BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126786.8 - phase: 0 /pseudo
(688 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217937 similar to GB|AAP68233.1|31711754|BT008794 At4g15680 {A... 354 6e-98
TC217938 225 4e-59
BI427459 102 7e-22
AI496469 72 6e-13
TC229608 similar to UP|Q7XA86 (Q7XA86) At3g51390, partial (43%) 66 6e-11
TC207777 weakly similar to UP|Q9VKB1 (Q9VKB1) CG6618-PA (GH15747... 59 5e-09
TC219018 weakly similar to UP|ZDH3_MOUSE (Q8R173) Zinc finger DH... 57 2e-08
TC211944 homologue to UP|Q93VV0 (Q93VV0) AT3g09320/F3L24_19, par... 55 1e-07
TC233750 similar to UP|Q9FYD4 (Q9FYD4) Rec-like protein, partial... 53 4e-07
TC212052 52 9e-07
BM091767 similar to GP|2252856|gb| A_TM018A10.8 gene product {Ar... 51 2e-06
TC205576 weakly similar to UP|Q17401 (Q17401) C. elegans PQN-2 p... 50 3e-06
TC223711 50 3e-06
TC205575 weakly similar to UP|ZDH3_MOUSE (Q8R173) Zinc finger DH... 49 6e-06
TC230131 weakly similar to UP|Q06551 (Q06551) Ylr246wp, partial ... 49 6e-06
TC220652 weakly similar to UP|Q93VV0 (Q93VV0) AT3g09320/F3L24_19... 36 2e-05
TC210916 31 2.1
AW306923 31 2.1
TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment... 30 2.7
BG839937 30 4.6
>TC217937 similar to GB|AAP68233.1|31711754|BT008794 At4g15680 {Arabidopsis
thaliana;} , partial (14%)
Length = 906
Score = 354 bits (909), Expect = 6e-98
Identities = 208/301 (69%), Positives = 226/301 (74%), Gaps = 1/301 (0%)
Frame = +2
Query: 341 QLMRVSSRVYLHLLLVHLSLQ*AEEALLE*VCKSKVPGVHLQESLWINRMKLYIIWSLAA 400
QLM V+SRVY LLLV LSLQ* EEA LE*V +KVPGVH Q SLW RMKLY IWS A
Sbjct: 2 QLMGVNSRVYHRLLLVQLSLQ*VEEAPLE*VYSTKVPGVHRQGSLWTTRMKLYHIWSRDA 181
Query: 401 YHLLWIQMQYNHLTRGKN*TSALCE*AHGNLQN*IPMKQLRH*LKLEHRRLCFVQLVLDL 460
YH L IQM YNHLT+G+ *TSALC * HGNLQN I M+QLR L+ EH RLCFVQLVLDL
Sbjct: 182 YHPLLIQMPYNHLTKGEK*TSALCV*VHGNLQNWILMRQLRQLLRPEHHRLCFVQLVLDL 361
Query: 461 MHMMSIIYQVAI*VEEAALLVTEDFITNMIKQGHQGYLLPRVHTLPVKQAGKI*M-RATT 519
M MM I+Y VA+*VEEAA +DFI MI+ GHQGYLLPR HTL VKQA K *M T
Sbjct: 362 MRMMLIMYPVAM*VEEAAQSAIKDFI*KMIQWGHQGYLLPRAHTLLVKQARKT*MLHVNT 541
Query: 520 V*VT*AVHKCPTYLLRQCRGQV*TETISTPCISNHL*ISLLHQLEEVKGV*IQFMKMVHV 579
V*VT AVHK PT LL QCRGQV*TETISTPCI+NH ISLL Q++E+KG *IQF M HV
Sbjct: 542 V*VTLAVHKSPTLLLHQCRGQV*TETISTPCINNHREISLLRQVKELKGT*IQFTTMWHV 721
Query: 580 WQ*GITA*LF*RIEGRQCFGIKQLVALSRTHLELKAVLRFLEQS*HTAAVLYFLAVLL*V 639
Q* T *+F IE R CFGIK+L ALS H E+ AVLRF EQS T AVLYFLA L*+
Sbjct: 722 HQ*EATP*VFQIIEDRLCFGIKKLDALSHPHQEVPAVLRFPEQSYCTRAVLYFLAAPL*M 901
Query: 640 N 640
N
Sbjct: 902 N 904
>TC217938
Length = 957
Score = 225 bits (574), Expect = 4e-59
Identities = 144/217 (66%), Positives = 157/217 (71%), Gaps = 5/217 (2%)
Frame = +2
Query: 477 AALLVTEDFITNMIKQGHQGYLLPRVHTLPVKQAGKI*MR-ATTV*VT*AVHKCPTYLLR 535
