BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.10 + phase: 0 /pseudo/partial
(264 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF920770 108 2e-24
NP004897 gag-protease polyprotein 103 6e-23
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 99 1e-21
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 99 1e-21
TC223814 60 1e-09
TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n... 36 0.020
TC219413 similar to UP|Q97LA8 (Q97LA8) Sensory transduction hist... 33 0.13
TC210317 similar to UP|Q9ZQ85 (Q9ZQ85) Expressed protein (At2g03... 33 0.13
BE805076 weakly similar to GP|9294121|dbj copia-like retrotransp... 32 0.38
TC229948 similar to UP|Q9MAC6 (Q9MAC6) T4P13.15 protein, partial... 31 0.50
TC208936 similar to UP|Q85708 (Q85708) Env gene product (321 AA)... 30 1.1
TC221531 similar to UP|Q84N48 (Q84N48) CRS2-associated factor 2,... 30 1.1
TC229493 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prot... 30 1.4
AW760462 29 1.9
AI736704 29 2.5
TC212810 similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), pa... 29 2.5
TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6... 28 3.2
TC224077 similar to UP|Q8IH01 (Q8IH01) LD40727p (Fragment), part... 28 5.5
TC208928 similar to GB|AAC72109.1|3850569|F15K9 ESTs gb|T21276, ... 28 5.5
TC209602 similar to UP|Q940G9 (Q940G9) Periaxin-like protein, pa... 27 7.2
>CF920770
Length = 581
Score = 108 bits (270), Expect = 2e-24
Identities = 62/187 (33%), Positives = 103/187 (54%), Gaps = 12/187 (6%)
Frame = -2
Query: 37 DEELWDILEDG------VDDLDLDEEGAAIDRRIHTPAQK------KLYKKHHKIRGIIV 84
D +W+ +E G V+ + +D ++ I P + K + + K + II
Sbjct: 574 DLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIIT 395
Query: 85 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 144
+++ EY ++S+ +AK M+ +L EG+ VK ++ L H+YELFRM +E+I+ M
Sbjct: 394 SALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSM 215
Query: 145 YSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 204
RF +V+ L L K + D ++K+LR L W+PKVTAI E++DL+ +S+ L L
Sbjct: 214 QKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKL 35
Query: 205 KVHEMSL 211
+ HEM L
Sbjct: 34 QEHEMEL 14
>NP004897 gag-protease polyprotein
Length = 1923
Score = 103 bits (258), Expect = 6e-23
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 5/242 (2%)
Frame = +1
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 72
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
L V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 253 DE 254
DE
Sbjct: 730 DE 735
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 99.4 bits (246), Expect = 1e-21
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 5/242 (2%)
Frame = +1
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 49 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 253 DE 254
DE
Sbjct: 730 DE 735
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 99.4 bits (246), Expect = 1e-21
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 5/242 (2%)
Frame = +1
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 253 DE 254
DE
Sbjct: 730 DE 735
>TC223814
Length = 607
Score = 60.1 bits (144), Expect = 1e-09
Identities = 41/101 (40%), Positives = 60/101 (58%), Gaps = 1/101 (0%)
Frame = +1
Query: 146 SRFQTLVSGLQILKKS-YVVSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 204
S+ Q +++ L+ L K+ DH++KIL+SL + RP V A+ ++KDL +L VE+ +L
Sbjct: 223 SKVQNIMNNLRSLSKT*DNHDDHITKILQSLLIQ*RP*VIALCDSKDLKSLPVEEFDGTL 402
Query: 205 KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEE 245
+VHE+ L E E +K K IA SK KA K S S E
Sbjct: 403 QVHELELMEDEGQRKGKFIA-------SKVQKALKRSLSRE 504
>TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
partial (20%)
Length = 925
Score = 35.8 bits (81), Expect = 0.020
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 210 SLNEHETSKKSKSIALPSKGKTSK----SSKAYK----ASESEEESPDGDSDEDQSCKDG 261
