BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130802.9 + phase: 0 /pseudo
(937 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 162 5e-41
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 161 9e-41
BE802806 140 3e-33
CO981347 92 1e-21
TC232995 94 4e-19
CO982036 89 9e-18
BI321712 88 2e-17
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 84 4e-16
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 80 4e-15
BM143109 75 2e-13
NP005470 reverse transcriptase 74 2e-13
BE211208 69 1e-11
TC234745 weakly similar to UP|Q9FFM0 (Q9FFM0) Copia-like retrotr... 68 2e-11
AW185460 68 2e-11
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 65 1e-10
AW759031 weakly similar to GP|22093573|db polyprotein {Oryza sat... 65 1e-10
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 63 5e-10
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 61 3e-09
BU550037 60 3e-09
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 55 2e-07
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 162 bits (411), Expect(2) = 5e-41
Identities = 90/246 (36%), Positives = 140/246 (56%)
Frame = +1
Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
+++LYGLKQ+PR WY R EFL + G+ + G D +++ K++ + ++ +YVDDI+
Sbjct: 3634 KKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFV-KQDAENLMIAQIYVDDIVFGG 3810
Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
S + + +++ EFEM +G LG+ +K+ D +FLSQ Y K ++F M
Sbjct: 3811 MSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDS--IFLSQSKYAKNIVKKFGME 3984
Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
N+ TP H KLS + S D+ Y S +GS++Y + SRPD+ YAV +
Sbjct: 3985 NASHKRTPAPTHLKLSKDEAGTSVDQSL------YRSMIGSLLY-LTASRPDITYAVGVC 4143
Query: 745 SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
+R+ ANP I H +K +L+Y+NG+ G+ Y + + L GY DAD+AG+ D RKS
Sbjct: 4144 ARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS--DSMLVGYCDADWAGSADDRKST 4317
Query: 805 VGFCVY 810
G C Y
Sbjct: 4318 SGGCFY 4335
Score = 24.6 bits (52), Expect(2) = 5e-41
Identities = 33/114 (28%), Positives = 41/114 (35%)
Frame = +3
Query: 442 RNGFIGKEPNLETCEAT*SPKGSWMQVDLQEKGWHSGC*RSKV*SKTCGKGFHSSGGGRL 501
R G I KE +L T W QVDLQE+ C K +TC HS RL
Sbjct: 3261 RIGAIQKE*SLGASS*TRGN*CDWHQVDLQEQNQ*RRCYNQKQ-GQTCCSRLHSD*RCRL 3437
Query: 502 QRDLFTGGEALFHKDTYGYCESIQS*VGTNGCEDRFLIW*P*RDNLHGTTGRFC 555
+ H+ Q +GCE+R W P +L G C
Sbjct: 3438 **NFRPCC*T*VHQIVTWCSLHPQIQAVPDGCEERVSEWIPE*RSLCGAAKGIC 3599
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 161 bits (407), Expect(2) = 9e-41
Identities = 90/246 (36%), Positives = 139/246 (55%)
Frame = +1
Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
+++LYGLKQ+PR WY R EFL + G+ + G D +++ K++ + ++ +YVDDI+
Sbjct: 3631 KKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFV-KQDAENLMIAQIYVDDIVFGG 3807
Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
S + + +++ EFEM +G LG+ +K+ D +FLSQ Y K ++F M
Sbjct: 3808 MSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDS--IFLSQSRYAKNIVKKFGME 3981
Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
N+ TP H KLS + S D+ Y S +GS++Y + SRPD+ YAV +
Sbjct: 3982 NASHKRTPAPTHLKLSKDEAGTSVDQSL------YRSMIGSLLY-LTASRPDITYAVGVC 4140
Query: 745 SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
+R+ ANP I H +K +L+Y+NG+ G+ Y + L GY DAD+AG+ D RKS
