BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.2 - phase: 0
(377 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231922 116 1e-26
TC233392 110 1e-24
TC231841 98 7e-21
TC222557 69 4e-20
CO979823 95 5e-20
TC211809 79 1e-19
TC213061 89 4e-18
CO984521 88 7e-18
TC221865 88 7e-18
BE660043 67 3e-16
CO986021 82 5e-16
TC222789 75 4e-14
CA851073 75 5e-14
TC222857 74 1e-13
TC233956 74 1e-13
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 74 1e-13
TC231904 similar to GB|AAL25568.1|16648753|AY058152 AT5g16150/T2... 72 3e-13
BG239687 70 1e-12
CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigr... 70 2e-12
TC233056 68 6e-12
>TC231922
Length = 803
Score = 116 bits (291), Expect = 1e-26
Identities = 64/247 (25%), Positives = 115/247 (45%), Gaps = 9/247 (3%)
Frame = -3
Query: 59 SAWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGT-VSFMERFRRLYDL 117
S WW+++ ++ N +++ R+G G FW D W+ + +++ +LY +
Sbjct: 777 SHWWKDLRRLYNQPDFHS---IHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTI 607
Query: 118 SIHKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQ 177
S +L++ +M ++WRRRL +E + V+ N ++ +++Q+ D W+
Sbjct: 606 SRQ*NLTISKMGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWK 427
Query: 178 PNIGDGYTVRGVYQMLMRQEVHNHDVVSDAP--------WHKSVPLKVSICAWRLLRNRW 229
+ Y+ + Y++LM +S AP WH +P + ++ +WRL +R
Sbjct: 426 ADSSGVYSTKSAYRLLMPS-------ISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRL 268
Query: 230 PTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQV 289
PT+ NL RR + D + GC ++E HL HC + LW WI V P
Sbjct: 267 PTRGNLSRRSIPIQDIMCPLCGC-QHEEAGHLFFHCKMTKGLWWESMRWIRVIGALPADP 91
Query: 290 LDHYYQF 296
H+ QF
Sbjct: 90 ASHFIQF 70
>TC233392
Length = 1145
Score = 110 bits (275), Expect = 1e-24
Identities = 64/209 (30%), Positives = 97/209 (45%), Gaps = 4/209 (1%)
Frame = -1
Query: 162 TNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQ-EVHNHDVVSDAPWHKSVPLKVSIC 220
++ +Q PD W+W+ + Y+ R Y++L E + D W +P K SI
Sbjct: 686 SHAQIQQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIF 507
Query: 221 AWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIG 280
AWRL+R+R PTK NL RR V+ D+ LC + E H+ + C LW +TW+
Sbjct: 506 AWRLIRDRLPTKSNLHRRQVVLEDS-LCPFCRIREEDASHIFLECNKIRPLWWESQTWVR 330
Query: 281 VFSVDPQQVLDHYYQFVY---SSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTT 337
V P H+ Q V+ S YN +++ W+ W L RNQ +F N
Sbjct: 329 SLGVSPINKRQHFLQHVHGTPGSKRYNRWKTW----WIALTWSLWKHRNQVIFQNAQFNG 162
Query: 338 VQLLENVKITSLKWLKAKNVCFPFGYHMW 366
++LLE+ W++A F Y+ W
Sbjct: 161 IKLLEDAVFLHWTWIRAMEKDFSMHYNQW 75
>TC231841
Length = 791
Score = 97.8 bits (242), Expect = 7e-21
Identities = 55/202 (27%), Positives = 89/202 (43%), Gaps = 1/202 (0%)
Frame = +3
Query: 166 LQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQEVHNH-DVVSDAPWHKSVPLKVSICAWRL 224
+Q Q D W+W+ + YT + Y +L + D V + W +P K++I AWRL
Sbjct: 45 IQPQQGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIFAWRL 224
Query: 225 LRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSV 284
+R+R PT+ NL R+ + +D + C E+ HL HC +W +W+ + V
Sbjct: 225 IRDRLPTRSNLRRKQIEVDDPR-CPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGV 401