S +E E K + +A+P K +++K S+ A K AS S ES D DSDED++ K
Sbjct: 193 SSSESEDEKPAAKVAVPPKNQSAKNGTLSTPAEKGKPAASSSSSESSDDDSDEDEAPKSK 372
Query: 262 YA 263
A
Sbjct: 373 VA 378
Score = 31.6 bits (70), Expect = 0.38
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Frame = +1
Query: 208 EMSLNEHETSKKSKSIALPSKGKT-SKSSKAYKASESEEESPDGDSDEDQSCK 259
E S ++ + + KS P+ GK S+K + SES E D SDED++ K
Sbjct: 325 ESSDDDSDEDEAPKSKVAPAAGKNVPASTKITQPSESSESDSDSSSDEDKNKK 483
>TC219413 similar to UP|Q97LA8 (Q97LA8) Sensory transduction histidine
kinase, partial (4%)
Length = 953
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Frame = +1
Query: 164 VSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSL----NEHETSKK 219
++ +S + SL SR + +++ N + ++ +S+ V E S N+HE+ KK
Sbjct: 10 MTQKLSTRMPSLESRMK----VLKDIASENGIVLQLEETSVSVEEQSSVEKQNQHESEKK 177
Query: 220 SKSIA-LPSKGKTSKSSKAYKASESEEESPD 249
++++ LP++GK K + +YK + ++ D
Sbjct: 178 EENVSMLPNRGKDEKLTDSYKGRKKYKDVAD 270
>TC210317 similar to UP|Q9ZQ85 (Q9ZQ85) Expressed protein (At2g03500/T4M8.7),
partial (11%)
Length = 871
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/79 (26%), Positives = 31/79 (38%)
Frame = +1
Query: 182 KVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKAS 241
K+ A + L+ L + D +S LK S +P K + S
Sbjct: 238 KIHAFKRELPLSMLLLNDAISVLKAESQKCRVARDSAPVLEEFIPLKKERGDQS------ 399
Query: 242 ESEEESPDGDSDEDQSCKD 260
E EEE + D D+D C+D
Sbjct: 400 EEEEEEEENDDDDDNECRD 456
>BE805076 weakly similar to GP|9294121|dbj copia-like retrotransposable
element {Arabidopsis thaliana}, partial (2%)
Length = 388
Score = 31.6 bits (70), Expect = 0.38
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = +1
Query: 4 DKKTDSG--KAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDG 47
D T S P FNG E + +W+ M +++ D LWDI+E+G
Sbjct: 100 DNTTQSSAISVPIFNG--ENYDFWRVKMETYLSSQD--LWDIVEEG 225
>TC229948 similar to UP|Q9MAC6 (Q9MAC6) T4P13.15 protein, partial (16%)
Length = 1798
Score = 31.2 bits (69), Expect = 0.50
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 20/214 (9%)
Frame = +1
Query: 45 EDGVDDLDLDEEGAAIDRRIHTPAQKKLYK---------KHHKIRGIIVASIPRTEYMKM 95
+D DD D + A D I PA KK K +H +I G+ AS E +
Sbjct: 412 DDDSDDTDQEATEEADDFFIEEPAAKKRKKPQNKEDEEQRHEEIDGLDKASKEELELLLA 591
Query: 96 SDKSTAKAMFASLCANFEGSKK------VKEAKALMLVHQYELFR--MKDDESIEEMYSR 147
DK T + +G K + E K + F + +I+ +
Sbjct: 592 DDKGTDTGVKGYNLKFKKGKGKKRRENDIDEEKIPSNAYNDPRFSALFSPNYAIDPTDPQ 771
Query: 148 FQTLVS-GLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLS--VEDLVSSL 204
F+ + Q+ +K D+ + P++ + + E++ + ++ L S
Sbjct: 772 FKRSATYARQLAQKQQ--KDNADPPVEREPTKLKGTQLSSEDSGRMKDEEEGLDALKSKK 945
Query: 205 KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAY 238
+E+S KSK + LPS KT K K+Y
Sbjct: 946 DKYELSSLVKSIKMKSKQVQLPSDNKTRKDGKSY 1047
>TC208936 similar to UP|Q85708 (Q85708) Env gene product (321 AA) (Fragment),
partial (6%)
Length = 1040
Score = 30.0 bits (66), Expect = 1.1
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +1
Query: 131 ELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAK 190
E + DD + S T+ GL K S +I ++ S P+V ++ +
Sbjct: 457 EAVSLDDDSAKCSSASAGTTIDLGLN--KSSQSGQSGAEEIKQTASSSSDPQVLSLTQNI 630
Query: 191 DLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSS-KAYKASESEEE 246
++ +EDL L + + + E ETS S I+ +T SS + K ESE E
Sbjct: 631 NILESKLEDLQGVLALRDSRIAELETSSSSVKISREESARTVDSSDEKCKVVESELE 801
>TC221531 similar to UP|Q84N48 (Q84N48) CRS2-associated factor 2, partial
(5%)
Length = 922
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 227 SKGKTSKSSKAYKASESEEESPDGDSDEDQSCKD 260
+K + S SS A + E EEE D D DED+ D
Sbjct: 598 AKFEDSYSSDALQTEEEEEEEEDEDEDEDEDYYD 699
>TC229493 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (92%)
Length = 1103
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +2
Query: 208 EMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQ-------SCKD 260
