BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126794.7 - phase: 1 /pseudo
(830 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204478 similar to UP|ARFB_ARATH (Q94JM3) Auxin response factor... 829 0.0
TC204476 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-lik... 746 0.0
TC204475 similar to GB|AAG53999.1|12484201|AF336918 ARF2 {Arabid... 446 e-129
TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mt... 362 e-102
TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin respon... 276 3e-74
TC233029 homologue to GB|AAN46837.1|24111405|BT001072 At5g62000/... 230 3e-73
TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin respons... 212 5e-55
BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Ara... 209 5e-54
BU577928 similar to GP|10176918|db auxin response factor-like pr... 202 5e-52
BM891533 similar to GP|10176918|db auxin response factor-like pr... 189 6e-48
BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Ar... 186 5e-47
AW278931 similar to GP|23893346|emb auxin response factor 1 {Ory... 150 2e-36
BI787310 similar to GP|10176918|dbj auxin response factor-like p... 149 4e-36
BI469301 homologue to GP|19352043|db auxin response factor 6b {O... 105 3e-35
AI443940 homologue to GP|19352043|db auxin response factor 6b {O... 141 1e-33
TC224267 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, ... 120 6e-31
BF008668 weakly similar to GP|23893346|emb auxin response factor... 122 5e-28
TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ... 119 4e-27
BU763867 similar to GP|10176918|dbj auxin response factor-like p... 112 9e-25
AI856586 105 1e-22
>TC204478 similar to UP|ARFB_ARATH (Q94JM3) Auxin response factor 2
(ARF1-binding protein) (ARF1-BP), partial (37%)
Length = 1975
Score = 829 bits (2141), Expect = 0.0
Identities = 431/601 (71%), Positives = 463/601 (76%), Gaps = 73/601 (12%)
Frame = +3
Query: 303 GNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYT 362
GNVPSSVISSHSMHLGVLATAWHA+LTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYT
Sbjct: 3 GNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYT 182
Query: 363 IGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSP 422
IGMRFKMRFEGEEAPEQRFTGTIVGIED+D+KRWP SKWR LKVRWDETSNIPRPERVS
Sbjct: 183 IGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQ 362
Query: 423 WKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPTSGFQRVLQ 482
WKIEPALAPPALNPLPMPRPKRPR+NVVPSSPDSSVLTREASSKVS+DPLPTSGFQRVLQ
Sbjct: 363 WKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPTSGFQRVLQ 542
Query: 483 GQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGSENWMPMSRQEPTYS 542
GQE STLRGN AESN+S TAEKS W PATD+EK+D VSTSRRYGS++WM M R EPTY
Sbjct: 543 GQELSTLRGNFAESNESDTAEKSAVWPPATDDEKID-VSTSRRYGSDSWMSMGRHEPTYP 719
Query: 543 DLLSGFGS--------------------------TREGKHNMLTQWPVMPPGLSLNFLHS 576
DLLSGFG+ REGKHN+L+ WP +P LSLN L S
Sbjct: 720 DLLSGFGAHGDHSSHPSFVDQNGPVANLSRKHLLDREGKHNVLSPWPGVPSSLSLNLLDS 899
