BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC129091.17 + phase: 0 /pseudo
(136 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF424994 weakly similar to GP|25082966|gb| spliceosome associate... 72 1e-13
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 37 0.004
TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%) 37 0.004
AW396581 35 0.008
TC215203 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly prote... 33 0.042
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 32 0.093
TC216639 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragme... 32 0.093
TC217235 similar to UP|Q9LW88 (Q9LW88) Arabidopsis thaliana geno... 31 0.21
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 30 0.27
TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 30 0.27
TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protei... 30 0.35
CA783357 30 0.46
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 29 0.60
TC216637 homologue to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Frag... 29 0.60
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops... 29 0.78
AI938007 similar to PIR|T51310|T513 RNA helicase RH28 [imported]... 28 1.0
TC226274 similar to UP|Q8L5W5 (Q8L5W5) VERNALIZATION INDEPENDENC... 28 1.0
TC222174 similar to UP|Q84VI8 (Q84VI8) Beta-ketoacyl-CoA-synthas... 28 1.0
BM527600 similar to PIR|T05883|T058 ATP-dependent helicase F6H11... 28 1.0
TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%) 28 1.3
>BF424994 weakly similar to GP|25082966|gb| spliceosome associated protein -
like {Arabidopsis thaliana}, partial (7%)
Length = 178
Score = 71.6 bits (174), Expect = 1e-13
Identities = 35/57 (61%), Positives = 41/57 (71%)
Frame = +2
Query: 67 QRRMKIAELKQVSSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQG 123
+RRMKIA L + SRPDVVEVWDAT + P LLV L+SY NT VPRH+ Q + L G
Sbjct: 2 KRRMKIAHLTHICSRPDVVEVWDATVSHP*LLVSLQSYENTESVPRHYCQNKTCLPG 172
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 36.6 bits (83), Expect = 0.004
Identities = 19/62 (30%), Positives = 32/62 (50%)
Frame = +3
Query: 10 EKFSFTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRR 69
EK + ++ +KKD EET K+K +D +DE N ++K+K K K +++
Sbjct: 360 EKKEKKDKEKEKKKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKKDKKEKEKDHKKEKK 539
Query: 70 MK 71
K
Sbjct: 540 DK 545
Score = 35.4 bits (80), Expect = 0.008
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = +3
Query: 21 EETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQ 77
E+ +KKD +E KK + ++D E+ N++ E NKKKK ++ K + K+
Sbjct: 360 EKKEKKDKEKEKKKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKKDKKEKEKDHKK 530
Score = 28.1 bits (61), Expect = 1.3
Identities = 17/66 (25%), Positives = 30/66 (44%), Gaps = 3/66 (4%)
Frame = +3
Query: 21 EETDKKDVAEETAATKKKANSDSDYED---EENDNEQKEKGVSNKKKKLQRRMKIAELKQ 77
EE +KD E+ K +D E +END E E+ KKK+ + + + ++
Sbjct: 15 EEKKEKDKKEKKKKENKDKGDKTDVEKVKGKENDGEDDEEKKEKKKKEKKDKDGKTDAEK 194
Query: 78 VSSRPD 83
+ + D
Sbjct: 195IKKKED 212
Score = 25.8 bits (55), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +3
Query: 16 EVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKE 56
E ++ +KKD +T A K K D +DEE ++K+
Sbjct: 132 EKKEKKKKEKKDKDGKTDAEKIKKKEDDGKDDEEKKEKKKK 254
>TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%)
Length = 490
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 21 EETDKKDVAEETAATKKKANSDSDYEDEEN-----DNEQKEKGVSNKKKKLQRRMKIAEL 75
++ +KKD EET K+K +D +DE N D ++KEK +KK ++ K
Sbjct: 181 KKKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKKDKKEKEKDHKKEKKDIEEGEKEDSK 360
Query: 76 KQVSSRPDVVEVWDATAAD 94
+ S R +E T D
Sbjct: 361 VEASVRDIDIEEKKVTGKD 417
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Frame = +3
Query: 21 EETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKG----------VSNKKKKLQRR 69
++ +KKD EET K K + +E + E +EKG + K KK +RR
Sbjct: 78 KKKEKKDKDEETDTLKGKGKNGEW*REEGKEREGEEKGKEGQR*RNRHIKGKGKK*RRR 254
>AW396581
Length = 401
Score = 35.4 bits (80), Expect = 0.008
Identities = 18/67 (26%), Positives = 33/67 (48%)
Frame = -1
Query: 10 EKFSFTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRR 69
+K +V E+ +KK ++ K A ED+ DNE+KE+ KKK+ +
