BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC129091.14 + phase: 0
(439 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229652 121 5e-28
TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 37 0.013
TC206956 weakly similar to UP|Q6GUG3 (Q6GUG3) Serine/proline-ric... 37 0.023
TC224979 similar to UP|Q09083 (Q09083) Hydroxyproline-rich glyco... 36 0.030
TC233874 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-ric... 33 0.19
TC215079 similar to UP|Q6H730 (Q6H730) Ribosomal protein L12-lik... 33 0.19
TC220209 similar to GB|AAT41833.1|48310526|BT014850 At3g45020 {A... 33 0.25
TC222042 weakly similar to UP|Q9LEU3 (Q9LEU3) Zinc finger-like p... 33 0.25
TC231532 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transac... 33 0.33
TC224791 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 33 0.33
TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 32 0.43
TC228814 homologue to UP|O82464 (O82464) Late embryogenic abunda... 32 0.43
TC204070 similar to UP|Q39835 (Q39835) Extensin, partial (34%) 32 0.43
TC203832 similar to UP|O24482 (O24482) Sali3-2, partial (72%) 32 0.57
TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 32 0.57
TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%) 32 0.74
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly... 32 0.74
TC220143 31 0.97
BQ741699 homologue to GP|3204132|emb extensin {Cicer arietinum},... 31 0.97
TC224723 hydroxyproline-rich glycoprotein 31 0.97
>TC229652
Length = 1485
Score = 121 bits (304), Expect = 5e-28
Identities = 82/284 (28%), Positives = 131/284 (45%), Gaps = 5/284 (1%)
Frame = +3
Query: 159 CKLRFFMTWISPLKAFGDRELLSVESLFKSHPKACLVIVSKSMDSDKGTQILRPFVKNGF 218
C R FM W SP + R +ESL HP AC+V+ S++++ D FVK+G+
Sbjct: 345 CVTRVFMVWNSPPWMYTVRHQRGLESLLFHHPDACVVVFSETVELDFFKD---SFVKDGY 515
Query: 219 RVIAIEPDFNYIFKNTHAESWFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDA 278
+V P+ + + K+ A + + + + S L+RL+ LYK+GGIY+D+
Sbjct: 516 KVAVAMPNLDELLKDMPAHIFASVWFEWKKTN---FYSTHYSELIRLAALYKYGGIYLDS 686
Query: 279 DIIIMKSFSKFRNTIGAQNIDVKTKKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKW 338
DII++K S N++G + S LN AV+ F + + + +EEF +T+D
Sbjct: 687 DIIVLKPISFLNNSVGMEGHGA----GSALNGAVMSFPRHSLFVKECLEEFYMTYDDTSL 854
Query: 339 GHNGPYLISRVVSRVSGREG-----YNFSVVPPSAFYPVDWRGIKSLFRGPGDEIHSKWL 393
NG L++RV + G E V P F+PV + I F P E
Sbjct: 855 RGNGADLLTRVARKYLGDENKSVKHLELKVEPSYIFFPVSSQNITRYFIAPTTETEKAQQ 1034
Query: 394 VKKMVQIRKESYAVHLWNRQSGKLEVVKGSIIDSIISSCCIFCN 437
+ I S H WN + L S++ +++ CI C+
Sbjct: 1035DVLLENILHNSLTFHFWNSVTFSLIPEPDSLVSKLLNYACIRCS 1166
>TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (67%)
Length = 1240
Score = 37.4 bits (85), Expect = 0.013
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Frame = +1
Query: 4 HTKHHHNPFLYFPLLLL------HKLHHFLHNFKKKI----LSILFKLPTSFFALLVLFL 53
HT +H+P L+ PLLLL H LHH H+ I L ++ LPT+
Sbjct: 382 HTIINHHPHLHHPLLLLTIINLPHHLHHPHHHLIIIIPHLHLKSMYTLPTTTTHHHHHLH 561
