TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127020.7 + phase: 0 /pseudo
         (1459 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro...    35  0.24
AW757181                                                               34  0.41
BM731380                                                               32  1.6
BM891241                                                               32  2.7
TC218770 UP|Q9XIU5 (Q9XIU5) GmMYB29B2 protein, complete                32  2.7
BG551381                                                               31  3.5
CD486734 homologue to GP|16419191|gb| glucosamine-6-phosphate de...    31  4.6
TC225216 homologue to UP|Q6PW04 (Q6PW04) Membrane-anchored endo-...    30  6.0
TC221243 similar to UP|DNLI_ARATH (Q42572) DNA ligase  (Polydeox...    30  6.0
TC219141                                                               30  7.8
TC228007 similar to UP|Q9LT13 (Q9LT13) Gb|AAF01580.1, partial (51%)    30  7.8

>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
           partial (8%)
          Length = 581

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 20/73 (27%), Positives = 41/73 (55%), Gaps = 7/73 (9%)
 Frame = -2

Query: 484 FVFCLFMIVIFL*TAPGEAGVLLYFGVIL*IVILLIFQEITLLLGLLIVLR-------VL 536
           F+F LF+I+IF+        ++    +++ I+IL++    T  +GL I++R       + 
Sbjct: 517 FIFILFVIIIFI-------SIIFIVIIVVVIIILIVVIAFTSTIGLGIIIRISFFPAIIT 359

Query: 537 *DLLVIMIILIAV 549
            ++L+I II++ V
Sbjct: 358 REILIIFIIIVTV 320


>AW757181 
          Length = 422

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 32/136 (23%), Positives = 51/136 (36%)
 Frame = +3

Query: 79  YLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFV 138
           YL QF  +      +  G  +  + +I++ R  P+ + N   +  +  WVQ   LP    
Sbjct: 15  YLVQFTSEEGYKNAMFNGS*MVADHYIIV*RWKPTFIQNAKKM*KVAEWVQFLLLPMKLY 194

Query: 139 QPKVGQGIGSFLGTLKAYDVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
                    S LGT+   D   +IHS        ++V   L K   V      +     +
Sbjct: 195 HDVFL*TTWSLLGTILNID*CTSIHSKARFSPTCVEVV--LNKTKLVSKFEARWNVYFVE 368

Query: 199 YEKLGVFCHRCGVLGH 214
              L + C +CG  GH
Sbjct: 369 *NGLHLICFQCGTYGH 416


>BM731380 
          Length = 433

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 18/41 (43%), Positives = 30/41 (72%)
 Frame = +2

Query: 504 VLLYFGVIL*IVILLIFQEITLLLGLLIVLRVL*DLLVIMI 544
           VLL   ++L +V+LL+ Q + LLL  L++L+VL  LLV+++
Sbjct: 293 VLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVLLL 415


>BM891241 
          Length = 407

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 19/37 (51%), Positives = 21/37 (56%)
 Frame = -3

Query: 1277 G*TGKSYPHQRYMEVWVSKISPLLI*LC*VNRVGS*L 1313
            G* G+ +   R   VW SKISP  I*LC  N  G *L
Sbjct: 375  G*NGRLFACPRLRGVWGSKISPNSI*LCWANGYGP*L 265


>TC218770 UP|Q9XIU5 (Q9XIU5) GmMYB29B2 protein, complete
          Length = 1316

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
 Frame = -1

Query: 643 FRIFPLLMLKLWW-------LRLLITTQFTSILLL---------HLGPMLLSVIFAMKMR 686
           F +  LL L L W        +L+  T F S+ +L         HL P +   +  +   
Sbjct: 509 FGLVALLELGLDWSDFSSLFFKLVCQTFFISLSVLPGNLAAIADHLFPNISCSLMIVSSS 330

Query: 687 GILNRASRISLLILGRNILLIRSFRSFPHVRKTCLYGR 724
            I+    +  LLI G   L+ RS + FPH+R+   +GR
Sbjct: 329 SIV----KFPLLISGLK*LIQRSLQLFPHLRRPACFGR 228


>BG551381 
          Length = 230

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/65 (24%), Positives = 27/65 (40%)
 Frame = -3