E S + +S KSKS SKG+ S+S K K ++ EEE + D+++ +C +
Sbjct: 605 EKSSISNHSSNKSKS---GSKGRGSESGKYSKETKDEEEEVLDEEDDEEHEETLCGACGE 775
Query: 261 GYA 263
YA
Sbjct: 776 HYA 784
>AW760462
Length = 408
Score = 29.3 bits (64), Expect = 1.9
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Frame = -2
Query: 98 KSTAKAMFAS--LCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGL 155
K+ + +FAS C + KKV A++ + S E Y + QT+ S
Sbjct: 347 KARSNILFASQCFCKAYHAQKKVLGIVAMICDFVNSI-------SKE*KYGKRQTMGSSF 189
Query: 156 QILKKSYVVSDHVSKILRSLPSRWR-PKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEH 214
Q K + D+ ++PS+ + P TA+ ++ D N S
Sbjct: 188 QCFGKKRLTDDNNVADRATIPSKKK*PVNTALTKSLDRNLKS------------------ 63
Query: 215 ETSKKSKSIALPSKGK 230
K +IALP+KGK
Sbjct: 62 --KKSDNNIALPTKGK 21
>AI736704
Length = 423
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/67 (25%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Frame = +3
Query: 196 SVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEE-SPDGDSDE 254
S+ D+ L+ +EHE +KKS+S + +GK K + ++ +++ +P+ DS +
Sbjct: 141 SIADVTLELRRVAEKKSEHEAAKKSES-SFEEEGKLEKETAENGGNDGDDDAAPEYDSPD 317
Query: 255 DQSCKDG 261
+ G
Sbjct: 318 SEITDSG 338
>TC212810 similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial (11%)
Length = 407
Score = 28.9 bits (63), Expect = 2.5
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 180 RPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYK 239
RP+VTA++ ++DL S S + E S+ K+ AL S + SS++ +
Sbjct: 392 RPRVTALQTSRDLTPRSRR---SGRSLSSGGFVIWEGSRPIKTTALNSASQQRNSSRSLR 222
Query: 240 ASESEEE-SPDGDSDEDQSCKD 260
+ E SP+ + +E++ +
Sbjct: 221 SHAMERSASPEEEVEEEEESSE 156
>TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6, partial
(26%)
Length = 894
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/89 (26%), Positives = 33/89 (36%), Gaps = 14/89 (15%)
Frame = +1
Query: 181 PKVTAIEEAKDLNTLSVEDLVSSLKV--------------HEMSLNEHETSKKSKSIALP 226
P+ + +K + L ++DL S + HE +E E +K K I
Sbjct: 160 PQEPTLPSSKRKSDLDLQDLPSKIPKLDLKENDDKDLQNDHEGENDEREEDRKGKGIMRD 339
Query: 227 SKGKTSKSSKAYKASESEEESPDGDSDED 255
KGK K EEE D D D D
Sbjct: 340 DKGKG-------KMILEEEEDDDDDDDSD 405
>TC224077 similar to UP|Q8IH01 (Q8IH01) LD40727p (Fragment), partial (3%)
Length = 574
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 214 HETSKKSKSIALPSKGKTSKSSKAYKASESEEES 247
HE + S+ S K+S+SSKA AS SE E+
Sbjct: 2 HEACMLAPSLGASSFNKSSRSSKAKAASGSEAEA 103
>TC208928 similar to GB|AAC72109.1|3850569|F15K9 ESTs gb|T21276, gb|T45403,
and gb|AA586113 come from this gene. {Arabidopsis
thaliana;} , partial (9%)
Length = 872
Score = 27.7 bits (60), Expect = 5.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 195 LSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDE 254
L +ED S+ E+ + + S+ S +P +S K E E D+D
Sbjct: 110 LEIEDDGKSVSAPELKTDVDDKSENVSS-NVPENVSSSGDKLDVKCEEKEASKGKTDNDN 286
Query: 255 DQSCKD 260
+ SCKD
Sbjct: 287 NGSCKD 304
>TC209602 similar to UP|Q940G9 (Q940G9) Periaxin-like protein, partial (20%)
Length = 744
Score = 27.3 bits (59), Expect = 7.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 175 LPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMS----LNEHETSKKSKSIALPSKGK 230
LP PKV I + +L+ + + K+HE+S L+ E SK S+ +P K
Sbjct: 116 LPKLELPKVAEISKILELSKPELPKIPKLPKIHELSKVPELSNPELSKVSELPKVPELPK 295
Query: 231 TSKSSK 236
+ SK
Sbjct: 296 VPELSK 313
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,601,799
Number of Sequences: 63676
Number of extensions: 105313
Number of successful extensions: 577
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of query: 264
length of database: 12,639,632
effective HSP length: 96
effective length of query: 168
effective length of database: 6,526,736
effective search space: 1096491648
effective search space used: 1096491648
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC127021.10