Query: 577 NMKGSAQGSDNATYQAQGNMRY-SAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSR 635
N+KGSAQG D A YQ +GN+RY SAFG+Y VLHGHKVE+ H +FLMPPPP TQYESP SR
Sbjct: 900 NLKGSAQGGDTA-YQVRGNLRYSSAFGEYPVLHGHKVEHSHRSFLMPPPPSTQYESPRSR 1076
Query: 636 ELSQKQMSAKISEAAKPKDSDCKLFGFSLLSS-PTMLEPSLSQRNATSETSSHMQISSQH 694
EL K +S K E +K KDSDCKLFG SLLSS P EPSLSQRN TSE+ HM +S H
Sbjct: 1077ELLSKPISGKPCEVSKLKDSDCKLFGISLLSSRPIASEPSLSQRNVTSESVGHMHTASHH 1256
Query: 695 -HTFENDQKSEHSKSSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKK 753
ENDQKSEHS+ SKPAD L ++D+HEK LQTSQPH+KDVQ K SGSARSCTKVHKK
Sbjct: 1257QRAIENDQKSEHSRGSKPADGL-LIDDHEKVLQTSQPHLKDVQAKSHSGSARSCTKVHKK 1433
Query: 754 GIALGRSVDLTKFSDYDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW- 812
GIALGRSVDLTKFSDY EL ELDQLFEF GEL SPQKDWL+V+TDNEGDMMLVGDDPW
Sbjct: 1434GIALGRSVDLTKFSDYGELITELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQ 1613
Query: 813 -------------------------------------------HLPQRRDSENEPGYTEF 829
+LPQR DSENEPGY EF
Sbjct: 1614*GYLTMTSLIIL*W*KKKS*Q*QFVCIILFLNQGICCNGSQNLYLPQRGDSENEPGYLEF 1793
Query: 830 K 830
K
Sbjct: 1794K 1796
>TC204476 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-like protein,
partial (43%)
Length = 2243
Score = 746 bits (1925), Expect(2) = 0.0
Identities = 378/522 (72%), Positives = 419/522 (79%), Gaps = 27/522 (5%)
Frame = +3
Query: 318 GVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAP 377
GVLATAWHA+LTGT+FTVYYKPRTSPAEFIVPYDQYMESLKNNY+IGMRFKMRFEGEEAP
Sbjct: 3 GVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAP 182
Query: 378 EQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPL 437
EQRFTGT+VGIEDSD KRW SKWRCLKVRWDETSN PRPERVSPWKIEPALAPPALNPL
Sbjct: 183 EQRFTGTVVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPL 362
Query: 438 PMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPTSGFQRVLQGQESSTLRGNLAESN 497
MPRPKRPR+N VPSSPDSSVLTREASSKVS+DP P +GF RVLQGQE STLRGN ESN
Sbjct: 363 SMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNFTESN 542
Query: 498 DSYTAEKSVAWTP-ATDEEKMDAVSTSRRYGSENWMPMSRQEPTYSDLLSGFGST----- 551
+ TAEKSV W P A D+EKMD VSTSR+YGSE+WM M R EPTYSDLLSGFG++
Sbjct: 543 EFDTAEKSVVWPPTAVDDEKMD-VSTSRKYGSESWMSMGRNEPTYSDLLSGFGTSGDPSH 719
Query: 552 -------------------REGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNATYQA 592
EGK +M WPVMP LSLN L SN KG G D ++QA
Sbjct: 720 SSLKDQMSPAYSARKQSLDHEGKLHMPHPWPVMPSSLSLNILDSNAKGPTHGGD-TSFQA 896
Query: 593 QGNMRYSAFGDYSVLHGHKVENPHGNFLMPPP-PPTQYESPHSRELSQKQMSAKISEAAK 651
+GN+R+SAFG+Y LHGHKVE+ HGN + PPP P TQY+SP SREL K +SAK EA K
Sbjct: 897 RGNLRFSAFGEYPALHGHKVEDSHGNLMPPPPAPQTQYQSPCSRELMSKHVSAKTCEAVK 1076
Query: 652 PKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISS-QHHTFENDQKSEHSKSSK 710
PKD DCKLFGFSL+S P + EPSLSQRN SE + M +++ Q T END+KS+HSK S+
Sbjct: 1077PKDGDCKLFGFSLISGPIVPEPSLSQRN-VSEPAGQMHLTAHQQRTSENDEKSDHSKGSR 1253
Query: 711 PADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYD 770