Sbjct: 4141 ARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCS--NPMLVGYCDADWAGSADDRKST 4314
Query: 805 VGFCVY 810
G C Y
Sbjct: 4315 SGGCFY 4332
Score = 25.4 bits (54), Expect(2) = 9e-41
Identities = 33/114 (28%), Positives = 40/114 (34%)
Frame = +3
Query: 442 RNGFIGKEPNLETCEAT*SPKGSWMQVDLQEKGWHSGC*RSKV*SKTCGKGFHSSGGGRL 501
R G I KE +L * W QVDLQE+ C K C + HS RL
Sbjct: 3258 RIGAIQKE*SLGASS*A*GN*CDWHQVDLQEQNQ*RRCHNQKQGQTGCSR-LHSD*RCRL 3434
Query: 502 QRDLFTGGEALFHKDTYGYCESIQS*VGTNGCEDRFLIW*P*RDNLHGTTGRFC 555
D H+ Q +GCE+R W P +L G C
Sbjct: 3435 **DFCPSC*T*VHQIITWCSLYPQIQAVPDGCEERISEWIPE*RSLCGAAKGIC 3596
>BE802806
Length = 285
Score = 140 bits (352), Expect = 3e-33
Identities = 68/94 (72%), Positives = 77/94 (81%)
Frame = -2
Query: 643 MKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQ 702
MKDLG A+R+LGIDI R+R KGELFLSQ YLKK ERFRM SK VSTPLGHHTKLS+
Sbjct: 284 MKDLGSARRILGIDIHRDRAKGELFLSQSNYLKKVVERFRMHQSKPVSTPLGHHTKLSVT 105
Query: 703 QCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPD 736
Q P++ +E+ M TPYA+GVGSIMYGMVCSRPD
Sbjct: 104 QAPETAEERSKMNQTPYANGVGSIMYGMVCSRPD 3
>CO981347
Length = 624
Score = 91.7 bits (226), Expect(3) = 1e-21
Identities = 56/128 (43%), Positives = 72/128 (55%)
Frame = +1
Query: 133 ESVGLCFEKQK*HL*KVQRMAHSHRKSNGN*TKRFKN*QWPGVCFRAV**VLQVERNQEA 192
E G F K +L K+QRM +S+ KS K FK+*QWPGVCFRAV *VLQ R+Q+A
Sbjct: 67 EEYGCMF*KISQNLLKIQRMTYSYWKSTWYKIKSFKD*QWPGVCFRAVQ*VLQENRHQKA 246
Query: 193 *NRTKNTATKWPCGTHE*DTFGACEVYDSRSWVT*EFLG*SRDNGCLFDQ*MSINGNRLQ 252
N +T +W E D FG EV+ ++ + LG S + +FD *M R Q
Sbjct: 247 QNSPSHTIAEWFSRKDEYDHFGKSEVHATKCKTAKDLLGRSCKHNIIFD**MPFINLRFQ 426
Query: 253 DTYGGMEW 260
DT G +EW
Sbjct: 427 DTNGSLEW 450
Score = 27.3 bits (59), Expect(3) = 1e-21
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 117 SWGRFLFSFYH**LL*ESVGLCFEK 141
SW + + S +H * L +S+ +CFEK
Sbjct: 20 SWWKLILSHHHR*FLKKSMAVCFEK 94
Score = 23.1 bits (48), Expect(3) = 1e-21
Identities = 15/49 (30%), Positives = 25/49 (50%)
Frame = +2
Query: 261 ETGGLLLFEGFRSFGICAYQARQA*A*SFEMCLHWLSGRCEGI*VVKIG 309
ET L +G G+ + R+A ++C+HWLS R + ++IG
Sbjct: 452 ETT*LFRIKGVWITGL*SC*TRKAGCKGCKVCVHWLS*RS*KVQAMEIG 598
>TC232995
Length = 1009
Score = 93.6 bits (231), Expect = 4e-19
Identities = 54/163 (33%), Positives = 92/163 (56%)
Frame = +2
Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
+++LYGLKQ+PR WY R FLL+ F R D+ +++ +K+ ++L + +YVDDI+ S
Sbjct: 59 QKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHNDILL-VQIYVDDIIFGS 235
Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
++ + + EFEM +G K LG+ IK+ + +F++Q Y K+ +RF M
Sbjct: 236 TNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQT--Q*GIFINQSKYCKELIKRFGMD 409
Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIM 727
++K +STP+ + L + QS D KQ Y +G ++
Sbjct: 410 SAKHMSTPMSTNCYLDKDESGQSIDIKQ------YRDAIGEVV 520
>CO982036
Length = 674
Score = 89.0 bits (219), Expect = 9e-18
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 2/208 (0%)
Frame = -2
Query: 605 KNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKG 664
K + +YLL+YVD I++ SS I L +LN F +K LG + I++K D
Sbjct: 670 KTHILTVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPD-- 500
Query: 665 ELFLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEG-TPYASGV 723