Sbjct: 296 DKTDVEKVKGKEDKEKKKKEKKVKDDKTDAEKVKGKEDDGEDNEEKEEKKKKKKKEKDDK 117
Query: 70 MKIAELK 76
+ + ++K
Sbjct: 116 IDVEKVK 96
Score = 28.5 bits (62), Expect = 1.0
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = -1
Query: 12 FSFTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMK 71
+S++ + +E D +D AEE KKK D +D++ D E+ + +KKK ++++K
Sbjct: 392 YSYSLLIKVKEHDGED-AEEKKEKKKKEKKD---KDDKTDVEKVKGKEDKEKKKKEKKVK 225
Score = 26.6 bits (57), Expect = 3.9
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Frame = -1
Query: 6 RKIFEKFSFTEVAASEETDKKDVAEETAATKKKANSDSDY---------EDEENDNEQKE 56
+K+ + + E +E D +D E+ KKK D ED+ D +KE
Sbjct: 236 KKVKDDKTDAEKVKGKEDDGEDNEEKEEKKKKKKKEKDDKIDVEKVKGKEDDGEDEGKKE 57
Query: 57 KGVSNKKKK 65
K KK K
Sbjct: 56 KKKKEKKDK 30
>TC215203 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly protein 1-like
protein 1, partial (31%)
Length = 729
Score = 33.1 bits (74), Expect = 0.042
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 14 FTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQ 67
FT AA + + D A+ + + + EDE+ ++E+++KG S K KLQ
Sbjct: 197 FTGEAAQSDFEDIDEADYEDEEGDDDDDEDEDEDEDGEDEEEKKGKSKSKSKLQ 358
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 32.0 bits (71), Expect = 0.093
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +1
Query: 7 KIFEKFSFTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKL 66
KI E E + +++D+ D + + A+SDSD E ++ +++ +E NKK L
Sbjct: 148 KIVEPKKDNEEDSDDDSDEDDDFGSSDEEMEDADSDSDDESDDKEDDDEETHPKNKKADL 327
Query: 67 QRR 69
++
Sbjct: 328 GKK 336
>TC216639 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragment), partial
(22%)
Length = 711
Score = 32.0 bits (71), Expect = 0.093
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Frame = +2
Query: 18 AASEETDKKDVAEETAA--------TKKKANSDSDYEDE---ENDNEQKEKGVSNKKKKL 66
AA E + KD ET A TKKK +D ED+ + + + E S +KKK
Sbjct: 140 AAIESAENKDTEMETEAPAEVSGKKTKKKKQKAADAEDDVAIDTNGDAVEDHKSERKKKK 319
Query: 67 QRRMKIAELKQVSSRPD 83
+ + K+ + +V + +
Sbjct: 320 KEKRKLEQEMEVDDQAE 370
Score = 25.8 bits (55), Expect = 6.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 3 EEFRKIFEKFSFTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNK 62
+E RK+ ++ + A + + +E+ KKK DS+ E E K+K +K
Sbjct: 320 KEKRKLEQEMEVDDQAEDDGANGV-TSEQEGTAKKKNKKDSNGEAFEAGEVSKKKKKKSK 496
Query: 63 KKKLQ 67
KK ++
Sbjct: 497 KKDIE 511
>TC217235 similar to UP|Q9LW88 (Q9LW88) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MSL1, partial (36%)
Length = 1253
Score = 30.8 bits (68), Expect = 0.21
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 16 EVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKK 63
+V S DKKD +A+K D +D END++ + +KK
Sbjct: 208 DVTESGNEDKKDATHNESASKLDKEKTGDGKDSENDDKNENTNNVDKK 351
Score = 30.8 bits (68), Expect = 0.21
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Frame = +1
Query: 13 SFTEVAASEETDKKDVAEETAATK-----KKANSDSDYEDEENDNEQKEKGVSNKK 63
S T A + T+ KD AEE+ A K K++ D D+E + + E G +KK
Sbjct: 73 SKTNEAEDKLTESKDAAEESNADKEHTAEKESTDDESKVDKEQNKDVTESGNEDKK 240
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 30.4 bits (67), Expect = 0.27
Identities = 16/52 (30%), Positives = 30/52 (56%)
Frame = +1
Query: 14 FTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKK 65
FT AA + D+ + E+ ++ + D D ED+E++++++E KKKK
Sbjct: 961 FTGEAA--QGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKKK 1110
>TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (14%)
Length = 1433
Score = 30.4 bits (67), Expect = 0.27
Identities = 17/66 (25%), Positives = 34/66 (50%)
Frame = +2
Query: 20 SEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQVS 79
S + +K+ TKK ++ SDY+D E+ +E++ +KKK ++++ + S
Sbjct: 443 SGDHEKRKEKSSKRKTKKSSSETSDYDDFESSSEEE-----RRKKKQSKKLRDRGSRSDS 607
Query: 80 SRPDVV 85
S D +
Sbjct: 608 SDSDSI 625
>TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protein, partial
(19%)
Length = 712
Score = 30.0 bits (66), Expect = 0.35
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 30 EETAATKKKANSDSDYEDEEND----NEQKEKGVSNKKKK 65
EET K+K +D +DEEN ++KEK +KK+K
Sbjct: 7 EETDTLKEKGKNDEGEDDEENKKNKKKDKKEKEKDHKKEK 126
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/61 (24%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Frame = +1