P D LV VD+H++ LQTSQ H KDVQ KP SGSARSCTKVHKKGIALGRSVDLTK+S YD
Sbjct: 1254PVDDLV-VDDHDRPLQTSQSHTKDVQAKPLSGSARSCTKVHKKGIALGRSVDLTKYSGYD 1430
Query: 771 ELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 812
EL AELDQLFEF GEL+S +KDWL+V+TDNEGDMMLVGDDPW
Sbjct: 1431ELVAELDQLFEFGGELLSTKKDWLIVYTDNEGDMMLVGDDPW 1556
Score = 26.2 bits (56), Expect(2) = 0.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 813 HLPQRRDSENEPGYTEFK 830
+LP R D ENEP YTE +
Sbjct: 1589 YLP*RGDPENEPRYTELE 1642
>TC204475 similar to GB|AAG53999.1|12484201|AF336918 ARF2 {Arabidopsis
thaliana;} , partial (39%)
Length = 1686
Score = 446 bits (1147), Expect(2) = e-129
Identities = 237/362 (65%), Positives = 264/362 (72%), Gaps = 29/362 (8%)
Frame = +1
Query: 480 VLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGSENWMPMSRQEP 539
VLQGQE STLRG AESN+S T EKS W P D+EK+D VSTSRRYGS++WM M R E
Sbjct: 1 VLQGQELSTLRGKFAESNESDTVEKSAVWPPVADDEKID-VSTSRRYGSDSWMSMGRHEL 177
Query: 540 TYSDLLSGFGS--------------------------TREGKHNMLTQWPVMPPGLSLNF 573
TY DLLSGFG+ EGKHN+L+ W +P LSLN
Sbjct: 178 TYPDLLSGFGTHGDHSSHPSFVDQNGPVANVGRKHLLDCEGKHNVLSPWSGVPSSLSLNL 357
Query: 574 LHSNMKGSAQGSDNATYQAQGNMRY-SAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESP 632
L SN KGSAQG D TYQ +GN+RY SAFG+Y +LHGHKVE+ HGNFLMPPPP T YESP
Sbjct: 358 LDSNTKGSAQGGD-TTYQVRGNLRYSSAFGEYPMLHGHKVEHSHGNFLMPPPPSTPYESP 534
Query: 633 HSRELSQKQMSAKISEAAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISS 692
SREL K +S K E +KPKDSDCKLFG SLLSSP EPS+SQRN SE HM +S
Sbjct: 535 RSRELLPKPISGKPCEVSKPKDSDCKLFGISLLSSPIAPEPSVSQRNVPSEPVGHMHTTS 714
Query: 693 -QHHTFENDQKSEHSK-SSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKV 750
Q F+NDQKSEHS+ SKPAD L ++D+HEK LQTSQ H+KD+Q K SGSARSCTKV
Sbjct: 715 HQQRAFDNDQKSEHSRGGSKPADGL-LIDDHEKVLQTSQTHLKDIQAKSHSGSARSCTKV 891
Query: 751 HKKGIALGRSVDLTKFSDYDELTAELDQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDD 810
HKKGIALGRSVDLTKFSDY EL AELDQLFEF G L SPQKDWL+V+TDNEGDMMLVGDD
Sbjct: 892 HKKGIALGRSVDLTKFSDYGELIAELDQLFEFGGLLTSPQKDWLIVYTDNEGDMMLVGDD 1071
Query: 811 PW 812
PW
Sbjct: 1072PW 1077
Score = 37.0 bits (84), Expect(2) = e-129
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +3
Query: 808 GDDPWHLPQRRDSENEPGYTEFK 830
G +LPQR DSENEPGY EFK
Sbjct: 1095 GSQNLYLPQRGDSENEPGYLEFK 1163
>TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mtg10_20
{Arabidopsis thaliana;} , partial (31%)
Length = 878
Score = 362 bits (928), Expect(2) = e-102
Identities = 174/203 (85%), Positives = 182/203 (88%)
Frame = +1
Query: 81 EAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKI 140
+AEAALYRELWHACAGPLVTVPRE E VFYFPQGHIEQVEASTNQ +EQHMPVYDL PKI
Sbjct: 256 DAEAALYRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKI 435
Query: 141 LCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASD 200
LCRVINVMLKAEPDTDEVFAQVTL+PEPNQDENAVEKE PPA PPRFHVHSFCKTLTASD
Sbjct: 436 LCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHSFCKTLTASD 615