L S + + R ++ +S+P+ C S+ + L G T Y S V
Sbjct: 499 -LLFSLRTSIFEIFCRKPR*QAQPISSPM-------TTTCKLSKSDSDLFSGPTFYRSVV 344
Query: 724 GSIMYGMVCSRPDLAYAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDE 783
G++ Y V RP++++AV+ V +FM+NP HW +K +LRYL GSL GL A +
Sbjct: 343 GALQYTTVI-RPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQ 167
Query: 784 D-ALEGYVDADYAGNVDTRKSLVGFCVY 810
+ G+ DAD+A VD ++S G V+
Sbjct: 166 PLPIRGFCDADWASAVDDKRSTSGAAVF 83
>BI321712
Length = 399
Score = 87.8 bits (216), Expect = 2e-17
Identities = 49/136 (36%), Positives = 84/136 (61%)
Frame = -3
Query: 613 LLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLG 672
L LYVDD++ ++ + K+ ++ EFEM D+G LGI++K+ DKG +F++Q G
Sbjct: 385 LCLYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQ-EDKG-IFITQEG 212
Query: 673 YLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVC 732
Y K+ ++F+M ++ V TP+ +KLS ++ + ++ T Y S +GS+ Y + C
Sbjct: 211 YAKEVLKKFKMDDANPVGTPMECGSKLS------KHEKGENVDPTLYKSLIGSLRY-LTC 53
Query: 733 SRPDLAYAVSIVSRFM 748
+RPD+ Y V +VSR+M
Sbjct: 52 TRPDILYVVGVVSRYM 5
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 83.6 bits (205), Expect = 4e-16
Identities = 61/203 (30%), Positives = 101/203 (49%)
Frame = +3
Query: 601 YMLKKNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRN 660
Y + ++ L + +YVDDI+ ++SK + E + FE G K +LG+ I +
Sbjct: 459 YSERLKKETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQK 638
Query: 661 RDKGELFLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYA 720
+F+ Q Y K +RFRM +K ++TP+ T + + K+ Y+
Sbjct: 639 --VYGIFIHQEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KE------YS 794
Query: 721 SGVGSIMYGMVCSRPDLAYAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAA 780
+ S+ Y + SRPD+ + V + +RF + P I H A+K +LRYL G+ L + +
Sbjct: 795 GMIDSLSY-LTSSRPDIVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKK-- 965
Query: 781 QDEDALEGYVDADYAGNVDTRKS 803
+ E L GY D +AG+ RKS
Sbjct: 966 RSEFDLLGYCDVYFAGDKVERKS 1034
Score = 37.4 bits (85), Expect = 0.031
Identities = 17/48 (35%), Positives = 24/48 (49%)
Frame = +2
Query: 568 LYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLL 615
+YGLKQ+ R WY R FL+ GF R D ++ + + Y L
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNLSYYSYL 505
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 80.1 bits (196), Expect = 4e-15
Identities = 57/159 (35%), Positives = 82/159 (50%), Gaps = 4/159 (2%)
Frame = -2
Query: 566 ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
+SLYGLKQ+ R+WY + LLK G+++S D ++ L K LL+YVDDI++A
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKG-NTFTALLVYVDDIILAGD 244
Query: 626 SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGY----LKKGGERF 681
S DE ++K L+ F++K+LG K LG+++ +R + +SQ Y LK G
Sbjct: 243 SIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSR--LGITISQRKYCLDLLKDSG--- 79
Query: 682 RMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYA 720
+ K STPL KL GTPYA
Sbjct: 78 -LLGCKPASTPLDTSIKL------------HSAAGTPYA 1
>BM143109
Length = 415
Score = 74.7 bits (182), Expect = 2e-13
Identities = 44/120 (36%), Positives = 65/120 (53%)
Frame = +1
Query: 568 LYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASSSK 627
LYGLKQ+ R WY +FLL GF + D+ +++ KK ++L + +YVDDI+ S++