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPPPSHT 84
L + T I++ HH H PLLLPP + T
Sbjct: 562 LHHLPIT---INLLHH---HPPLLLPPTTTT 636
Score = 34.7 bits (78), Expect = 0.087
Identities = 29/92 (31%), Positives = 37/92 (39%), Gaps = 16/92 (17%)
Frame = +1
Query: 4 HTKHHHNPFLYFPLLLL------HKLHHFL----------HNFKKKILSILFKLPTSFFA 47
HT +H+P L+ PLLLL H LH FL H +L + LP
Sbjct: 142 HTIINHHPHLHHPLLLLTIINLPHHLHQFLNPHTIITLHPHLHHPLLLLTIINLPHHLHQ 321
Query: 48 LLVLFLLAYNAFTVFCIHIPHHYSPHKPLLLP 79
L N T+ +H+ HH LLLP
Sbjct: 322 FL-------NPHTIITLHLHHHL-----LLLP 381
Score = 29.6 bits (65), Expect = 2.8
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +1
Query: 4 HTKHHHNPFLYFPLLLLHKLHHFLHNFKKKILSI-LFKLPTSFFAL----LVLFLLAYNA 58
H HHH + PL L LHH L K + + L LPT+ L +L L A
Sbjct: 697 HLHHHHLHTITNPLHLHLHLHHLLTTIKVLLHHLPLLILPTTTNPLHHQRRILHLTTM*A 876
Query: 59 FTVFCIHIPHHYSPHKPLLLP 79
+ HH H LLLP
Sbjct: 877 LHHLLHLLLHHTITHHHLLLP 939
>TC206956 weakly similar to UP|Q6GUG3 (Q6GUG3) Serine/proline-rich repeat
protein, partial (28%)
Length = 788
Score = 36.6 bits (83), Expect = 0.023
Identities = 41/180 (22%), Positives = 67/180 (36%), Gaps = 7/180 (3%)
Frame = +1
Query: 65 HIPHHYSPHKPLLLPPPSHTKTKLSSSVFFAHKEDNSPII------NKTHFPLLHKISIH 118
HIPHH++ H PL + P HT +L + H I+ T + LLH
Sbjct: 310 HIPHHHTLHSPLHILLPHHTH-RLLQLILHLHTHHLQAILLEYTLHRHTDWDLLH----- 471
Query: 119 KFKRVKKHKRGLKTLHSDTKFPLFQKRLGAFFNGNSSSCSCKLRFFMTWISPLKAFGDRE 178
+K K+ L+ +P F L F + S SC +
Sbjct: 472 --SPPRKRKQHQHALYITIHYPCFSMFLTIFLLHHFSGFSCSI----------------S 597
Query: 179 LLSVESLFKSHPKACLVIVSKSMDSDKGTQILRPFVKNGF-RVIAIEPDFNYIFKNTHAE 237
+V SL ++P +L FV++ F + + P F +I+ +TH++
Sbjct: 598 NAAVLSLIATYPNIY-------------AGLLDGFVEHNFDATLHLTPFFVFIYSSTHSQ 738
>TC224979 similar to UP|Q09083 (Q09083) Hydroxyproline-rich glycoprotein
precursor, partial (32%)
Length = 693
Score = 36.2 bits (82), Expect = 0.030
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 14/145 (9%)
Frame = +2
Query: 4 HTKHHHNPFLYFPLLLLHKLHHFLHNFKKKI-LSILFKLPTSFFALLVLFLLAYNAFTVF 62
H H N +LLLH+ H + L L + T+ L L LL + T+
Sbjct: 38 HLPHQRNHITI--ILLLHQRSHITTTLHPHLHLPHLTRSHTTITLHLHLHLLHQRSHTIT 211
Query: 63 CIHIPHHYSPHKPLLLPPP--------SHTKTKLSSSVFFAHKEDNSPIINKTHFPLLHK 114
H PHH H L P SHT T L + H+ + TH PLLH
Sbjct: 212 IPH-PHHLRSHITTTLHPHLHLPHLTRSHTTTTLPHHLHHHHQRSRT---TTTHHPLLHL 379
Query: 115 ISIHKFKRVKKHKRGLK-----TLH 134
+ + H K TLH
Sbjct: 380 LHLSHTTTTHHHPHQRKNHTTTTLH 454
>TC233874 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (10%)
Length = 427
Score = 33.5 bits (75), Expect = 0.19
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 3 DHTKHHHNPFLY---FPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAF 59
++ HHH L+ FP+L H LH+ H + LP + L +N
Sbjct: 15 NNINHHHGCTLHPHTFPILRSHSLHYLRHQPPPSPPLLPPLLPNA---------LLFNPS 167
Query: 60 TVFCIHIPHHYSPHK--PLLLPPPSH 83
H P PH+ P LLPPP H
Sbjct: 168PSPHSHTPPEDPPHRPPPPLLPPPPH 245
>TC215079 similar to UP|Q6H730 (Q6H730) Ribosomal protein L12-like protein,