Query: 285 DPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENV 344
P H+ Q +Y R S + WL W + +RN +F+N ++L+
Sbjct: 402 FPNHPRQHFLQHIYGVTA-GMRASRWKWWWLALTWTIWKQRNNMIFSNGTFNANKILDEA 578
Query: 345 KITSLKWLKAKNVCFPFGYHMW 366
WL F Y+ W
Sbjct: 579 IFLIWTWLTHLEKDFSIHYNQW 644
>TC222557
Length = 1002
Score = 68.9 bits (167), Expect(2) = 4e-20
Identities = 50/165 (30%), Positives = 71/165 (42%), Gaps = 7/165 (4%)
Frame = +1
Query: 209 WHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIF 268
W +PLK + AWRL++ R PTK NL RR V N+ +C + E HL +C
Sbjct: 442 WQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNL-MCPFCNRQEEEASHLFFNCPRI 618
Query: 269 GDLWQRIKTW---IGVFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCG----IWVL 321
LW W +GVFS P+Q +Y Q S + LQ W C W +
Sbjct: 619 LPLWWESLAWTKTVGVFSPIPRQ---NYMQHTLIS-----KGKHLQARWKCWWVALTWSI 774
Query: 322 SNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
RN+ +F N A +L+++ W + F Y+ W
Sbjct: 775 WRHRNRIVFLNKAFNGSKLMDDAIFLVWSWFRQLEKGFAQPYNYW 909
Score = 47.0 bits (110), Expect(2) = 4e-20
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Frame = +3
Query: 80 FEESISKRLGNGFNTFFWSDCW-VGTVSFMERFRRLYDLSIHKD---LSVGEMHALGWGE 135
F+ +I ++G G FW DCW + ++ RLY++S + L +G A W
Sbjct: 51 FQSAIDWKVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQQKLILVMGFHSANVW-- 224
Query: 136 DGEAWR--WRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQML 193
W+ WRR L E + + ++ + D W+W+P ++ R Y+ML
Sbjct: 225 ---EWKLEWRRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAYRML 395
Query: 194 M 194
+
Sbjct: 396 L 398
>CO979823
Length = 853
Score = 95.1 bits (235), Expect = 5e-20
Identities = 61/230 (26%), Positives = 100/230 (42%), Gaps = 5/230 (2%)
Frame = -2
Query: 142 WRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQML---MRQEV 198
WRR E + +T + + D WLW+P G Y+ + Y +L + +E+
Sbjct: 792 WRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHYSTKSGYHVLWGELTEEI 613
Query: 199 HNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETI 258
+ D W +P K ++ AWRL+R+R PTK NL RR V+ D +C E
Sbjct: 612 QDADFAEI--WKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQD-MVCPLCNNIEEGA 442
Query: 259 DHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHYYQF--VYSSGCYNPRRSFLQLIWLC 316
HL +C LW +W+ + + PQ H+ Q+ + G + R + W+
Sbjct: 441 AHLFFNCTKTLPLWWESMSWVNLKTAMPQTPRQHFLQYGTDIADGLKSKR---WKCWWIA 271
Query: 317 GIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
W + RN+ +F N ++LE+ + W KA F ++ W
Sbjct: 270 LTWTIWQHRNKVVFQNATFHGNKVLEDALLLLWSWFKALEKDFNLHFNQW 121
>TC211809
Length = 895
Score = 78.6 bits (192), Expect(2) = 1e-19
Identities = 53/193 (27%), Positives = 85/193 (43%), Gaps = 3/193 (1%)
Frame = +2
Query: 177 QPNIGDGYTVRGVYQMLMRQ--EVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDN 234
+P + Y+ + Y++LM E D W+ +P K + AWRL+++R PT N
Sbjct: 185 RPTLFGNYSTKSAYRLLMEATGEFPVDRTYVDL-WNLKIPSKAIVFAWRLIKDRLPTWTN 361
Query: 235 LVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHYY 294
L R V ND++ C E HL HC LW ++W+ P DH+
Sbjct: 362 LRVRQVELNDSR-CPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFL 538
Query: 295 QF-VYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLK 353
