TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC128660.9 + phase: 0 /pseudo
         (58 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208180 similar to UP|Q9S7H4 (Q9S7H4) Chorismate mutase CM2  (C...    74  2e-14
BM093460                                                               57  1e-09
TC209920 similar to UP|CHMU_ARATH (P42738) Chorismate mutase, ch...    40  2e-04
AW831334 weakly similar to PIR|S38958|S38 chorismate mutase (EC ...    30  0.19
TC215730 similar to UP|Q9FN50 (Q9FN50) Emb|CAB62636.1 (AT5g23040...    25  6.3

>TC208180 similar to UP|Q9S7H4 (Q9S7H4) Chorismate mutase CM2  (Chorimate
           mutase) , partial (68%)
          Length = 1281

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 32/58 (55%), Positives = 47/58 (80%)
 Frame = +3

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKWVIPL 58
           MKLLTF SVEE V+KR++KK  +F Q++N +++D++   +KFDPS+AS+ Y+ WVIPL
Sbjct: 795 MKLLTFTSVEETVRKRVEKKAVVFGQEVNLNSDDNDNENRKFDPSVASSLYKNWVIPL 968


>BM093460 
          Length = 406

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 25/47 (53%), Positives = 38/47 (80%)
 Frame = +1

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMA 47
           MKLLTF SVEE V+KR++KK  +F Q++N +++D++   +KFDPS+A
Sbjct: 265 MKLLTFTSVEETVRKRVEKKAVVFGQEVNLNSDDNDNENRKFDPSVA 405


>TC209920 similar to UP|CHMU_ARATH (P42738) Chorismate mutase, chloroplast
           precursor  (CM-1) , partial (52%)
          Length = 745

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +2

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDD-NKGKQKFDPSMASTFYEKWVIPL 58
           M+LLT+  VEE +K+R+  K+  + Q++     +   +   K +PS+ +  Y  W++PL
Sbjct: 341 MELLTYPEVEEAIKRRVDMKSKTYGQELVVTTKEHRTEPVYKINPSLVADLYSDWIMPL 517


>AW831334 weakly similar to PIR|S38958|S38 chorismate mutase (EC 5.4.99.5)
           precursor - Arabidopsis thaliana, partial (40%)
          Length = 556

 Score = 30.4 bits (67), Expect = 0.19
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDD-NKGKQKFDPSMASTFYEKWVIPL 58
           M+LLT+  VEE + +R+  KT  + Q++     +   +   K + S+ +  Y  W++ L
Sbjct: 341 MELLTYPEVEEAITRRVVVKTKTYVQELVVTTKEHLTEPVYKINLSLVAYLYSYWIMHL 517


>TC215730 similar to UP|Q9FN50 (Q9FN50) Emb|CAB62636.1 (AT5g23040/MYJ24_3),
            partial (82%)
          Length = 1255

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 2    KLLTFKSVEEMVKKRLKKKTTLFRQDINF 30
            KL+T  +VE +V   LKK T+  ++ IN+
Sbjct: 1041 KLITDYNVERIVSTSLKKSTSNEQEQINY 955


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,150,037
Number of Sequences: 63676
Number of extensions: 17511
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of query: 58
length of database: 12,639,632
effective HSP length: 34
effective length of query: 24
effective length of database: 10,474,648
effective search space: 251391552
effective search space used: 251391552
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)