AA +DFI MI+ GHQGYLLPR TL VKQA *M A TV*VT AVH+ PT LL
Sbjct: 2 AAQSAIKDFI*KMIQWGHQGYLLPRARTLLVKQARMT*MHHANTV*VTLAVHESPTLLLH 181
Query: 536 QCRGQV*TETISTPCISNHL*ISLLHQLEEVKGV*IQFMKMVHVWQ*GITA*LF*RIEGR 595
QCRGQV*TETISTPCI+NH SLL QL+EVKG *IQF M HV+Q* T *LF IE R
Sbjct: 182 QCRGQV*TETISTPCINNHRETSLLRQLKEVKGT*IQFTTMCHVYQ*EATP*LFQIIEDR 361
Query: 596 QCFGIKQLVALSRTHLELKAVLRFLEQS*HTAAVLYFLAVLL*VNSQMQEQEIVAQ-*LV 654
QCFGIKQL ALSR H E+ EQ+ T AVLYFLA L*+NSQ+QEQE+ Q *LV
Sbjct: 362 QCFGIKQLDALSRPHQEVP------EQNYCTRAVLYFLAAPL*MNSQVQEQEVAVQ**LV 523
Query: 655 FRTEIIL-*GIFSKVDHIEVPSFLCSFPVI--PSKTS 688
FR EI+L *GIFSKVDHI V SFLC F V+ PSKTS
Sbjct: 524 FRIEILLH*GIFSKVDHIGVASFLCLFLVVVMPSKTS 634
>BI427459
Length = 426
Score = 102 bits (253), Expect = 7e-22
Identities = 52/94 (55%), Positives = 66/94 (69%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 MGRRHGWELPFHTFQVVAITVFFLLCIAYYAFFAPFL-GKDIFEFVAFGVYSLLALSVFF 59
M R+HGW+LP HTFQVVAITVF LL IA+YAF APF+ G I+E+ +YS +AL VF
Sbjct: 133 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFLAPFIGGGHIWEYTFIAIYSPVALIVFI 312
Query: 60 LYVRCTAIDPADLGVMIDCDKTSKNRSKLDEELA 93
LYVRCTAI+PAD G++ D N+ +L+
Sbjct: 313 LYVRCTAINPADPGIISKFDPRVGNKFSSAHDLS 414
>AI496469
Length = 163
Score = 72.4 bits (176), Expect = 6e-13
Identities = 33/52 (63%), Positives = 38/52 (72%)
Frame = +2
Query: 126 AREDCRSDEDFILQQQSGEEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHH 177
+ EDCR +++ +Q G EDAL CTLC A VRKFS HCRSCD CVD FDHH
Sbjct: 11 SHEDCR-EQEATADEQGGGEDALVCTLCIAXVRKFSXHCRSCD*CVDCFDHH 163
>TC229608 similar to UP|Q7XA86 (Q7XA86) At3g51390, partial (43%)
Length = 975
Score = 65.9 bits (159), Expect = 6e-11
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +2
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISF 193
CT CN E +KHC CDKCV FDHHC WL NC+G+ N+ F
Sbjct: 53 CTYCNMEQPPRAKHCHDCDKCVLQFDHHCVWLGNCIGQGNHCKF 184
>TC207777 weakly similar to UP|Q9VKB1 (Q9VKB1) CG6618-PA (GH15747p), partial
(13%)
Length = 980
Score = 59.3 bits (142), Expect = 5e-09
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSL 201
C C +KHC +CD CV+ FDHHC W++NC+G+KN F + + +
Sbjct: 171 CATCKIVRPLRAKHCSTCDHCVEQFDHHCPWVSNCIGKKNKRDFFVFLVLEV 326
>TC219018 weakly similar to UP|ZDH3_MOUSE (Q8R173) Zinc finger DHHC domain
containing protein 3 (Golgi-specific DHHC zinc finger
protein), partial (12%)
Length = 1730
Score = 57.4 bits (137), Expect = 2e-08
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKN---YISFVCL 196
C C SKHC +C +CV+ DHHC W++NCVG++N + F+CL
Sbjct: 1142 CPTCKIIRPVRSKHCPTCKRCVEQLDHHCPWISNCVGKRNKRDFFIFICL 1291
>TC211944 homologue to UP|Q93VV0 (Q93VV0) AT3g09320/F3L24_19, partial (26%)
Length = 382
Score = 55.1 bits (131), Expect = 1e-07
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +3
Query: 146 DALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNY 190