Q S+G RR + +W+ WV+ RN +F N + +++E+ + + WLK
Sbjct: 539 QHDNRSAGGVXARR--WKCLWVALTWVIWKHRNGVVFHNHSFDGSKVMEDAILLTWSWLK 712
Query: 354 AKNVCFPFGYHMW 366
F + W
Sbjct: 713 VMEKGFTGPFSFW 751
Score = 35.8 bits (81), Expect(2) = 1e-19
Identities = 18/54 (33%), Positives = 26/54 (47%)
Frame = +1
Query: 124 SVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQ 177
S+G GW + + WRR L E + E L VT+ +PDVW+W+
Sbjct: 34 SMGSQEDTGWE*N---FSWRRPLFDNEIGMAAEFLEELAQVTIHQDRPDVWVWK 186
>TC213061
Length = 823
Score = 88.6 bits (218), Expect = 4e-18
Identities = 59/238 (24%), Positives = 101/238 (41%), Gaps = 6/238 (2%)
Frame = +2
Query: 135 EDGEAWR--WRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQM 192
E G W+ WRR L E E++V + ++ D W+W Y R Y++
Sbjct: 11 ETGWEWQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAYRV 190
Query: 193 LMRQEV--HNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVR 250
+ R+ + D W VP+KV++ AWRLL++ PT+DNL R+ V ++ +C
Sbjct: 191 I-REGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRVELHE-YVCPL 364
Query: 251 GCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHYYQFVYS--SGCYNPRRS 308
+E+ HL HC +W +W+ + P H++Q + G R
Sbjct: 365 CRSMDESASHLFFHCSKILPIWWESLSWVKLVGAFPHHPRHHFHQHSHEVYQGLQGNRWK 544
Query: 309 FLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
+ WL W + RN +F+N +++++ W + F Y+ W
Sbjct: 545 WW---WLALTWTIWKHRNDIIFSNATFNAHKVMDDAVFLIWTWFRHLENDFTSHYNQW 709
>CO984521
Length = 716
Score = 87.8 bits (216), Expect = 7e-18
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 3/220 (1%)
Frame = -2
Query: 150 EEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQEV-HNHDVVSDAP 208
E ++ V L T++ D W W Y+ + Y+ L V D
Sbjct: 712 EIDMAVAFLQQLEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALHHVTVGEEQDGKFKEL 533
Query: 209 WHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIF 268
W VPLKV+I AWRL++++ PTK NL ++ V + LC ET HL HC
Sbjct: 532 WKLRVPLKVAIFAWRLIQDKLPTKANLRKKRVELQE-YLCPLCRSVEETASHLFFHCSKV 356
Query: 269 GDLWQRIKTWIGVFSVDPQQVLDHYYQFVY--SSGCYNPRRSFLQLIWLCGIWVLSNERN 326
LW ++W+ + V P Q H+ Q ++ S G R Q W + + RN
Sbjct: 355 SPLWWESQSWVNMMGVFPYQPDQHFSQHIFGASVGLQGKR---WQWWWFALTYSIWKHRN 185
Query: 327 QRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
+F+N +L+++ WL+ F ++ W
Sbjct: 184 SIIFSNANFDAHKLMDDAVFILWTWLRCFEKDFSLHFNQW 65
>TC221865
Length = 1045
Score = 87.8 bits (216), Expect = 7e-18
Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 6/279 (2%)
Frame = -3
Query: 81 EESISKRLGNGFNTFFWSDCWVGT-VSFMERFRRLYDLSIHKDLSVGEMHALGWGEDGEA 139
+ I ++G G FW D VG + M ++ R+Y +S + + ++ +
Sbjct: 944 QNEIVWKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWK 765
Query: 140 WRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQEVH 199
++WRR L E + + ++ + D W+W+ Y+ R Y ++ +
Sbjct: 764 FQWRRPLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQHEAAK 585
Query: 200 -NHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETI 258
N D + W +P K +I A RL+++R PTK+NL RR V N T LC+ E
Sbjct: 584 ANTDPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQLNGT-LCLFCRNYEEEA 408
Query: 259 DHLIIHCLIFGDLWQRIKTWI---GVFSVDPQQVLDHYYQFVYSSGCYNPRR-SFLQLIW 314
HL C +W +WI G FS +P+ H+ Q +S G ++ + + W