partial (9%)
Length = 711
Score = 33.5 bits (75), Expect = 0.19
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = -3
Query: 22 KLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFTVFCIHIP 67
K+H+F H+F L I F P ++ LFLL+ F F H+P
Sbjct: 454 KMHYFNHSFHNFFLKIAFFNPRRTLSVQKLFLLSLLLFMHFDFHLP 317
>TC220209 similar to GB|AAT41833.1|48310526|BT014850 At3g45020 {Arabidopsis
thaliana;} , partial (80%)
Length = 1014
Score = 33.1 bits (74), Expect = 0.25
Identities = 24/71 (33%), Positives = 32/71 (44%), Gaps = 9/71 (12%)
Frame = +2
Query: 9 HNPFLYFPLLLLHKLHHFLHNF------KKKILSILFKLPTSF---FALLVLFLLAYNAF 59
HNPFL+F + L H FLH F K+ L + + L + FA LV ++
Sbjct: 65 HNPFLHFTVFLQHSQSRFLHLFLLCSTGKRSTLLVKWDLELNLKLGFASLVQIPWL*SSL 244
Query: 60 TVFCIHIPHHY 70
VF I H Y
Sbjct: 245 LVFPYSISHGY 277
>TC222042 weakly similar to UP|Q9LEU3 (Q9LEU3) Zinc finger-like protein,
partial (7%)
Length = 966
Score = 33.1 bits (74), Expect = 0.25
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Frame = -1
Query: 7 HHHNPFLYFPLLLLHKLHHF-LHNFKKKILSILF----------KLPTSFFALLVLFLLA 55
HH PF+ P +++H LHH+ LH +K +P + LL+ +
Sbjct: 771 HHDGPFMKRPAVIIHFLHHWQLH*MQKPSTQQGLVQSWT*QKQQMIPPLLYLLLLKSRVV 592
Query: 56 YNAFTVFCIHIPHHYSP------HKPLLLPPPSHTKTKLSSSVFFAHKEDNSPIINKTHF 109
+ V C++ +H+ P + P+ L P ++ K L + F +D+ + H+
Sbjct: 591 NSEVYVKCLN--NHHLPSIL*VLNAPMDLQPWTYCKIDLDHELCFRWTDDHENSV-LVHY 421
Query: 110 PLL 112
P+L
Sbjct: 420 PVL 412
>TC231532 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transactivated
protein A-like {Oryza sativa (japonica cultivar-group);}
, partial (52%)
Length = 732
Score = 32.7 bits (73), Expect = 0.33
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -2
Query: 13 LYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFTVFCIHIPHHYSP 72
L FPL L + HF H +K++ + LP L+ +LL + P H S
Sbjct: 392 LPFPLKYLRQFSHFTHQSQKEVPWAMILLPIPLLCKLIQYLLELIKRNGCFLRNPSHLSK 213
Query: 73 HK 74
H+
Sbjct: 212 HR 207
>TC224791 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (40%)
Length = 607
Score = 32.7 bits (73), Expect = 0.33
Identities = 26/87 (29%), Positives = 39/87 (43%), Gaps = 8/87 (9%)
Frame = +1
Query: 4 HTKHHHNPFLYFPLLLLH--KLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFTV 61
HT +H+P L+ PLLLL L H LH+ P +++ L + +T+
Sbjct: 94 HTIINHHPHLHHPLLLLTIINLPHHLHH------------PHHHLIIIIPHLHLKSMYTL 237
Query: 62 FCIHIPHHYSP---HKPLLL---PPPS 82
HH+ P H P+ + PPPS
Sbjct: 238 PTTTTHHHHHPHLHHLPITI*SPPPPS 318
>TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (47%)
Length = 944
Score = 32.3 bits (72), Expect = 0.43
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = +3
Query: 8 HHNPFLYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFTVFCIHIP 67
HH+P + L++ LHH LH+ + L L + ++ + + +H P
Sbjct: 300 HHHPLPHLHPLIIISLHHHLHHLLHHPIITSLHLHLKSLPLQLPTTISLHHHLLHLLHHP 479
Query: 68 ------HHYSPHKPLL 77
HH+ PH P L
Sbjct: 480 TITSLLHHHLPHPPHL 527
>TC228814 homologue to UP|O82464 (O82464) Late embryogenic abundant protein,