Sbjct: 64 LYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLNDILL-VQIYVDDIIFGSTND 240
Query: 628 DEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSNSK 687
K + + EFEM + LG+ IK+ K +F+SQ Y K RF M N K
Sbjct: 241 SLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQT--KNGIFISQSKYCKDLIHRFGMENDK 414
>NP005470 reverse transcriptase
Length = 267
Score = 74.3 bits (181), Expect = 2e-13
Identities = 33/56 (58%), Positives = 41/56 (72%)
Frame = +1
Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDI 620
+ SLYGLKQSPR+WY FD F+ GF RS YD CVY K + +++YLLLYVDD+
Sbjct: 100 QRSLYGLKQSPRQWYMSFDSFITNQGFKRSLYDCCVYHNKVEDGLMIYLLLYVDDM 267
>BE211208
Length = 413
Score = 68.6 bits (166), Expect = 1e-11
Identities = 43/143 (30%), Positives = 77/143 (53%)
Frame = +2
Query: 605 KNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKG 664
K ++ ++YLL+YVDDI++ S I L LN F +K LG LGI++ + G
Sbjct: 8 KKDRNLVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEV-HHTPTG 184
Query: 665 ELFLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVG 724
+ L+Q Y+ + M+ +K +S+P+ + +LS + L + T Y S VG
Sbjct: 185 SVLLTQSKYICDLLHKTDMAEAKPISSPMVTNLRLS------KNGDDLLSDPTMYRSVVG 346
Query: 725 SIMYGMVCSRPDLAYAVSIVSRF 747
++ Y + +RP++++A + V +F
Sbjct: 347 ALQYPTI-TRPEISFAANKVCQF 412
>TC234745 weakly similar to UP|Q9FFM0 (Q9FFM0) Copia-like retrotransposable
element, partial (5%)
Length = 494
Score = 68.2 bits (165), Expect = 2e-11
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = -2
Query: 464 SWMQVDLQEKGWHSGC*RSKV*SKTCGKGFHSSGGGRLQRDLFTGGEALFHKDTYGYCES 523
SWMQV LQEK HS C +V KTCG GF++SG L + T G+ LF+KD G C+S
Sbjct: 265 SWMQVGLQEKEKHSKCEEVEVQGKTCG*GFYTSGQS*L**NFLTCGKTLFYKDLDGNCKS 86
Query: 524 IQS*VGTNGCEDRF 537
+ S V GC+D F
Sbjct: 85 V*SGVTIIGCQDNF 44
>AW185460
Length = 411
Score = 67.8 bits (164), Expect = 2e-11
Identities = 34/75 (45%), Positives = 48/75 (63%)
Frame = +2
Query: 733 SRPDLAYAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDA 792
+RPD+ YA S++SRFM +P +H+ A K +LRYL G+ G+ YT E L GY D+
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSE--LLGYTDS 265
Query: 793 DYAGNVDTRKSLVGF 807
D+AG+ D KS G+
Sbjct: 266 DWAGSTDDMKSTSGY 310
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 65.5 bits (158), Expect = 1e-10
Identities = 42/132 (31%), Positives = 71/132 (52%)
Frame = +1
Query: 611 LYLLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQ 670
L + LYVDD+L+ + + K+ + FEM +LG LGI+IK++++K + + Q
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNK--VLICQ 366
Query: 671 LGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGM 730
Y K+ ++F+M K+VSTP+ K + DE Y S +G +MY +
Sbjct: 367 RKYAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGY------YRSLIGCLMY-L 525
Query: 731 VCSRPDLAYAVS 742
+RPD+ +A+S
Sbjct: 526 TATRPDILFAIS 561
>AW759031 weakly similar to GP|22093573|db polyprotein {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 430
Score = 65.1 bits (157), Expect = 1e-10
Identities = 35/95 (36%), Positives = 53/95 (54%)
Frame = +3
Query: 575 PREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASSSKDEIMKLK 634
PR W+ RF LL+ R D V+ L + +YL++Y+DDI++ D I +LK
Sbjct: 3 PRAWFGRFSSELLQFCMTRYEADHSVFSLHSPSGLCIYLVVYLDDIVITGDDFDGIHRLK 182
Query: 635 ERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLS 669