Query: 201 TSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRH 260
TSTHGGFSVLRRHADECLPPLDM+KQPPTQELVAKDLHGN WRFRHIFR GQPR+H
Sbjct: 616 TSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR-----GQPRKH 780
Query: 261 LLQSGWSVFVSSKRLVAGDAFIF 283
LLQSGW+VFV+ + G F
Sbjct: 781 LLQSGWNVFVTPXSXLLGMRLXF 849
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3
Query: 269 FVSSKRLVAGDAFIFLRGENGEL 291
F S +L AGDAF FLRGE EL
Sbjct: 804 FCYSXKLXAGDAFXFLRGEKXEL 872
Score = 30.8 bits (68), Expect(2) = e-102
Identities = 21/48 (43%), Positives = 28/48 (57%), Gaps = 7/48 (14%)
Frame = +3
Query: 10 KKHGIIRSIYEGKFCQRKR*KQR*WCWRC-------SKWFFIVINRKR 50
KK+G + I +GKF +RKR R* W C S+ FFI+I R+R
Sbjct: 123 KKNGDVGGIDQGKFGKRKR---R*QFW*C*KQWRRGSECFFIIIIRER 257
>TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin response factor 1
{Arabidopsis thaliana;} , partial (54%)
Length = 1772
Score = 276 bits (706), Expect = 3e-74
Identities = 149/275 (54%), Positives = 193/275 (70%), Gaps = 8/275 (2%)
Frame = +3
Query: 255 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHS 314
GQP+RHLL +GWSVFVSSK+L AGDAFIFLRGENGELRVGVRR MRQQ NVPSSVISSHS
Sbjct: 165 GQPKRHLLTTGWSVFVSSKKLAAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISSHS 344
Query: 315 MHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGE 374
MHLGVLATA HA+ TGT+F+V+YKPRTS +EFIV ++Y+E + ++GMRFKMRFEG+
Sbjct: 345 MHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVQSHKLSVGMRFKMRFEGD 524
Query: 375 EAPEQRFTGTIVGIEDSDSKR-WPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPA 433
E PE+RF+GTIVG+ D+ S WP S+WR LKV+WDE S+I RP+RVS W++EP ++
Sbjct: 525 EIPERRFSGTIVGVGDNKSSSVWPDSEWRSLKVQWDEPSSIMRPDRVSSWELEPLVSTTL 704
Query: 434 LNPLPMPRPKRPRANVVPSS-PDSSV-----LTREASSKVSMDPLPTSGFQRVLQGQESS 487
N R KR R ++PS+ PDSS+ + E++S DP G + S+
Sbjct: 705 ANSQTTQRNKRARPLILPSTMPDSSLQGIWKSSVESTSFSYCDPQQGRGLYPSPKFNSSA 884
Query: 488 T-LRGNLAESNDSYTAEKSVAWTPATDEEKMDAVS 521
T G S+ + KS+ W+ E ++++S
Sbjct: 885 TNFIGFSGNSSVGSPSNKSIYWSNRM-ENNLESIS 986
Score = 106 bits (265), Expect = 4e-23
Identities = 61/156 (39%), Positives = 86/156 (55%)
Frame = +3
Query: 657 CKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISSQHHTFENDQKSEHSKSSKPADKLV 716
C+LFG LL + E +L + + S E+DQ SE S +++ V
Sbjct: 1038 CRLFGIQLLENSNA-EGNLQTVTLSGRVGDDRSVPSLDA--ESDQHSEPSNANRSDIPSV 1208
Query: 717 IVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAEL 776
D + LQ+ Q + QS RSCTKVH +G+A+GR+VDLT+F Y++L +L
Sbjct: 1209 SCDAEKSCLQSPQ--------ESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKL 1364
Query: 777 DQLFEFRGELISPQKDWLVVFTDNEGDMMLVGDDPW 812
+ +F + EL K W VV+TDNE DMM+VGDDPW
Sbjct: 1365 EDMFNIKTELCGSLKKWQVVYTDNEDDMMMVGDDPW 1472
>TC233029 homologue to GB|AAN46837.1|24111405|BT001072 At5g62000/mtg10_20
{Arabidopsis thaliana;} , partial (23%)
Length = 1004
Score = 230 bits (586), Expect(2) = 3e-73
Identities = 130/210 (61%), Positives = 134/210 (62%), Gaps = 72/210 (34%)
Frame = +1