partial (98%)
Length = 688
Score = 32.3 bits (72), Expect = 0.43
Identities = 25/79 (31%), Positives = 38/79 (47%)
Frame = -3
Query: 1 MEDHTKHHHNPFLYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFT 60
++ HT+ H + Y LL H FL NFK +++ L ++F LV + A +
Sbjct: 473 IKTHTQTHTH*NNYNKTLLPHNFFSFLGNFKLRLIYFYAFLFSTFSTRLV-----HGAES 309
Query: 61 VFCIHIPHHYSPHKPLLLP 79
F H+ +SPH L LP
Sbjct: 308 SFASHLLVPFSPH--LFLP 258
>TC204070 similar to UP|Q39835 (Q39835) Extensin, partial (34%)
Length = 596
Score = 32.3 bits (72), Expect = 0.43
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Frame = +3
Query: 7 HHHNPFLYFPLLLLHKL------HHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFT 60
HHH+P + LLLH L HH H +L K PTS + F +
Sbjct: 153 HHHHPRSHTNTLLLHHLFISTSPHH--HRTNIHLLHHHLKSPTSTHHPHLQFTNTNHHHH 326
Query: 61 VFCIHIPHHYSPHKPLLLPPPSHTKTKLSSSVFFAHKEDNSPIINKTHFPLLHKISIH 118
F PHH+ H H ++++ H +++ I H L H +S+H
Sbjct: 327 RFTSTSPHHHHHHHHHTSTHLLHHPQLITTNHLHHHLRNHTSI----HLHLHHTMSMH 488
>TC203832 similar to UP|O24482 (O24482) Sali3-2, partial (72%)
Length = 914
Score = 32.0 bits (71), Expect = 0.57
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +3
Query: 17 LLLLHKLHHFLHNFKKKILSILF--KLP-----TSFFALLVLFLLAYNAFTVFCIHIPHH 69
L LLH + +H++ +KI++ L LP SF++L + + + N+ + IH H
Sbjct: 42 LWLLHDIAMSMHSYLRKIMAKLLGQTLPFPLHCESFYSLFLQVMNSMNSLSQLMIHSTHK 221
Query: 70 YSPHK 74
+SP K
Sbjct: 222 HSPIK 236
>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (58%)
Length = 856
Score = 32.0 bits (71), Expect = 0.57
Identities = 33/130 (25%), Positives = 47/130 (35%), Gaps = 7/130 (5%)
Frame = +3
Query: 4 HTKHHHNPFLYFPLLLLHKLHHFLHNFKKKI--LSILFKLPTSFFALLVLFLLAYNAFTV 61
H HHH+ L L H HH LH + LPT+ L L L ++
Sbjct: 297 HHPHHHHLPTTTSLHLHHPHHHHLHTTTSHLHHHPHHHHLPTT--TSLHLHHLHHHLHLT 470
Query: 62 FCIHIPHHYSPHKPLLLPPPSHTKTK-----LSSSVFFAHKEDNSPIINKTHFPLLHKIS 116
H+ HH H P ++ H +T ++S+ H + P +H LLH
Sbjct: 471 TTSHLHHHPHHHHPHIITSHLHHQTHHHHLLTTTSLHLHHLHHHHPPTTTSH--LLHHPH 644
Query: 117 IHKFKRVKKH 126
H H
Sbjct: 645 HHHLHTTTSH 674
Score = 30.4 bits (67), Expect = 1.6
Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 9/143 (6%)
Frame = +3
Query: 1 MEDHTKHHHNPFLYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLL-----A 55
+ H HHH P L LH LHH LH S L P ++ L
Sbjct: 387 LHHHPHHHHLPTT--TSLHLHHLHHHLH---LTTTSHLHHHPHHHHPHIITSHLHHQTHH 551
Query: 56 YNAFTVFCIHIPHHYSPHKPL----LLPPPSHTKTKLSSSVFFAHKEDNSPIINKTHFPL 111
++ T +H+ H + H P LL P H ++S H H P
Sbjct: 552 HHLLTTTSLHLHHLHHHHPPTTTSHLLHHPHHHHLHTTTSHPHHH----------LHHPH 701
Query: 112 LHKISIHKFKRVKKHKRGLKTLH 134
L I+ H + H + T H
Sbjct: 702 LLTITSHPHHHLHHHHHPITTNH 770
Score = 28.1 bits (61), Expect = 8.2
Identities = 20/65 (30%), Positives = 27/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 7 HHHNPFLYFPL-LLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFTVFCIH 65
HHH+ L+ + L H HH LH L LPT +L+ T +H
Sbjct: 57 HHHHHLLHITINLPRHHHHHHLH----PTTINLHLLPTKIHTILL-------TTTSHLLH 203
