TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129092.1 - phase: 0 
         (391 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC205949 similar to UP|Q96248 (Q96248) CER3 protein, partial (8%)      28  5.5
CD415511                                                               28  5.5
TC211803 similar to UP|Q76CU2 (Q76CU2) PDR-type ABC transporter ...    28  7.1

>TC205949 similar to UP|Q96248 (Q96248) CER3 protein, partial (8%)
          Length = 832

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 16/36 (44%), Positives = 22/36 (60%)
 Frame = +2

Query: 305 GPLLLDDSWFSTDSFLHHHCKEFFSLVLDGSVIDGD 340
           GPLL+  SWFS++S      K F   +LD S+ DG+
Sbjct: 179 GPLLVPSSWFSSNSTCLLSVKNF---LLDRSLEDGN 277


>CD415511 
          Length = 421

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 291 QLKYGLQKDRKDNTGPLLLDDSWFSTDSFLHHHCKEF 327
           ++   ++ ++K+ TG   +   W+   S+LHH C E+
Sbjct: 356 KMNINMKNEQKNKTGYDPICSKWYHGLSYLHHKCLEY 246


>TC211803 similar to UP|Q76CU2 (Q76CU2) PDR-type ABC transporter 1, partial
           (6%)
          Length = 255

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 90  ERLVKVSEEEDERYRLAVK 108
           ERLVKV+EE++ER+ L +K
Sbjct: 31  ERLVKVAEEDNERFLLKLK 87


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,778,645
Number of Sequences: 63676
Number of extensions: 228949
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of query: 391
length of database: 12,639,632
effective HSP length: 99
effective length of query: 292
effective length of database: 6,335,708
effective search space: 1850026736
effective search space used: 1850026736
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)