Query: 249 RGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR----------------------- 285
R ELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR
Sbjct: 220 RVELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRLVG*LMDRVLDFTGFFLCFFLVF 399
Query: 286 ------------GENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMF 333
GENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+LTGTMF
Sbjct: 400 YLVAPTNLETFRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMF 579
Query: 334 TVYYKP-------------------------------------RTSPAEFIVPYDQYMES 356
TVYYKP RTSPAEFIVPYDQYMES
Sbjct: 580 TVYYKPRFVPCSCT*MNDLRVSF*LNPCGRIYSCTGMLPNLFYRTSPAEFIVPYDQYMES 759
Query: 357 LKNNYTIGMRFKMRFEGEEAPEQRFTGTIV 386
LKNNYTIGMRFKMRFEGEEAPEQR+ ++
Sbjct: 760 LKNNYTIGMRFKMRFEGEEAPEQRYECVVI 849
Score = 64.7 bits (156), Expect(2) = 3e-73
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +3
Query: 222 DMSKQPPTQELVAKDLHGNEWRFRHIFRG 250
DMSKQPPTQELVAKDLH NEWRFRHIFRG
Sbjct: 45 DMSKQPPTQELVAKDLHANEWRFRHIFRG 131
>TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin response
transcription factor 3 {Arabidopsis thaliana;} , partial
(32%)
Length = 687
Score = 212 bits (540), Expect = 5e-55
Identities = 110/206 (53%), Positives = 136/206 (65%), Gaps = 14/206 (6%)
Frame = +3
Query: 89 ELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVM 148
ELWHACAGP++++P++G +V YFPQGH+EQ + ++P + + CRV++V
Sbjct: 123 ELWHACAGPMISLPKKGSVVVYFPQGHLEQHLHDFPLPASANIPSH-----VFCRVLDVK 287
Query: 149 LKAEPDTDEVFAQVTLVPEPNQ--------------DENAVEKEAPPAPPPRFHVHSFCK 194
L AE +DEV+ QV LVPE Q D AV K P H FCK
Sbjct: 288 LHAEEGSDEVYCQVVLVPESEQKLREGEFDADGEEEDAEAVMKSTTP--------HMFCK 443
Query: 195 TLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELIS 254
TLTASDTSTHGGFSV RR A++C PPLD S+Q P+QELVAKDLHG EWRFRHI+R
Sbjct: 444 TLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYR----- 608
Query: 255 GQPRRHLLQSGWSVFVSSKRLVAGDA 280
GQPRRHLL +GWS FV+ K+LV+GDA
Sbjct: 609 GQPRRHLLTTGWSAFVNKKKLVSGDA 686
>BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Arabidopsis
thaliana, partial (21%)
Length = 440
Score = 209 bits (531), Expect = 5e-54
Identities = 108/151 (71%), Positives = 117/151 (76%)
Frame = +1
Query: 162 VTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPL 221
+TLVPE NQ E + PA PR VHSFCK LTASDTSTHGGFSVLR+HA ECLP L
Sbjct: 1 ITLVPESNQTE-PTSPDPCPAELPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPAL 177
Query: 222 DMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAF 281
DMSK PTQELVAKDL G EWRF+HIFR GQPRRHLL +GWS FV+SKRLVAGD F
Sbjct: 178 DMSKSTPTQELVAKDLQGFEWRFKHIFR-----GQPRRHLLTTGWSTFVTSKRLVAGDTF 342
Query: 282 IFLRGENGELRVGVRRAMRQQGNVPSSVISS 312
+FLRG NGELRVGVRR Q ++PSSVISS
Sbjct: 343 VFLRGNNGELRVGVRRIAPLQSSMPSSVISS 435
>BU577928 similar to GP|10176918|db auxin response factor-like protein
{Arabidopsis thaliana}, partial (13%)
Length = 362
Score = 202 bits (514), Expect = 5e-52
Identities = 98/120 (81%), Positives = 104/120 (86%)