D +C C+ + HCR C +CV DHHC W+NNCVG NY
Sbjct: 240 DLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANY 374
>TC233750 similar to UP|Q9FYD4 (Q9FYD4) Rec-like protein, partial (39%)
Length = 415
Score = 53.1 bits (126), Expect = 4e-07
Identities = 21/44 (47%), Positives = 26/44 (58%)
Frame = +2
Query: 150 CTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISF 193
C C A + HCR C +C+ DHHC W+NNCVG NY +F
Sbjct: 272 CDKCFAYKPPRTHHCRVCRRCILKMDHHCLWINNCVGYWNYKAF 403
>TC212052
Length = 627
Score = 52.0 bits (123), Expect = 9e-07
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 9/59 (15%)
Frame = +1
Query: 163 HCRSCDKCVDGFDHHCRWLNNCVGRKNYISF---------VCLMAVSLVWVSCMKMPIS 212
HC C+ CV+ FDHHC W+ C+G +NY F +C+ + WV +++ S
Sbjct: 34 HCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVFAFCWVYIVRIMAS 210
>BM091767 similar to GP|2252856|gb| A_TM018A10.8 gene product {Arabidopsis
thaliana}, partial (45%)
Length = 406
Score = 50.8 bits (120), Expect = 2e-06
Identities = 25/76 (32%), Positives = 37/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 149 FCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSLV--WVSC 206
+C+ C HC C +CV DHHC W+ NCVG +NY F+ + + + + C
Sbjct: 37 YCSRCQNGKPPRCHHCSICQRCVLKMDHHCIWVVNCVGARNYKYFLLFLLYTFLETVLDC 216
Query: 207 MKMPISLS*I*LSLSP 222
+ + S * SL P
Sbjct: 217 LALVPSFISS*FSLRP 264
>TC205576 weakly similar to UP|Q17401 (Q17401) C. elegans PQN-2 protein
(Corresponding sequence AC3.4), partial (9%)
Length = 1097
Score = 50.1 bits (118), Expect = 3e-06
Identities = 21/65 (32%), Positives = 30/65 (45%)
Frame = +3
Query: 138 LQQQSGEEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLM 197
LQ + +C C+ HC C +CV DHHC W+ NCVG NY F+ +
Sbjct: 84 LQSDPANQRFRYCRKCSQPKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFL 263
Query: 198 AVSLV 202
+ +
Sbjct: 264 VYTFL 278
>TC223711
Length = 507
Score = 50.1 bits (118), Expect = 3e-06
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = +2
Query: 161 SKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVS 200
+ HC C+ CV FDHHC W+ C+G +NY F ++ S
Sbjct: 26 TSHCSICNNCVQRFDHHCPWVGQCIGIRNYRYFFMFISTS 145
>TC205575 weakly similar to UP|ZDH3_MOUSE (Q8R173) Zinc finger DHHC domain
containing protein 3 (Golgi-specific DHHC zinc finger
protein), partial (16%)
Length = 1563
Score = 49.3 bits (116), Expect = 6e-06
Identities = 20/49 (40%), Positives = 25/49 (50%)
Frame = +1
Query: 149 FCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLM 197
+C CN HC C +CV DHHC W+ NCVG NY F+ +
Sbjct: 682 YCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFL 828
>TC230131 weakly similar to UP|Q06551 (Q06551) Ylr246wp, partial (9%)
Length = 1115
Score = 49.3 bits (116), Expect = 6e-06
Identities = 21/57 (36%), Positives = 30/57 (51%)
