TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130200.5 - phase: 0 
         (312 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC220196 similar to GB|AAO63361.1|28950875|BT005297 At5g48850 {A...   404  e-113
AI443455 similar to PIR|T45759|T457 MS5-like protein - Arabidops...    84  6e-17
BM308471 similar to PIR|T51865|T51 MS5-like protein [imported] -...    55  4e-08
TC208184 UP|Q39834 (Q39834) Clathrin heavy chain, complete             34  0.097
TC215053 homologue to UP|Q39834 (Q39834) Clathrin heavy chain, p...    31  0.63
TC231584                                                               30  1.1
TC225551 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)          30  1.1
TC228439 similar to UP|Q93VK5 (Q93VK5) At1g31800/68069_m00159, p...    29  2.4
TC234088 homologue to UP|Q94C23 (Q94C23) AT4g13510/T6G15_60, par...    28  5.3
TC204670 similar to UP|Q43499 (Q43499) Peroxidase precursor , pa...    27  9.1
TC219748 similar to GB|AAQ62420.1|34146824|BT010419 At3g12170 {A...    27  9.1
TC227551 homologue to UP|O65879 (O65879) Translation initiation ...    27  9.1

>TC220196 similar to GB|AAO63361.1|28950875|BT005297 At5g48850 {Arabidopsis
           thaliana;} , partial (65%)
          Length = 1185

 Score =  404 bits (1039), Expect = e-113
 Identities = 196/257 (76%), Positives = 229/257 (88%)
 Frame = +3

Query: 56  QLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGLCNKHSQ 115
           +LV+KDPE AIV FWKAIN+GDKVDSALKDMAVVMKQLDR++EAIEAI+SFR LC+K SQ
Sbjct: 219 KLVEKDPEAAIVLFWKAINSGDKVDSALKDMAVVMKQLDRSDEAIEAIRSFRSLCSKQSQ 398

Query: 116 ESLDNVLLDLYKKCGRVEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQET 175
           ESLDNVL+DLYKKCG+++EQIE+LKRKL+LIYQGEAFNG+ TKTARSHGKKFQVSIKQET
Sbjct: 399 ESLDNVLIDLYKKCGKIDEQIEMLKRKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQET 578

Query: 176 ARLLGNLGWAYMQKTNYMMAEVVFKKAQMIDADANKALNLALCLMRQSRYEEAYLILEQV 235
           +RLLGNLGWAYMQK NYMMAEVV++KAQ+ID D NKA NL LCL+RQ+RYEEA L+LE V
Sbjct: 579 SRLLGNLGWAYMQKMNYMMAEVVYRKAQIIDPDCNKACNLGLCLIRQARYEEAQLVLEDV 758

Query: 236 LQGKLPGSDEIKSRNRAEELLVELSANLPQPKFMDDLGLDDDLLKGIDGLLNVWSPTRSR 295
           L+G LPGSD+ K+R RA++L  EL + LP P F D LGLDD+ +KG++ L+N W P RS+
Sbjct: 759 LKGNLPGSDDSKARKRAQDLRTELRSMLPPPHFSDLLGLDDEFIKGLEQLMNEWGPIRSK 938

Query: 296 RLPIFEEISSFRDQLAC 312
           RLPIFEEISSFRDQLAC
Sbjct: 939 RLPIFEEISSFRDQLAC 989


>AI443455 similar to PIR|T45759|T457 MS5-like protein - Arabidopsis thaliana,
           partial (16%)
          Length = 344

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 38/54 (70%), Positives = 45/54 (82%)
 Frame = +3

Query: 32  KEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKD 85
           + + +HV HKVP GDTPYV+AK+ QLV+KDPE AI  FW AINAGD+VDSALKD
Sbjct: 183 RSETFHVAHKVPIGDTPYVRAKNVQLVNKDPERAIPLFWAAINAGDRVDSALKD 344


>BM308471 similar to PIR|T51865|T51 MS5-like protein [imported] - Arabidopsis
           thaliana (fragment), partial (36%)
          Length = 418

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
 Frame = +3

Query: 187 MQKTNYMMAEVVFKKAQMIDADANKALNLALCLMRQSRYEEA----YLILEQVLQGKLPG 242
           MQ+ NY+ AE  +++A  I  D NK  NL +CLM+Q R  EA    Y +   V+ G    
Sbjct: 6   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGS 185

Query: 243 SDEIKSRNRAEELLVELSANLPQPKFMDDLGLDDDLLKGIDGLLNVWSP 291
              +K+  RA+++L +L + +   K +D +     L +   G  ++W P
Sbjct: 186 DSHLKAYERAQQMLKDLESEM-MNKGVDRIE-QSRLFEAFLGSSSIWQP 326


>TC208184 UP|Q39834 (Q39834) Clathrin heavy chain, complete
          Length = 5624

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 32/97 (32%), Positives = 46/97 (46%), Gaps = 5/97 (5%)
 Frame = +3

Query: 51   KAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFR--G 108
            KA H +LV K   VA+       N    V+ AL ++ V  +  DR  E+I+   +F   G
Sbjct: 4443 KAGHLRLV-KPYMVAV-----QSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIG 4604

Query: 109  LCNK---HSQESLDNVLLDLYKKCGRVEEQIELLKRK 142
            L  K   H    +  V   +YKK GR ++ IEL  +K
Sbjct: 4605 LAQKIETHELLEMRRVAAYIYKKAGRWKQSIELCHKK 4715