Sbjct: 407 SHLFFSCTKTQPVWWESLSWINTSGAFSANPRH---HFLQ--HSFGLLGLKQYNR*KCWW 243
Query: 315 LCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLK 353
+ + + RN+ +F+N +++E+ W +
Sbjct: 242 VALTFTIWQHRNRTIFSNEPFNGSKMMEDAMFLVWSWFR 126
>BE660043
Length = 714
Score = 66.6 bits (161), Expect(2) = 3e-16
Identities = 38/106 (35%), Positives = 53/106 (49%), Gaps = 1/106 (0%)
Frame = -2
Query: 161 LTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLM-RQEVHNHDVVSDAPWHKSVPLKVSI 219
+++ LQ D W+W+P Y+ R Y +L E N D + W +P K SI
Sbjct: 659 ISHTALQQHAADSWVWKPESNGYYSSRNAYILLQGNSEEGNMDDIFKDLWKLKIPAKASI 480
Query: 220 CAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHC 265
A RL+R+R PTK N+ +R + ND+ LC K ET HL C
Sbjct: 479 FAGRLIRDRLPTKSNMRKRQIDINDS-LCPFCSIKEETASHLFFDC 345
Score = 36.2 bits (82), Expect(2) = 3e-16
Identities = 22/96 (22%), Positives = 38/96 (38%), Gaps = 1/96 (1%)
Frame = -1
Query: 272 WQRIKTWIGVFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGI-WVLSNERNQRLF 330
W +WIG P H+ Q +++G ++ W + W + RN+ +F
Sbjct: 327 WWESLSWIGTSGAYPINPRLHFLQ--HNNGMKGGKKYNRWKCWWVALNWSIWQHRNKIIF 154
Query: 331 TNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
TN LLE+ + KW + F ++ W
Sbjct: 153 TNAPFNGSNLLEDALFLAWKWFRTMEKNFTMHFNYW 46
>CO986021
Length = 900
Score = 81.6 bits (200), Expect = 5e-16
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 5/232 (2%)
Frame = -1
Query: 140 WRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLM-RQEV 198
++WRR L E E + + ++ +++ D LW+ + Y+ + Y++L+
Sbjct: 879 FKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLLLPNNRP 700
Query: 199 HNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETI 258
H W +P + + +WRL R+R + NL+RR V D +C E
Sbjct: 699 GQHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHVALQDI-MCPLCGNHQEEA 523
Query: 259 DHLIIHCLIFGDLWQRIKTW---IGVFSVDPQQVLDHYYQFVYSSGCY-NPRRSFLQLIW 314
HL HC + LW W +G F DP H+ QF G N R L W
Sbjct: 522 GHLFFHCRMTIGLWWESMNWTRTLGAFLDDPAA---HFIQFSDGFGAQRNHNRRCLW--W 358
Query: 315 LCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
+ + RN LF T +++++ + WLKA F ++ W
Sbjct: 357 IALTSTIWQHRNSLLFKGTPFQPPKVMDDALFHAWTWLKATEKGFNIPFNQW 202
>TC222789
Length = 954
Score = 75.5 bits (184), Expect = 4e-14
Identities = 51/189 (26%), Positives = 79/189 (40%), Gaps = 4/189 (2%)
Frame = +2
Query: 182 DGYTVRGVYQMLMRQEVHN--HDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRG 239
+G+ R Y LMR D + W VP+K + AWRLLR+R PTK NL RR
Sbjct: 278 NGFCTRVNYAYLMRGAGVEGIKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQ 457
Query: 240 VITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHYYQ--FV 297
+ D + C E HL HC +W +W+ + P+ H+ Q +
Sbjct: 458 IQVMD-RSCPFCRNVEEDAGHLFFHCSKIIPIWWESLSWVNISGALPKDPRQHFLQHDLI 634
Query: 298 YSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNV 357
+ G R + + WL W + +RN+ +F N + +L++ WL
Sbjct: 635 MAGGI---RTTRWKCWWLAVTWTIWQQRNKIIFFNDSFDANKLIDEAAFLLWTWLSNLEK 805
Query: 358 CFPFGYHMW 366
F ++ W
Sbjct: 806 DFSVNFNQW 832
>CA851073
Length = 633
Score = 75.1 bits (183), Expect = 5e-14
Identities = 50/213 (23%), Positives = 92/213 (42%), Gaps = 10/213 (4%)
Frame = +1