Frame = +3
Query: 149 FCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYISFVCLMAVSLVWVS 205
+C+ C HC C +CV DHHC W+ NCVG +NY S + + L W++
Sbjct: 414 YCSRCQNGKPPRCHHCSICQRCVLKMDHHCIWVVNCVGARNYNS---IHSSRLSWIA 575
>TC220652 weakly similar to UP|Q93VV0 (Q93VV0) AT3g09320/F3L24_19, partial
(13%)
Length = 1156
Score = 36.2 bits (82), Expect(2) = 2e-05
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 175 DHHCRWLNNCVGRKNYISFVCLM---AVSLVWVSCM 207
DHHC ++ NCVG N+ SF+ + +S ++VS M
Sbjct: 635 DHHCPFIGNCVGAANHRSFIAFLISAVLSTIYVSIM 742
Score = 30.4 bits (67), Expect(2) = 2e-05
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = +1
Query: 145 EDALFCTLCNAEVRKFSKHCRSCDKCVDG 173
E+ +C C+ + HCRSC KCV G
Sbjct: 544 ENYTYCHYCSKPKSPRAHHCRSCRKCVIG 630
>TC210916
Length = 546
Score = 30.8 bits (68), Expect = 2.1
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = -3
Query: 175 DHHCRWLNNCVGRKNYISFVCLMAVSLVWVSCMKMPI 211
D C++L C G SF CL +W+SC PI
Sbjct: 307 DS*CQFLITCSGNSPMCSFSCLFTSCSIWLSC*LGPI 197
>AW306923
Length = 423
Score = 30.8 bits (68), Expect = 2.1
Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 6/72 (8%)
Frame = +1
Query: 119 CCLCSFLAREDCRSDE----DFILQQQSGEE--DALFCTLCNAEVRKFSKHCRSCDKCVD 172
CC C C++++ ++IL Q+ ++ D+ C C +EV++ K C C KC
Sbjct: 169 CCAC-----RGCKTNQYN*INYILSQKKKKKTRDSFIC--CLSEVKQRIK-CELCIKCKI 324
Query: 173 GFDHHCRWLNNC 184
GF+ C NC
Sbjct: 325 GFN*FCNIGVNC 360
>TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment), partial
(11%)
Length = 944
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = -2
Query: 12 HTFQVVAITVFFLLCIAYYAF-FAPFLGKDIFEFVAFGVYSLLALSVFFLYVRC 64
H Q + V F + Y+ + P F F G++ L AL+VF++Y+RC
Sbjct: 838 HLVQPHCLLVCFHPLLQYFPLNYKPLQDYQNFFFFPNGIHFLHALNVFYIYLRC 677
>BG839937
Length = 754
Score = 29.6 bits (65), Expect = 4.6
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Frame = +3
Query: 112 NGCSKLGCCLCSFLAREDCRSDEDFILQQQSGE------EDALFCTLCN--AEVRKFSKH 163
N C +GC LCS DC E I S + E C CN +E+ + K
Sbjct: 564 NTCRWIGCDLCSHWTHTDCAIREQLICMGPSAKNGXGPSEMVFXCQACNRTSELLGWVKR 743
Query: 164 C 164
C
Sbjct: 744 C 746
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.354 0.157 0.536
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,921,911
Number of Sequences: 63676
Number of extensions: 590538
Number of successful extensions: 8187
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4665
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 3374
Number of HSP's gapped (non-prelim): 5234
length of query: 688
length of database: 12,639,632
effective HSP length: 104
effective length of query: 584
effective length of database: 6,017,328
effective search space: 3514119552
effective search space used: 3514119552
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC126786.8