TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126788.1 - phase: 0 /pseudo
         (981 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC234828                                                               57  4e-08
NP595172 polyprotein [Glycine max]                                     48  2e-05
CO982196                                                               31  2.3
TC207394 similar to UP|Q6YY75 (Q6YY75) Serine/threonine-protein ...    30  5.2
TC203600 similar to UP|O64455 (O64455) Ca2+/H+ exchanger, partia...    30  6.8
CO984966                                                               29  8.9

>TC234828 
          Length = 857

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 35/83 (42%), Positives = 43/83 (51%)
 Frame = +1

Query: 1   KTKL*LAGYQW*TSFLKFFRMRFQMYHQKGRLSSPSIWCQERSRCRWHLIVCRHPNLLS* 60
           K  L L  Y+W  +F KFFRM F   H + + +S   WC  R +CR  LI C   N   *
Sbjct: 607 KRTLKLVVYRWCQNFQKFFRMMFVNCHLREKWNSLLTWCLGRIQCRLRLIECLRWN*QR* 786

Query: 61  RNS*RTCSTRSL*DQVFHRGERL 83
           R+  RT    +L  Q  HRGERL
Sbjct: 787 RHKYRTF*ANNLFVQAHHRGERL 855


>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 57/184 (30%), Positives = 85/184 (45%)
 Frame = +2

Query: 85   CW*RRKMVV*GYALTTVS*IKLQ*RIDIRFRELTT*WISWLVQRFLVKLT*GQVTIRSR* 144
            C  RRKM V   A     *++  *RI  + ++     ++++         *GQ TI+   
Sbjct: 1913 CLLRRKMEVGDSAQIIEL*MQSL*RIAFQCQQWMNC*MNYMELNIFQNWI*GQDTIKFWY 2092

Query: 145  KMRTCRRLPLAHDMVITNIR*CLSVLLMRLVCSWSI*TEFFMLTWINLWLYSLMTF*SIR 204
             +R  R+L L H M I N  *C  VLLM    S + *T++F L   NL+L  LMT * I 
Sbjct: 2093 SLRIERKLLLEHIMAIMNG**CHLVLLMHQPHSNA**TKYFSLLSENLFLCFLMTS*YIV 2272

Query: 205  ELRKSMQNI*GLYCKY*KRRSCMPNCQSASFG*VK*VFLAILFLVVVLQWILQKLMQYHN 264
             L + + +   L  + *   S + +C +      K +  A  +L     W +Q+  QY  
Sbjct: 2273 LLGRIISSTWNLCYRP*SNISYLLDCPNVHLEIQKLITWATRYLG*EFPWRIQRYKQY*I 2452

Query: 265  GRLR 268
            G L+
Sbjct: 2453 GLLQ 2464


>CO982196 
          Length = 812

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 30/105 (28%), Positives = 48/105 (45%)
 Frame = +2

Query: 578 CFGGLV*SVMLLNLCMHV*LARSLRLNIRSLQGC*HHWMYRSGNGIVFLWIL*QVYIILR 637
           CFG   *  +L  + +HV     +RL    LQGC ++ +++   G++ LWI  + Y  L+
Sbjct: 455 CFGK-E*RKLLGIMLLHVKSVGEIRLVHYPLQGCYNYCLFQLRCGLISLWISLEAYQKLK 631

Query: 638 EDMILYGLWSID*RSRRTLFR*ISVFRWLSWRRFIFGTL*SCMVF 682
              I    W I * S      *+++ +      +     * CMVF
Sbjct: 632 GRTIY*W*W-IG*LSMLIFLH*VTLIQLRK*LSYSLKNW*DCMVF 763


>TC207394 similar to UP|Q6YY75 (Q6YY75) Serine/threonine-protein kinase
           Nek4-like, partial (12%)
          Length = 902

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 586 VMLLNLCMHV*LARSLRLNIRSLQGC*HH 614
           +ML NLC +  L+ S ++N +SL GC* H
Sbjct: 560 LMLWNLCSNYVLSYSSKINSKSLLGC*DH 646


>TC203600 similar to UP|O64455 (O64455) Ca2+/H+ exchanger, partial (97%)
          Length = 2134

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 867  YLRESGQWLIGWVCPLIFRICMTCSTCRSCGSMYRILRILFLGMTCKL 914
            + R S  W++ W C + +  C+ C     CG  Y    I F+G  C+L
Sbjct: 975  FRRTSCDWIMEWHCLVGWNDCIHCCVV*ICGG-YN*GCIRFMGFVCEL 1115


>CO984966 
          Length = 852

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -2

Query: 171 LMRLVCSWSI*TEFFMLTWINL 192
           ++ L+C+W +*++FF++T  N+
Sbjct: 602 ILSLICTWKV*SQFFLITSFNM 537


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.373    0.166    0.653 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,618,395
Number of Sequences: 63676
Number of extensions: 754390
Number of successful extensions: 10394
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4179
Number of HSP's successfully gapped in prelim test: 364
Number of HSP's that attempted gapping in prelim test: 5971
Number of HSP's gapped (non-prelim): 5026
length of query: 981
length of database: 12,639,632
effective HSP length: 106
effective length of query: 875
effective length of database: 5,889,976
effective search space: 5153729000
effective search space used: 5153729000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 64 (29.3 bits)