Query: 66 IPHHY 70
PHH+
Sbjct: 204 HPHHH 218
>TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%)
Length = 502
Score = 31.6 bits (70), Expect = 0.74
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 8 HHNPFLYFPLLLLHKLH-HFLHN 29
HH+ YFP+LL+HKLH LHN
Sbjct: 210 HHHLSTYFPVLLIHKLHILILHN 278
>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
(Fragment), partial (86%)
Length = 688
Score = 31.6 bits (70), Expect = 0.74
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Frame = +3
Query: 7 HHHNPFL-----------YFPLLLLHK---LHHFLHNFKKKILSI-LFKLPTSFFAL--- 48
HHH P L + PLLLL LHH L K + + L LPT+ L
Sbjct: 207 HHHPPLLLPPTTTTPHHHHLPLLLLPTTTILHHLLTTIKVLLHHLPLLILPTTTNPLHHQ 386
Query: 49 -LVLFLLAYNAFTVFCIH-IPHHYSPHKPLLLP 79
+L LL +H +PHH H LLLP
Sbjct: 387 RHILHLLTTT*ALHHLLHLLPHHTITHHHLLLP 485
>TC220143
Length = 627
Score = 31.2 bits (69), Expect = 0.97
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Frame = +3
Query: 29 NFKKKILSILFKLPTSFFALLVLFLLAYN--------AFTVFCIHIPHHY 70
NF+ +SIL +FAL+ +FL+A + T+FCIHI HY
Sbjct: 168 NFQTSGVSILVH-SILYFALVCIFLMAIGVHMYTGS*SHTIFCIHIQTHY 314
>BQ741699 homologue to GP|3204132|emb extensin {Cicer arietinum}, partial
(69%)
Length = 431
Score = 31.2 bits (69), Expect = 0.97
Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +1
Query: 4 HTKHHHNPFLYFPLLLLH--KLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAYNAFTV 61
HT +H+P L+ PLLLL L H LH F I L L LL +
Sbjct: 10 HTIINHHPHLHHPLLLLTIINLPHHLHQFLNPHTIITLHLHHH------LLLLPHTI--- 162
Query: 62 FCIHIPHHYSPHKPLLL 78
I HH H PLLL
Sbjct: 163----INHHPHLHHPLLL 201
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 31.2 bits (69), Expect = 0.97
Identities = 22/69 (31%), Positives = 29/69 (41%), Gaps = 2/69 (2%)
Frame = +2
Query: 7 HHHNPFLYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFAL--LVLFLLAYNAFTVFCI 64
HHH+P L+ L++++ LHH L LP + L L LL T
Sbjct: 836 HHHHPHLHHLLIIINPLHH----------HPLLLLPPTTITLHHHHLLLLLLPTTTTLHH 985
Query: 65 HIPHHYSPH 73
H PHH H
Sbjct: 986 HHPHHRRLH 1012
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +2
Query: 5 TKHHHNPF---LYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALL---------VLF 52
T HHH+P L+ LH LH LH+ I +L LP + +L
Sbjct: 974 TLHHHHPHHRRLHIITNPLH-LHLHLHHLLTTIKVLLHHLPLLILPITTNPLHHQRHILH 1150
Query: 53 LLAYNAFTVFCIHI-PHHYSPHKPLLLP 79
LL +H+ PHH H LLLP
Sbjct: 1151 LLTTT*ALHHLLHLLPHHTITHHHLLLP 1234
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,217,281
Number of Sequences: 63676
Number of extensions: 475769
Number of successful extensions: 4871
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 4633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4816
length of query: 439
length of database: 12,639,632
effective HSP length: 100
effective length of query: 339
effective length of database: 6,272,032
effective search space: 2126218848
effective search space used: 2126218848
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC129091.14