Query: 164 VTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQEVHNHDV-VSDAPWHKSVPLKVSICAW 222
+ +Q D +W+ + Y+ + Y++LM H + + W +P + ++ +W
Sbjct: 4 IQIQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSW 183
Query: 223 RLLRNRWPTKDNLVRRGVITNDTQLCVRGCG-KNETIDHLIIHCLIFGDLWQRIKTW--- 278
RL+++R PT+ NL+RR V + + + CG + E DHL +C + LW W
Sbjct: 184 RLIKDRLPTRHNLLRRNVSIQENECPL--CGYEQEEADHLFFNCKMTRGLWWESMRWNQI 357
Query: 279 IGVFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWV-----LSNERNQRLFTNT 333
+G SV P H+ QF G + CG W+ + RN +F
Sbjct: 358 VGPLSVSP---ASHFVQFCDGFGAGRNHTRW------CGWWIALTSSIWKHRNLLIFQGN 510
Query: 334 ARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
+++++ + WLK + F ++ W
Sbjct: 511 QFEPSKVMDDALFLAWSWLKVREKNFNTPFNHW 609
>TC222857
Length = 657
Score = 73.9 bits (180), Expect = 1e-13
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Frame = -3
Query: 201 HDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGK-NETID 259
HD D W +P K + AWRLL +R PTK NL R V +D L C + ET
Sbjct: 631 HDCFKDL-WKIKIPSKFLMFAWRLLWDRLPTKANLRARQVQISD--LTCPFCRRVEETAS 461
Query: 260 HLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHYYQF--VYSSGCYNPRRSFLQLIWLCG 317
H+ IHC+ +W WI + P + DH+ QF + +G + R Q W+
Sbjct: 460 HMFIHCIKTQPIWWETMNWINMQGPLPWSITDHFMQFSSLKEAGIRSRR---WQWWWMAV 290
Query: 318 IWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
W + RN +F+N +L+E+ WL F ++ W
Sbjct: 289 TWSIWQLRNSIVFSNATFDGNKLVEDASFLLWTWLHNLEKDFSLHFNQW 143
>TC233956
Length = 757
Score = 73.9 bits (180), Expect = 1e-13
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 3/206 (1%)
Frame = +2
Query: 164 VTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQ-EVHNHDVVSDAPWHKSVPLKVSICAW 222
+ L + D W+W+ + + YQ++ + + + W VP K W
Sbjct: 35 IRLNNNFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKKLWEIKVPPKALSFVW 214
Query: 223 RLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVF 282
RLL +R PTKDNL++R + D LC ++ET HL C LW +W+
Sbjct: 215 RLLWDRLPTKDNLIKRQIQVED-DLCPFCHSQSETASHLFFTCGKIMPLWWEFLSWVKED 391
Query: 283 SVDPQQVLDHYYQFVYS--SGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQL 340
V + +D++ Q S S N RR+ + IW L RN +F N +L
Sbjct: 392 KVFHCRPMDNFLQHYSSAASKVSNTRRTMWWIAVTNSIWRL---RNDIIFQNQTVDITRL 562
Query: 341 LENVKITSLKWLKAKNVCFPFGYHMW 366
++ WL+ F Y+ W
Sbjct: 563 TDSTLFLLWTWLRGWERNFQIPYYCW 640
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 73.6 bits (179), Expect = 1e-13
Identities = 41/114 (35%), Positives = 60/114 (51%), Gaps = 3/114 (2%)
Frame = +2
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREG--GVTG 58
+ K GGLG++ L+ FN LLGKW W ++ W KVL S+YG R L EG G
Sbjct: 125 LPKAKGGLGIKDLRTFNTTLLGKWRWDLFYIQQEPWAKVLQSKYGGWRA-LEEGSSGSKD 301
Query: 59 SAWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGT-VSFMERF 111
SAWW++++K Q ++ + ++G G FW D W T +S ++F
Sbjct: 302 SAWWKDLIKTQQ---LQRNIPLKRETIWKVGGGDRIKFWEDLWTNTDLSLRDKF 454
>TC231904 similar to GB|AAL25568.1|16648753|AY058152 AT5g16150/T21H19_70
{Arabidopsis thaliana;} , partial (17%)
Length = 903
Score = 72.4 bits (176), Expect = 3e-13
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Frame = +1
Query: 218 SICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKT 277