L+ +F+ KDLGP LGI++ ++ G LF S
Sbjct: 183 SHLHNKFQTKDLGPPNYFLGIEVAQS-SSGFLFPS 284
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 63.2 bits (152), Expect = 5e-10
Identities = 43/144 (29%), Positives = 73/144 (49%)
Frame = +2
Query: 597 DSCVYMLKKNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGID 656
D V+ + +YL++YVDDI++ +I++LKE L F+ KDL K LGI+
Sbjct: 17 DHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFLGIE 196
Query: 657 IKRNRDKGELFLSQLGYLKKGGERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEG 716
+ ++ D + +SQ Y E M N + V +P+ + KL Q D ++
Sbjct: 197 VAQSGD--GVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPER---- 358
Query: 717 TPYASGVGSIMYGMVCSRPDLAYA 740
Y VG ++Y + +RPD+++A
Sbjct: 359 --YRRLVGKLIY-LTITRPDISFA 421
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 60.8 bits (146), Expect = 3e-09
Identities = 33/92 (35%), Positives = 55/92 (58%), Gaps = 1/92 (1%)
Frame = +1
Query: 717 TPYASGVGSIMYGMVCSRPDLAYAVSIVSRFMANPGIVHWQALKWVLRYLNGSLKGGLKY 776
T + +GS+ Y + SRP++ +AVS++SRFM P + H QA K VLR + G++ G+ +
Sbjct: 16 TEFRRLIGSLRY-LCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLF 192
Query: 777 T-RAAQDEDALEGYVDADYAGNVDTRKSLVGF 807
+A + L GY D+D+ + + KS G+
Sbjct: 193 PFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGY 288
>BU550037
Length = 728
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/125 (32%), Positives = 68/125 (54%)
Frame = -3
Query: 637 LNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSNSKTVSTPLGHH 696
+ EFEM DLG K LG+ I ++ D +F+SQ Y + +F M K ++T L +
Sbjct: 363 MESEFEMTDLGQMKYFLGM*IFQSEDG--IFISQKKYAWEILRKFHMERCKPIATVLVVN 190
Query: 697 TKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVSRFMANPGIVHW 756
K S ++E + + Y S +GS++Y + +RP+L +A +++SRF +P VH
Sbjct: 189 EKFS------KDEEDNQGDASVYRSLIGSLLY-LSATRPNLMFAATLLSRFTKSPSQVHL 31
Query: 757 QALKW 761
+ K+
Sbjct: 30 GSSKY 16
>AI855899 similar to GP|2244960|emb| retrotransposon like protein
{Arabidopsis thaliana}, partial (18%)
Length = 418
Score = 54.7 bits (130), Expect = 2e-07
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +1
Query: 683 MSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVS 742
M + +STP+ KLS + L Y VG++ Y + +RP++AY V+
Sbjct: 13 MLDCNGISTPMVSSYKLS------KFGSELLPNAHQYRDIVGALQY-VTLTRPNIAYNVN 171
Query: 743 IVSRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQD-EDALEGYVDADYAGNVDTR 801
VS FM++P + +K +LRYL+G++ GL A D + +L Y D D+ +
Sbjct: 172 KVSEFMSSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEM 351
Query: 802 KSLVGFCVYS 811
+S G C++S
Sbjct: 352 RSTSGSCIFS 381
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.356 0.161 0.595
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,792,699
Number of Sequences: 63676
Number of extensions: 594024
Number of successful extensions: 4897
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 2576
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 2185
Number of HSP's gapped (non-prelim): 2925
length of query: 937
length of database: 12,639,632
effective HSP length: 106
effective length of query: 831
effective length of database: 5,889,976
effective search space: 4894570056
effective search space used: 4894570056
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC130802.9