Frame = +1
Query: 371 FEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALA 430
FEGEEAPEQRFTGT+VGIEDSD KRW SKWRCLKVRWDETSN PRPERVSPWKIEPAL
Sbjct: 1 FEGEEAPEQRFTGTVVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALV 180
Query: 431 PPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPTSGFQRVLQGQESSTLR 490
+LNPL MPRPKRPRAN VPS PDSSVLTREAS KVS++P P +G +VLQGQE STLR
Sbjct: 181 FFSLNPLSMPRPKRPRANAVPSCPDSSVLTREASCKVSINPSPANGCAKVLQGQEFSTLR 360
>BM891533 similar to GP|10176918|db auxin response factor-like protein
{Arabidopsis thaliana}, partial (11%)
Length = 306
Score = 189 bits (479), Expect = 6e-48
Identities = 90/101 (89%), Positives = 93/101 (91%)
Frame = +3
Query: 108 VFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPE 167
VFYFPQGHIEQVEASTNQ ++QHMPVYDL PKILCRVINV LKAEPDTDEVFAQVTL+PE
Sbjct: 3 VFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPE 182
Query: 168 PNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFS 208
PNQ AVEKE PP PPPRFHVHSFCKTLTASDTSTHGGFS
Sbjct: 183 PNQYFFAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFS 305
>BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Arabidopsis
thaliana}, partial (15%)
Length = 433
Score = 186 bits (471), Expect = 5e-47
Identities = 88/141 (62%), Positives = 107/141 (75%)
Frame = +3
Query: 176 EKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAK 235
++E P + H FCKTLTASDTSTHGGFSV RR A++C PPLD KQ P+QELVAK
Sbjct: 24 DEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKKQRPSQELVAK 203
Query: 236 DLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGV 295
DLHG EW+FRHI+R GQPRRHLL +GWS+FVS K LV+GDA +FLRGENGELR+G+
Sbjct: 204 DLHGVEWKFRHIYR-----GQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGI 368
Query: 296 RRAMRQQGNVPSSVISSHSMH 316
RRA R + +P S++ S S +
Sbjct: 369 RRAARPRNGLPESIVGSQSYY 431
>AW278931 similar to GP|23893346|emb auxin response factor 1 {Oryza sativa
(japonica cultivar-group)}, partial (3%)
Length = 403
Score = 150 bits (380), Expect = 2e-36
Identities = 80/135 (59%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
Frame = +2
Query: 649 AAKPKDSDCKLFGFSLLSSPTMLEPSLSQRNATSETSSHMQISS-QHHTFENDQKSEHSK 707
A KPKD D +LFGFSL+S PT+ EPSLSQRN SE + M +++ Q T END+K +HSK
Sbjct: 2 AVKPKDGD*ELFGFSLISGPTLPEPSLSQRNV-SEAADQMHLTAHQQRTSENDEKLDHSK 178
Query: 708 SSKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFS 767
S+P D + D+ ++ L+TSQ H KDVQ KP SGSA CT++HKKGIAL RSVDLTK+
Sbjct: 179 GSRPVDDIG-GDDQDRPLRTSQLHTKDVQAKPLSGSAHDCTRIHKKGIALDRSVDLTKYR 355
Query: 768 DYDELTAELDQLFEF 782
YDE AELDQL E+
Sbjct: 356 GYDE*DAELDQLAEY 400
>BI787310 similar to GP|10176918|dbj auxin response factor-like protein
{Arabidopsis thaliana}, partial (8%)
Length = 421
Score = 149 bits (377), Expect = 4e-36
Identities = 78/96 (81%), Positives = 86/96 (89%)
Frame = +2
Query: 442 PKRPRANVVPSSPDSSVLTREASSKVSMDPLPTSGFQRVLQGQESSTLRGNLAESNDSYT 501
PKRPR+NVVPSSPDSSVLTREAS KVS+DPLPTSGFQRVLQGQE STLRGN AESN+S T