+I AWRL+R+R PTK NL RR + +D+ LC K+ET HL C LW ++
Sbjct: 271 TIVAWRLIRDRLPTKSNLRRRQIDISDS-LCPFCSIKDETASHLFFECSKIQHLWWESQS 447
Query: 278 WIGVFSVDPQQVLDHYYQF-VYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTART 336
WIG P H+ Q + G +R + W+ W + +RN+ +F N
Sbjct: 448 WIGTSGAYPINPRHHFLQHNIGMKGGKIYKR--WKCWWVALNWSIWQQRNKVIFMNAPFN 621
Query: 337 TVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
+LLE+ + W +A F ++ W
Sbjct: 622 GSKLLEDALFVAWTWFRAMEENFTIHFNFW 711
>BG239687
Length = 443
Score = 70.5 bits (171), Expect = 1e-12
Identities = 37/110 (33%), Positives = 55/110 (49%), Gaps = 5/110 (4%)
Frame = -3
Query: 140 WR----WRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMR 195
WR W R L WE ELV + L V ++ + D W+W+ N GY VR Y +++
Sbjct: 336 WR*KTNWGRNLFEWERELVAKFLEELHLVEVK*NEEDSWVWKSNESGGYNVRDAYMLILH 157
Query: 196 QE-VHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITND 244
V H + W S+P V+ +W LL++R TK+NL +R + D
Sbjct: 156 DGLVDEHANILKQVWKASIPSNVAAFSWSLLQDRIQTKENLSKRRIELTD 7
>CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigrum
granulovirus}, partial (5%)
Length = 701
Score = 70.1 bits (170), Expect = 2e-12
Identities = 51/205 (24%), Positives = 82/205 (39%)
Frame = -1
Query: 162 TNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICA 221
TN +PD +QPN G ++ L W +P A
Sbjct: 695 TNSAYNCIRPDQLFYQPNSG--------FRQL---------------WEIKIPPTALSFA 585
Query: 222 WRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGV 281
WRLL +R P+K+NL+RR ++ + LC + E+ HL C LW TW+
Sbjct: 584 WRLLWDRLPSKENLIRRQIVLQN-DLCPFCQSQVESASHLFFTCHKVMPLWWEFNTWVRE 408
Query: 282 FSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLL 341
V + +D++ Q +G N R ++ W+ + N RN +F N +L+
Sbjct: 407 DRVLHSKPMDNFLQHCSLAGSRNSNRR-RKIWWIAATRSIWNLRNDMIFNNQPFDISKLV 231
Query: 342 ENVKITSLKWLKAKNVCFPFGYHMW 366
+ + WL+ F +H W
Sbjct: 230 DKAIFLTWSWLRGWEKDFNVPFHQW 156
>TC233056
Length = 680
Score = 68.2 bits (165), Expect = 6e-12
Identities = 46/167 (27%), Positives = 76/167 (44%)
Frame = -1
Query: 200 NHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETID 259
N D+V W +P K ++ AWRL+R+R PTK NL RR V+ D+ LC K E
Sbjct: 677 NSDIVE--LWKLKIPAKSAVFAWRLIRDRLPTKTNLRRRQVMLTDS-LCPFCRNKEEEAT 507
Query: 260 HLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIW 319
HL + LW + + + + PQ DHY Q + + + + W+
Sbjct: 506 HLFFNYSNILPLWWESLS*VNLTTALPQNPRDHYLQHGIGND-HGKKAIRWKCWWIALTR 330
Query: 320 VLSNERNQRLFTNTARTTVQLLENVKITSLKWLKAKNVCFPFGYHMW 366
+ RN+ +F N + +LL++ + W+K+ F ++ W
Sbjct: 329 TIWQHRNKIVFQNASFDGSKLLDDAVLLIWTWVKSMEKDFAVHFNQW 189
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.141 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,452,022
Number of Sequences: 63676
Number of extensions: 408013
Number of successful extensions: 3703
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 3553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of query: 377
length of database: 12,639,632
effective HSP length: 99
effective length of query: 278
effective length of database: 6,335,708
effective search space: 1761326824
effective search space used: 1761326824
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC127021.2