BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127019.10 + phase: 0
(113 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225749 homologue to UP|Q8CGN9 (Q8CGN9) Histone protein Hist2h3... 136 2e-33
TC215237 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC218355 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC214469 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC214488 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC225748 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC217752 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC225747 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC214482 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC215233 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC205707 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 136 2e-33
TC225752 UP|H3_PEA (P02300) Histone H3, partial (98%) 131 4e-32
BE190464 PIR|A27501|HS histone H3.3 [validated] - human, complete 130 1e-31
TC214467 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 129 2e-31
TC214466 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 129 2e-31
TC214464 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 129 2e-31
TC214471 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 129 2e-31
TC214463 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 129 2e-31
TC214470 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 129 2e-31
TC214577 similar to UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, ... 110 1e-25
>TC225749 homologue to UP|Q8CGN9 (Q8CGN9) Histone protein Hist2h3c1, partial
(77%)
Length = 686
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 418
>TC215237 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 686
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 50 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 229
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 230 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 397
>TC218355 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 652
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 77 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 256
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 257 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 424
>TC214469 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 642
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 77 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 256
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 257 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 424
>TC214488 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 692
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 65 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 244
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 245 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 412
>TC225748 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 914
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +3
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 84 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 263
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 264 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 431
>TC217752 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 710
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +3
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 63 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 242
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 243 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 410
>TC225747 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 1486
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 253
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 254 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 421
>TC214482 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 724
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 418
>TC215233 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 707
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +3
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 66 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 245
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 246 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 413
>TC205707 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 708
Score = 136 bits (342), Expect = 2e-33
Identities = 78/116 (67%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST
Sbjct: 76 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 255
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 256 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 423
>TC225752 UP|H3_PEA (P02300) Histone H3, partial (98%)
Length = 631
Score = 131 bits (330), Expect = 4e-32
Identities = 75/112 (66%), Positives = 81/112 (71%), Gaps = 3/112 (2%)
Frame = +1
Query: 5 KQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS--NK 61
KQTAR +TGGKAPRKQLATKAARKSA A G VKKPH F GTVALREIR YQ+ST +
Sbjct: 172 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIR 351
Query: 62 EASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
+ FKT LRFQSSAVSA+QE EA V LFEDTN+CAIHAK
Sbjct: 352 KLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAK 507
>BE190464 PIR|A27501|HS histone H3.3 [validated] - human, complete
Length = 435
Score = 130 bits (326), Expect = 1e-31
Identities = 73/116 (62%), Positives = 83/116 (70%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA + G VKKPH + GTVALREIR YQ+ST
Sbjct: 28 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 207
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS+A+ A+QE EA V LFEDTN+CAIHAK
Sbjct: 208 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAK 375
>TC214467 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 835
Score = 129 bits (324), Expect = 2e-31
Identities = 74/116 (63%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + GTVALREIR YQ+ST
Sbjct: 47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 226
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS AV A+QE EA V LFEDTN+CAIHAK
Sbjct: 227 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK 394
>TC214466 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 666
Score = 129 bits (324), Expect = 2e-31
Identities = 74/116 (63%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Frame = +3
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + GTVALREIR YQ+ST
Sbjct: 57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 236
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS AV A+QE EA V LFEDTN+CAIHAK
Sbjct: 237 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK 404
>TC214464 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 805
Score = 129 bits (324), Expect = 2e-31
Identities = 74/116 (63%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + GTVALREIR YQ+ST
Sbjct: 52 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 231
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS AV A+QE EA V LFEDTN+CAIHAK
Sbjct: 232 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK 399
>TC214471 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 993
Score = 129 bits (324), Expect = 2e-31
Identities = 74/116 (63%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Frame = +3
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + GTVALREIR YQ+ST
Sbjct: 96 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 275
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS AV A+QE EA V LFEDTN+CAIHAK
Sbjct: 276 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK 443
>TC214463 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 814
Score = 129 bits (324), Expect = 2e-31
Identities = 74/116 (63%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + GTVALREIR YQ+ST
Sbjct: 101 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 280
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS AV A+QE EA V LFEDTN+CAIHAK
Sbjct: 281 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK 448
>TC214470 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 708
Score = 129 bits (324), Expect = 2e-31
Identities = 74/116 (63%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + GTVALREIR YQ+ST
Sbjct: 76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 255
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LRFQS AV A+QE EA V LFEDTN+CAIHAK
Sbjct: 256 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK 423
>TC214577 similar to UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 892
Score = 110 bits (275), Expect = 1e-25
Identities = 66/116 (56%), Positives = 76/116 (64%), Gaps = 3/116 (2%)
Frame = +2
Query: 1 MAGTKQTAR-NTGGKAPRKQLATKAARKSALAAGTVKKPHHFCHGTVALREIRNYQRSTS 59
MA TKQTAR +TGGKAPRKQLATKAARKSA G VKKPH + T ALRE R YQR+T
Sbjct: 485 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPETEALRERRRYQRTTE 664
Query: 60 --NKEASVSETCEGNCSGFKTGLRFQSSAVSAVQEVVEACFVSLFEDTNICAIHAK 113
++ FKT LR QS AV A+QE EA V L +DTN+CA++AK
Sbjct: 665 LLIRKLPFQRLVREIAHDFKTDLRCQSRAVLALQEAAEAYLVGLCDDTNLCAVNAK 832
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.125 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,229,640
Number of Sequences: 63676
Number of extensions: 65532
Number of successful extensions: 444
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of query: 113
length of database: 12,639,632
effective HSP length: 89
effective length of query: 24
effective length of database: 6,972,468
effective search space: 167339232
effective search space used: 167339232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC127019.10