Frame = +2
Query: 566 PNVQTNPLPNHGAATVNMIEDCQ--KTRPILNVQHIRTPLVPLHAKLCKVDLFEHDHDLC 623
PNV+TNPL NHG VN +E + +++P+ + + TP + L K + H
Sbjct: 2 PNVRTNPLANHGGGAVNAVESDRPHRSKPL---RDVATPRRFIFEALQKGGVIPHSGCKE 172
Query: 624 EICLMNSG------GCQKVRNDIQGLLNRGELVV---ERRCDDVCVITPEG-------PL 667
+ CL++SG C +V +Q ++++G L V + +C+ + EG PL
Sbjct: 173 DSCLLHSGEMHDMETCLEVEELLQRMIDQGRLEVGIEGKEEQHICMQSTEGSGVAKPKPL 352
Query: 668 EVFYDSRKSTITPLVICLPGPLP 690
+++ ++ P + P+P
Sbjct: 353 VIYFTKSAASQKPGHPLMAKPVP 421
>AW184779
Length = 432
Score = 45.4 bits (106), Expect = 3e-04
Identities = 24/47 (51%), Positives = 28/47 (59%)
Frame = +2
Query: 2071 LSVAFLYVGH*HDRKD*AQSFKWTPFYPSGY*LLH*VG*GRIVCQCD 2117
L+ + YVGH DR *AQ FKWT + S *LLH +G VC CD
Sbjct: 272 LAAPWPYVGHRRDRSH*AQGFKWTSLHFSRN*LLHQMGRSSFVC*CD 412
>TC228588 similar to UP|Q6NLV4 (Q6NLV4) At5g13480, partial (29%)
Length = 1178
Score = 45.4 bits (106), Expect = 3e-04
Identities = 38/128 (29%), Positives = 52/128 (39%), Gaps = 23/128 (17%)
Frame = +1
Query: 413 IPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQ--QFPYQQYPQQ---- 466
+PQ Q +P P P P P QQQPYQQ P Q Q +Q PQQ
Sbjct: 571 MPQGEQKQPHPVSMGAPPLPPGPHPSLINAN--QQQPYQQNPQQMPQHQHQALPQQMGSL 744
Query: 467 ----NFQQQPYQQR---PQQPR-PPRMP---------INPIPVTYAELLPGLLKKNLVQT 509
N QQ + P PR PP+MP I+ +P ++ +PG +
Sbjct: 745 PMPPNMQQLQHPSHSPFPNMPRPPPQMPIGMPGSIPGISSVPTSHPMPMPGPMGMQGAMN 924
Query: 510 RTAPPIPE 517
+ P+P+
Sbjct: 925 QMGTPMPQ 948
>CF921210
Length = 790
Score = 42.4 bits (98), Expect(2) = 3e-04
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 484 RMPIN--PIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHEGGRGHNIE 541
R P+ PIPV+YA+LL LL ++V A L Y + TC G H+IE
Sbjct: 326 RKPVEFTPIPVSYADLLSYLLDNSMVAITLAKVHQPPLF*GYDSNATCG---GALRHSIE 496
Query: 542 TCYAFKSIVQRLINDGKITFTDS 564
C A K VQ LI+ G + F ++
Sbjct: 497 HCRALKRKVQGLIDAGWLKFEEN 565
Score = 21.9 bits (45), Expect(2) = 3e-04
Identities = 15/54 (27%), Positives = 20/54 (36%)
Frame = +1
Query: 425 IPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQ 478
IP P FP P+ Q N + PY P + Q+P+ PQ
Sbjct: 127 IPVRPSFP--PTQQYLYSANNKPSPY-------------PPPRYPQRPFLNLPQ 243
>TC217698 similar to UP|Q89GY6 (Q89GY6) Blr6209 protein, partial (5%)
Length = 865
Score = 42.0 bits (97), Expect = 0.003
Identities = 37/106 (34%), Positives = 44/106 (40%)
Frame = +2
Query: 381 HGRPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQIPQYPQFPQNPSPQNT 440
+G+ Q YP Q+ TS + N+ Q P YP +Y Q PQN P
Sbjct: 53 YGQASQNYPPQQNYGM---TSQNYTPQQNYGQAS-----PNYPPQQKYGQAPQNYPP--- 199
Query: 441 QQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQQRPQQPRPPRMP 486
QQNF Q P Q P QQ Y Q QQQ + Q R MP
Sbjct: 200 -QQNFDQAP-QNYPQQQ-RYGPSSPQYAQQQSFGPPGQGERRNYMP 328
Score = 40.8 bits (94), Expect = 0.007
Identities = 29/67 (43%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 416 YPQIPQ-YPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQQPYQQFPYQQYPQQNFQQQPYQ 474
Y Q Q YP Y QN +PQ Q P QQ Y Q P PQQNF Q P Q
Sbjct: 53 YGQASQNYPPQQNYGMTSQNYTPQQNYGQASPNYP-PQQKYGQAPQNYPPQQNFDQAP-Q 226
Query: 475 QRPQQPR 481
PQQ R
Sbjct: 227 NYPQQQR 247
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.343 0.149 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,073,697
Number of Sequences: 63676
Number of extensions: 1668745
Number of successful extensions: 25825
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 15572
Number of HSP's successfully gapped in prelim test: 646
Number of HSP's that attempted gapping in prelim test: 4247
Number of HSP's gapped (non-prelim): 20497
length of query: 2359
length of database: 12,639,632
effective HSP length: 113
effective length of query: 2246
effective length of database: 5,444,244
effective search space: 12227772024
effective search space used: 12227772024
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 67 (30.4 bits)
Medicago: description of AC130806.6