>TC215053 homologue to UP|Q39834 (Q39834) Clathrin heavy chain, partial (22%)
          Length = 1446

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +2

Query: 51  KAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGL- 109
           KA H +LV K   +A+       N    V+ AL ++ V  +  DR  E+I+   +F  + 
Sbjct: 395 KAGHLRLV-KPYMIAV-----QSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIG 556

Query: 110 ----CNKHSQESLDNVLLDLYKKCGRVEEQIELLKR 141
                 KH    +  V   +YKK GR ++ I L K+
Sbjct: 557 LAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKK 664


>TC231584 
          Length = 780

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +2

Query: 66  IVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGLCNKHSQESLDNVLLDL 125
           I+ +WK +   +KVDS+  D A   +  D  ++  E++ +          + LD+VL  +
Sbjct: 485 IIRWWKWLQNSNKVDSSNTDSAAAHRNQDNPKKTEESVGNCPVCRKPFLAKDLDHVLALV 664

Query: 126 YKKCGRVEEQIELLKRKLRLIYQGEAFNGR 155
                ++    E L  + +L+   +  N R
Sbjct: 665 GSYSSQLSSDNEELNEEEKLLQSEDEINRR 754


>TC225551 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)
          Length = 1482

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/47 (29%), Positives = 26/47 (54%)
 Frame = +2

Query: 20  GISVLKKSSKGKKEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAI 66
           GI VL ++   KK D+Y  I+   +GD  ++  + + L  +D  +A+
Sbjct: 521 GICVLIQNKSEKKGDMYEAIYSFYFGDYGHISVQGSYLTYEDTYLAV 661


>TC228439 similar to UP|Q93VK5 (Q93VK5) At1g31800/68069_m00159, partial (66%)
          Length = 1543

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 232 LEQVLQGKLPGSDEIKSRNRAEELLVELSANLPQPKFMDDLGLDDDLL------KGIDGL 285
           ++ VL  + P  +++K       ++ E     PQP  +    L+DD+L      +G D  
Sbjct: 666 VDSVLGDQYPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDVLGEYPIKRGEDIF 845

Query: 286 LNVWSPTRSRRL 297
           ++VW+  RS +L
Sbjct: 846 ISVWNLHRSPKL 881


>TC234088 homologue to UP|Q94C23 (Q94C23) AT4g13510/T6G15_60, partial (8%)
          Length = 408

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 28  SKGKKEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAIVYFW 70
           S GK +   +++ K+PYGD P  ++   Q+    P   + Y+W
Sbjct: 123 SSGKTKSQKNIMIKIPYGDNPR*QSFQ*QICPSVPR-RLFYYW 248


>TC204670 similar to UP|Q43499 (Q43499) Peroxidase precursor , partial (46%)
          Length = 661

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/80 (21%), Positives = 40/80 (49%)
 Frame = -1

Query: 168 QVSIKQETARLLGNLGWAYMQKTNYMMAEVVFKKAQMIDADANKALNLALCLMRQSRYEE 227
           Q+S+ +  +++L  +   +   +NY      + K   I  D      LAL ++ + R+E 
Sbjct: 334 QLSLWKHHSKVLDQIAEFHANSSNY------YSKINQI*FDYPY---LALLVLNRHRFEG 182

Query: 228 AYLILEQVLQGKLPGSDEIK 247
             +++E+ ++G+  G D ++
Sbjct: 181 IVIVVEEEMKGRWKGQDHLR 122


>TC219748 similar to GB|AAQ62420.1|34146824|BT010419 At3g12170 {Arabidopsis
           thaliana;} , partial (91%)
          Length = 1074

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 36/151 (23%), Positives = 59/151 (38%), Gaps = 25/151 (16%)
 Frame = +1

Query: 4   QKEEKQKGHLCVLEMEGISVLKKSSKGKKEDLYHVIHKVPYGDTPYVKAKHAQLV----- 58
           +K  K+K    V E E I          +  LY V+          +K  + +L      
Sbjct: 46  RKMGKKKKRSRVSEDEEIESDTNPFDKNENSLYQVLGVEKTASQQEIKKAYYKLALRLHP 225

Query: 59  DKDP--EVAIVYFWKAINA----GDKVDSALKDMAVVMKQLDRAEEAIEAIKS-FRGLCN 111
           DK+P  E A   F +  N     GD+   A+ D    +   + A + ++ +K  FR +  
Sbjct: 226 DKNPGDEEAKAKFQQLQNVIAILGDEEKRAVYDQTGFVDDAELAGDVVQNLKEYFRAMYK 405

Query: 112 KHSQESLD-------------NVLLDLYKKC 129
           K ++  ++             N L+DLYKKC
Sbjct: 406 KVTEADIEEFEANYRGSDIEKNDLIDLYKKC 498


>TC227551 homologue to UP|O65879 (O65879) Translation initiation factor,
           complete
          Length = 1632

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/36 (33%), Positives = 22/36 (60%)
 Frame = +2

Query: 247 KSRNRAEELLVELSANLPQPKFMDDLGLDDDLLKGI 282
           ++ N AEE+  E +  +      +++G+ DDLL+GI
Sbjct: 140 RAANPAEEMDFETTEGVKAIASFEEMGIKDDLLRGI 247


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,340,729
Number of Sequences: 63676
Number of extensions: 122848
Number of successful extensions: 610
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of query: 312
length of database: 12,639,632
effective HSP length: 97
effective length of query: 215
effective length of database: 6,463,060
effective search space: 1389557900
effective search space used: 1389557900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)