Sbjct: 2 PKRPRSNVVPSSPDSSVLTREAS-KVSVDPLPTSGFQRVLQGQELSTLRGNFAESNESDT 178
Query: 502 AEKSVAWTPATDEEKMDAVSTSRRYGSENWMPMSRQ 537
AEKS W PATD+EK+D VSTSRRYGS++WM M R+
Sbjct: 179 AEKSGVWPPATDDEKID-VSTSRRYGSDSWMSMVRK 283
Score = 37.0 bits (84), Expect = 0.036
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1
Query: 808 GDDPWHLPQRRDSENEPGYTEFK 830
G +LPQR DSENEPGY EFK
Sbjct: 274 GSQNLYLPQRGDSENEPGYLEFK 342
>BI469301 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (15%)
Length = 422
Score = 105 bits (262), Expect(2) = 3e-35
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +3
Query: 184 PPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWR 243
P + + FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL+A+DLH NEW+
Sbjct: 219 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWK 398
Query: 244 FRHIFRGE 251
FRHIFRG+
Sbjct: 399 FRHIFRGQ 422
Score = 62.4 bits (150), Expect(2) = 3e-35
Identities = 29/56 (51%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Frame = +1
Query: 112 PQGHIEQVEASTNQASEQHMPVY-DLRPKILCRVINVMLKAEPDTDEVFAQVTLVP 166
PQGH EQV ASTN+ + H+P Y +L P+++C++ NV + A+ +TDEV+AQ+TL P
Sbjct: 1 PQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQP 168
>AI443940 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (14%)
Length = 391
Score = 141 bits (356), Expect = 1e-33
Identities = 68/128 (53%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Frame = +3
Query: 124 NQASEQHMPVY-DLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPA 182
N+ + H+P Y L P+++C++ N+ + A+ +TDEV+AQ+TL P Q++N A
Sbjct: 3 NKEVDAHIPNYPSLPPQLICQLHNMTMHADVETDEVYAQMTLQPLNPQEQNEAYLPAELG 182
Query: 183 PPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEW 242
+ + FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL+A+DLHGNEW
Sbjct: 183 TASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEW 362
Query: 243 RFRHIFRG 250
+FRHIFRG
Sbjct: 363 KFRHIFRG 386
>TC224267 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, partial
(13%)
Length = 421
Score = 120 bits (300), Expect(2) = 6e-31
Identities = 56/109 (51%), Positives = 77/109 (70%)
Frame = +3
Query: 294 GVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQY 353
G++RA RQQ + SSVISS SMH+G+LA A HA + FT++Y PR SP+EF++P +Y
Sbjct: 6 GIKRANRQQPALFSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKY 185
Query: 354 MESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWR 402
++L N ++GMRF+M FE EE+ +R+ GTI GI D D RW S+WR
Sbjct: 186 NKALFNQVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWR 332
Score = 33.5 bits (75), Expect(2) = 6e-31
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +1
Query: 404 LKVRWDETSNIPRPERVSPWKIEPAL 429
L+V WDE++ RP RVS W IEP +
Sbjct: 337 LQVGWDESTGGERPSRVSIWDIEPVV 414
>BF008668 weakly similar to GP|23893346|emb auxin response factor 1 {Oryza
sativa (japonica cultivar-group)}, partial (10%)
Length = 265
Score = 122 bits (307), Expect = 5e-28
Identities = 62/88 (70%), Positives = 69/88 (77%)