Query: 223 FELDSDDGVRNWGPYLKPVTQRVGTAATNRWLQDPIPAVTPSHNSDVAAASVGRKTQTAG 282
           F   SD+   NW P  K    ++   ++  WL+  +P  + SH S   +  +  +    G
Sbjct: 222 FRTFSDNPSTNWTPLFKSTMSKLQPLSSGCWLRSSLPPFSVSHISSPISLLLRAQLHCHG 43

Query: 283 TGVVT 287
            G  T
Sbjct: 42  GGTAT 28


>CD486734 homologue to GP|16419191|gb| glucosamine-6-phosphate deaminase
           {Salmonella typhimurium LT2}, partial (20%)
          Length = 366

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 LLPSSSTGTSASNLLPDRPIVLGLP 354
           LL  S T ++ SN  PDRP VLGLP
Sbjct: 234 LLVISLTASTRSNQQPDRPFVLGLP 308


>TC225216 homologue to UP|Q6PW04 (Q6PW04) Membrane-anchored
           endo-1,4-beta-glucanase  , complete
          Length = 2204

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
 Frame = +3

Query: 648 LLMLKLWWLRLLITTQFTSILLLHLGPML------LSVIFAMKMRGILN--RASRISLLI 699
           LL L++WW+  ++    +S+  L   P+L      LS++  M++ G LN  R S   +LI
Sbjct: 444 LLRLRIWWVGTMMPGMLSSLTFLLRFPLLC*VGV*LSIVQNMRLLGSLNMLRRSLSGVLI 623

Query: 700 LGRNILLI 707
           +   + ++
Sbjct: 624 IFSRVSIV 647


>TC221243 similar to UP|DNLI_ARATH (Q42572) DNA ligase
           (Polydeoxyribonucleotide synthase [ATP]) , partial (22%)
          Length = 847

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +3

Query: 655 WLRLLITTQFTSILLLHLGPMLLSVIFAMKMRGILNRASRISLLILGRNILLIRSFRSFP 714
           W  LL++T   ++    +   LL++   MK   +  R  R SL +  +N+LL+   + FP
Sbjct: 99  WYLLLLSTVVGNVQEFMVPSSLLAMTMIMKNFKVFAR*ERDSLKLCLKNVLLVFVLK*FP 278

Query: 715 HVRKT 719
           + R T
Sbjct: 279 NQRHT 293


>TC219141 
          Length = 703

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 11/95 (11%)
 Frame = +3

Query: 525 LLLGLLIVLRVL*D--LLVIMIILIAVVKMPRGIFYDNFHLNLQGLGA---------FLA 573
           L+LG+L VL    +   L + I LIA +         N   +L G+GA         FL 
Sbjct: 186 LVLGVLTVLFPTEEGPTLQVAISLIATIYFIHERLKSNIRASLYGVGAFGISWLLGTFLM 365

Query: 574 ILMTSSIQVRKGGTPLDLLGLLTAFVKLFLTLVYL 608
           + +   I + KG    +++  L  +V L+++  YL
Sbjct: 366 VSVIPPITILKGPRAFEVISSLITYVLLWVSSTYL 470


>TC228007 similar to UP|Q9LT13 (Q9LT13) Gb|AAF01580.1, partial (51%)
          Length = 1707

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 17/58 (29%), Positives = 28/58 (47%)
 Frame = +2

Query: 228 DDGVRNWGPYLKPVTQRVGTAATNRWLQDPIPAVTPSHNSDVAAASVGRKTQTAGTGV 285
           DD   ++ PYL PV +   ++ +    +DP+PA+     S    A  GR+ Q  G  +
Sbjct: 674 DDPSSSYSPYLPPVLEEPSSSFSEAADEDPLPAIEGLQIS--GEAFPGRELQACGYSI 841


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.351    0.158    0.526 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,366,892
Number of Sequences: 63676
Number of extensions: 995231
Number of successful extensions: 8510
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6273
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 2030
Number of HSP's gapped (non-prelim): 6843
length of query: 1459
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1350
effective length of database: 5,698,948
effective search space: 7693579800
effective search space used: 7693579800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 65 (29.6 bits)