Query: 22 ETDKKDV-AEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSS 80
E +D+ EET +K + + D E + ++KE +KKK+ + K +L +
Sbjct: 172 EVSVRDIDIEETTKEGEKEDKEKDDGKEVKEKKKKEDKDKKEKKKVTGKDKTKDLSALKQ 351
Query: 81 R 81
+
Sbjct: 352 K 354
>CA783357
Length = 405
Score = 29.6 bits (65), Expect = 0.46
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 4/70 (5%)
Frame = +1
Query: 20 SEETDKKD-VAEETAATKKKANSDS---DYEDEENDNEQKEKGVSNKKKKLQRRMKIAEL 75
SE+T V EE KK+A+ DS + EDEE+ ++ K+ KK R +++
Sbjct: 55 SEQTSTDGPVFEEFIPLKKRASQDSVEEEDEDEEHFHKHKKTATDKKKSDWLRSVQLWNP 234
Query: 76 KQVSSRPDVV 85
++ DVV
Sbjct: 235 NPPPTKEDVV 264
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 29.3 bits (64), Expect = 0.60
Identities = 14/63 (22%), Positives = 34/63 (53%)
Frame = +3
Query: 21 EETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSS 80
++ D +D+ E+ + + + EDE++D+++ ++ S KKK R ++ + +Q
Sbjct: 213 DDEDDEDIEED--------DDEEEEEDEDDDDDEDDEEESKTKKKKSGRAQLGDGQQGER 368
Query: 81 RPD 83
P+
Sbjct: 369 PPE 377
>TC216637 homologue to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragment),
partial (8%)
Length = 450
Score = 29.3 bits (64), Expect = 0.60
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 3 EEFRKIFEKFSFTEVAASEETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNK 62
+E RK+ ++ + A + + +E KKK DS+ E E E K+K +K
Sbjct: 81 KEKRKLEQEMEVDDQAEDDGANGVTSEQEGTVKKKKNKKDSNGEALEAGGESKKKKKKSK 260
Query: 63 KK 64
KK
Sbjct: 261 KK 266
>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
thaliana}, partial (28%)
Length = 668
Score = 28.9 bits (63), Expect = 0.78
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 21 EETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKK 65
EE D +D E A + DSD ED+++DN+ + G +K+
Sbjct: 428 EEADPEDDPEANGAGGSNDDDDSD-EDDDDDNDGDDDGEDEDEKE 297
>AI938007 similar to PIR|T51310|T513 RNA helicase RH28 [imported] -
Arabidopsis thaliana, partial (4%)
Length = 418
Score = 28.5 bits (62), Expect = 1.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 32 TAATKKKANSDSDY-EDEENDNEQKEKGVSNKKKKLQRR 69
T TKKK N + +D+E D Q +K KKK ++R
Sbjct: 49 TLNTKKKKNPKKNQSQDQEQDQNQSQKEKEKKKKGTKKR 165
>TC226274 similar to UP|Q8L5W5 (Q8L5W5) VERNALIZATION INDEPENDENCE 4, partial
(4%)
Length = 664
Score = 28.5 bits (62), Expect = 1.0
Identities = 16/65 (24%), Positives = 36/65 (54%), Gaps = 5/65 (7%)
Frame = -1
Query: 22 ETDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKG-----VSNKKKKLQRRMKIAELK 76
ET+++D E + K+ +++ +YEDEE + E E+ S+++++ + + K E +
Sbjct: 637 ETEEED--ERXPSRKRDEDTEPEYEDEEEEEEHYEEAEQVNDASDEEEEEEPKQKNKEFR 464
Query: 77 QVSSR 81
+ R
Sbjct: 463 GSAKR 449
>TC222174 similar to UP|Q84VI8 (Q84VI8) Beta-ketoacyl-CoA-synthase, partial
(43%)
Length = 701
Score = 28.5 bits (62), Expect = 1.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 81 RPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHW 114
R + WDA A +L++ L+++ + P+P HW
Sbjct: 203 RASTLVEWDAVQASFQLIL-LRTFSKSTPIPMHW 301
>BM527600 similar to PIR|T05883|T058 ATP-dependent helicase F6H11.20 -
Arabidopsis thaliana, partial (8%)
Length = 422
Score = 28.5 bits (62), Expect = 1.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 46 EDEENDNEQKEKGVSNKKKKLQRRMKIAELKQ 77
E+EEN+N G S+KKKK ++ +E+K+
Sbjct: 124 EEEENENNTDSDGESSKKKKKKKVEGESEVKE 219
>TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%)
Length = 843
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +2
Query: 23 TDKKDVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIA 73
T +VAE +KKA + + ++EE+ E++E+ ++ + + + +A
Sbjct: 626 TFNDEVAERKGKLQKKAKEEGEEKEEESVKEEEEEEEEERRDRDDKSVSVA 778
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.125 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,365,339
Number of Sequences: 63676
Number of extensions: 64065
Number of successful extensions: 1155
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of query: 136
length of database: 12,639,632
effective HSP length: 87
effective length of query: 49
effective length of database: 7,099,820
effective search space: 347891180
effective search space used: 347891180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC129091.17