Frame = +2
Query: 282 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRT 341
I R ENGE RVGVRRAM QQG VPSSV SSHSMHLGVLA+ WHA+LTGT+FTV++KP
Sbjct: 2 ILSRRENGEPRVGVRRAM*QQGYVPSSVFSSHSMHLGVLASGWHAILTGTIFTVFFKP*N 181
Query: 342 SPAEFIVPYDQYMESLKNNYTIGMRFKM 369
AEF P DQYM +LKN+Y IG RF M
Sbjct: 182 HSAEFFGPGDQYMGALKNSYCIGTRFIM 265
>TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
partial (26%)
Length = 658
Score = 119 bits (299), Expect = 4e-27
Identities = 77/223 (34%), Positives = 104/223 (46%), Gaps = 44/223 (19%)
Frame = +2
Query: 219 PPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGELISGQPRRHLLQSGWSVFVSSKRLVAG 278
P LD S PP Q ++AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+L AG
Sbjct: 5 PRLDYSVDPPVQNILAKDVHGETWKFRHIYRGT-----PRRHLLTTGWSTFVNHKKLFAG 169
Query: 279 DAFIFLRGENGELRVGVRRAMR-------------------------------------- 300
D+ +FLR ENG+L VG+RRA +
Sbjct: 170 DSIVFLRAENGDLCVGIRRAKKGICGGLETSSGWNPAGGNCHIPYGGFSPFFREDDNRIS 349
Query: 301 ----QQGNVPS-SVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYME 355
G PS S++ + ++ A + F V Y PR S EF V
Sbjct: 350 RNGNSNGLNPSVSMMGKGKVRPEAVSEASNLAANKKPFEVVYYPRASTPEFCVKASLVEA 529
Query: 356 SLKNNYTIGMRFKMRFEGEEAPE-QRFTGTIVGIEDSDSKRWP 397
+L+ + G+RFKM FE E++ F GTI + +D WP
Sbjct: 530 ALQIRWCSGIRFKMAFETEDSSRISWFMGTISSAQVADPLNWP 658
>BU763867 similar to GP|10176918|dbj auxin response factor-like protein
{Arabidopsis thaliana}, partial (8%)
Length = 452
Score = 112 bits (279), Expect = 9e-25
Identities = 56/95 (58%), Positives = 67/95 (69%), Gaps = 2/95 (2%)
Frame = +1
Query: 86 LYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHM--PVYDLRPKILCR 143
LY ELW ACAG V VPR + VFYFPQGH+EQV A T + H+ PVYDL KILC+
Sbjct: 130 LYTELWRACAGSFVYVPRVDDRVFYFPQGHLEQVAAYTQNQPDSHLEIPVYDLPSKILCK 309
Query: 144 VINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKE 178
++NV LKAE +DEV+AQVTLVPE +D E+E
Sbjct: 310 IMNVELKAEAYSDEVYAQVTLVPEVQKDNLCFEEE 414
>AI856586
Length = 321
Score = 105 bits (261), Expect = 1e-22
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +1
Query: 261 LLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL 320
LL +GWSVFVS+KRL AGD+ +F+R E L +G+RRA RQQ + SSVISS SMH+G+L
Sbjct: 4 LLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGIL 183
Query: 321 ATAWHAVLTGTMFTVYYKPRTSPAEFI 347
A A HA + FT++Y PR SP+EF+
Sbjct: 184 AAAAHAAANNSPFTIFYNPRASPSEFV 264
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,257,690
Number of Sequences: 63676
Number of extensions: 672841
Number of successful extensions: 7099
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 5928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6884
length of query: 830
length of database: 12,639,632
effective HSP length: 105
effective length of query: 725
effective length of database: 5,953,652
effective search space: 4316397700
effective search space used: 4316397700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC126794.7