TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126786.2 - phase: 0 
         (161 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC230305 similar to UP|Q9LM68 (Q9LM68) F2D10.35, partial (36%)        186  5e-48
TC230304 similar to UP|Q9LM68 (Q9LM68) F2D10.35, partial (23%)        105  7e-24
TC219538 homologue to UP|Q89X44 (Q89X44) Blr0478 protein, partia...    28  1.4
TC214015                                                               28  1.4
BG651978                                                               27  3.2
TC218809 weakly similar to UP|Q6K5G3 (Q6K5G3) Ankyrin repeat-lik...    27  4.2
BG405698 homologue to GP|20197025|gb| Expressed protein {Arabido...    27  4.2
TC232880 homologue to GB|AAM65705.1|21593738|AY088161 WRKY trans...    27  4.2
TC204354 similar to UP|Q852S8 (Q852S8) S-adenosylmethionine deca...    26  7.2
TC228321 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (11%)        26  9.4
CO982702                                                               26  9.4

>TC230305 similar to UP|Q9LM68 (Q9LM68) F2D10.35, partial (36%)
          Length = 478

 Score =  186 bits (471), Expect = 5e-48
 Identities = 84/106 (79%), Positives = 95/106 (89%)
 Frame = +3

Query: 1   ISRNLKYEDPFDNPLVKVSKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRP 60
           ISR LKYEDPF+NP VKV KS S+VEMCGKVYRLAP+TLTQE+QA HQ+RR RAYQWKRP
Sbjct: 159 ISRPLKYEDPFNNPFVKVGKSDSTVEMCGKVYRLAPITLTQEQQATHQKRRLRAYQWKRP 338

Query: 61  TVFLKEGESVPPDVDPDTIRWIPANHPFATTSTDIGEDFAHKNVSQ 106
           T+FL+EG+SVPPDVDPDT+RWIPANHPFATT+TD+ ED A  NV Q
Sbjct: 339 TIFLREGDSVPPDVDPDTVRWIPANHPFATTATDLDEDLAQNNVYQ 476


>TC230304 similar to UP|Q9LM68 (Q9LM68) F2D10.35, partial (23%)
          Length = 718

 Score =  105 bits (263), Expect = 7e-24
 Identities = 49/64 (76%), Positives = 54/64 (83%)
 Frame = +2

Query: 67  GESVPPDVDPDTIRWIPANHPFATTSTDIGEDFAHKNVSQKHGVPFRIQAEHEALQRKLE 126
           G+SV  DVDPDT+RWI  NHPFATT+TD+ ED A  NV QKHGVPF IQAEHEALQ+KLE
Sbjct: 2   GDSVXXDVDPDTVRWIXXNHPFATTATDLDEDLAQNNVYQKHGVPFXIQAEHEALQKKLE 181

Query: 127 ALQN 130
           ALQN
Sbjct: 182 ALQN 193


>TC219538 homologue to UP|Q89X44 (Q89X44) Blr0478 protein, partial (8%)
          Length = 1460

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 128 LQNVSLSRIRNFNSPMFDTVLEVVVQ--MPCLYP 159
           L N+ +SR+R+   P F + ++ VVQ  +PCL P
Sbjct: 144 LFNIVVSRVRSGQEPYFRSFVDPVVQKLLPCLCP 245


>TC214015 
          Length = 536

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = -2

Query: 31  VYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTV 62
           ++R     L + + A  QRRRS  + WKRP+V
Sbjct: 391 IHRKVKRVLCEVKNAGTQRRRSSLWWWKRPSV 296


>BG651978 
          Length = 421

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
 Frame = +2

Query: 1   ISRNLKYEDPFDNPLVKVSKSKSSVEMCGKVYRLAPVTLT--------QEEQAVHQRRRS 52
           ISR  K ED            + S ++CG+     P T+         Q     HQR RS
Sbjct: 92  ISREPKEED---------GAVEQSPKLCGRSSETIPGTVVGS*SYPIHQHHSRNHQRNRS 244

Query: 53  RAYQWKRPTVFLKEGESVP 71
            ++Q   PT+  K   S P
Sbjct: 245 ASFQALAPTLCHKRRRSPP 301


>TC218809 weakly similar to UP|Q6K5G3 (Q6K5G3) Ankyrin repeat-like protein,
           partial (11%)
          Length = 1268

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 82  IPANHPFATTSTDIGEDFAHKNVSQKHGVPFRIQAEHEALQRKLEALQNVSLSRIRNFNS 141
           I A+H  AT +   G+ F H  V       F    +H  L ++L + + V +  I N  +
Sbjct: 69  IGASHSLATLTNHYGDTFLHMAVVGFRSPGFCRLDKHTELMKQLTSEKIVKMKDIINVRN 248

Query: 142 PMFDTVLEVVV 152
               T L V V
Sbjct: 249 NDGRTALHVAV 281


>BG405698 homologue to GP|20197025|gb| Expressed protein {Arabidopsis
           thaliana}, partial (32%)
          Length = 318

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -2

Query: 6   KYEDPFDNPLVKVSKSKSSVEMCG 29
           ++  P+DNPL+ V  S S    CG
Sbjct: 149 RWLSPYDNPLIVVQPSSSPYSCCG 78


>TC232880 homologue to GB|AAM65705.1|21593738|AY088161 WRKY transcription
           factor 12 {Arabidopsis thaliana;} , partial (24%)
          Length = 844

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -1

Query: 6   KYEDPFDNPLVKVSKSKSSVEMCG 29
           ++  P+DNPL+ V  S S    CG
Sbjct: 493 RWLSPYDNPLIVVQPSSSPYSCCG 422


>TC204354 similar to UP|Q852S8 (Q852S8) S-adenosylmethionine decarboxylase,
            partial (83%)
          Length = 1790

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 9/46 (19%), Positives = 24/46 (51%)
 Frame = -2

Query: 19   SKSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVFL 64
            S SKS +  CG+++ +   ++ +  + V   + + A  + +P + +
Sbjct: 1141 SNSKSDISDCGRIFLIPEFSVIKAAEDVFSLKNTEALSFSKPVMHI 1004


>TC228321 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (11%)
          Length = 940

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 86  HPFATTSTDIGEDFAHKNVSQKHGVPFRIQAEHEALQRK 124
           H   TT++ +G      +  Q+H +P+R+   H AL+++
Sbjct: 234 HRVTTTTSQLGR--VDPSRLQRHSLPWRVPRRHPALRQR 344


>CO982702 
          Length = 717

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 81  WIPANHPFATTSTDIGEDFA--HKNVSQK 107
           WI   HPFAT+++ I +D +  H N+ +K
Sbjct: 582 WITYRHPFATSAS*INKDTSIFHYNLIRK 668


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,174,312
Number of Sequences: 63676
Number of extensions: 91202
Number of successful extensions: 403
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of query: 161
length of database: 12,639,632
effective HSP length: 90
effective length of query: 71
effective length of database: 6,908,792
effective search space: 490524232
effective search space used: 490524232
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)