BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126783.2 + phase: 0
(147 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203626 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 283 3e-77
TC203270 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 283 3e-77
TC203304 similar to UP|O82529 (O82529) Ribosomal protein L27a, p... 273 2e-74
TC203703 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 273 2e-74
TC203438 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 273 3e-74
TC203647 homologue to UP|O82529 (O82529) Ribosomal protein L27a,... 270 2e-73
AW459111 similar to GP|3608481|gb|A ribosomal protein L27a {Petu... 176 5e-45
BE440483 similar to GP|3608481|gb| ribosomal protein L27a {Petun... 170 3e-43
BG239019 similar to GP|3608481|gb| ribosomal protein L27a {Petun... 157 1e-39
BF067302 143 3e-35
BE022344 weakly similar to GP|3608481|gb|A ribosomal protein L27... 118 1e-27
TC224179 similar to UP|RL28_NEUCR (P08978) 60S ribosomal protein... 117 2e-27
BE608604 similar to GP|21553702|gb| 60S ribosomal protein L27A {... 97 3e-21
BG315939 similar to GP|7959355|dbj| 60S ribosomal protein L27a {... 89 6e-19
BE801178 weakly similar to GP|3608481|gb|A ribosomal protein L27... 75 9e-15
BF070779 42 1e-08
AI443106 39 0.001
TC203546 homologue to UP|Q9MAW6 (Q9MAW6) 60S ribosomal protein L... 29 0.72
BE057430 similar to GP|17978974|gb| At1g31940/F5M6.6 {Arabidopsi... 28 1.6
TC226891 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-... 23 2.5
>TC203626 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 756
Score = 283 bits (723), Expect = 3e-77
Identities = 133/147 (90%), Positives = 143/147 (96%)
Frame = +1
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 52 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 231
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
FHKLRNKFY+PI+NIDK+ SL+PQ+VK+KA KENKAP+IDVTQFG+FK+LGKGVLPQNQP
Sbjct: 232 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 411
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
VVK KLISKIAEKKIKEAGGAVVLTA
Sbjct: 412 VVVKAKLISKIAEKKIKEAGGAVVLTA 492
>TC203270 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 709
Score = 283 bits (723), Expect = 3e-77
Identities = 133/147 (90%), Positives = 143/147 (96%)
Frame = +2
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 71 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 250
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
FHKLRNKFY+PI+NIDK+ SL+PQ+VK+KA KENKAP+IDVTQFG+FK+LGKGVLPQNQP
Sbjct: 251 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 430
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
VVK KLISKIAEKKIKEAGGAVVLTA
Sbjct: 431 VVVKAKLISKIAEKKIKEAGGAVVLTA 511
>TC203304 similar to UP|O82529 (O82529) Ribosomal protein L27a, partial (95%)
Length = 870
Score = 273 bits (698), Expect = 2e-74
Identities = 130/148 (87%), Positives = 142/148 (95%), Gaps = 1/148 (0%)
Frame = +2
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
+TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 17 LTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 196
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALK-ENKAPVIDVTQFGFFKLLGKGVLPQNQ 119
FHKLRNKFY+PIVN++K+ SLIPQD KEKALK ++ AP+IDVTQ G+FK+LGKGVLPQNQ
Sbjct: 197 FHKLRNKFYSPIVNVEKLWSLIPQDAKEKALKSKDTAPLIDVTQHGYFKVLGKGVLPQNQ 376
Query: 120 PFVVKTKLISKIAEKKIKEAGGAVVLTA 147
PFVVK KLISKIAEKKIKEAGGAV+LTA
Sbjct: 377 PFVVKAKLISKIAEKKIKEAGGAVLLTA 460
>TC203703 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 1049
Score = 273 bits (698), Expect = 2e-74
Identities = 129/147 (87%), Positives = 140/147 (94%)
Frame = +3
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 351 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 530
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
FHKLRNKFYNPI+NIDK+ SL+PQ+ K+KA + KAP++DVTQFG+FK+LGKGVLPQNQP
Sbjct: 531 FHKLRNKFYNPIINIDKLWSLLPQEAKDKATAD-KAPLLDVTQFGYFKVLGKGVLPQNQP 707
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
VVK KLISKIAEKKIKEAGGAVVLTA
Sbjct: 708 LVVKAKLISKIAEKKIKEAGGAVVLTA 788
>TC203438 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(96%)
Length = 891
Score = 273 bits (697), Expect = 3e-74
Identities = 131/148 (88%), Positives = 141/148 (94%), Gaps = 1/148 (0%)
Frame = +3
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 210 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 389
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALK-ENKAPVIDVTQFGFFKLLGKGVLPQNQ 119
FHKLRNKFY+PIVNIDK+ SLIPQD K+KALK ++ AP+IDVTQ G+FK+LGKGVLPQNQ
Sbjct: 390 FHKLRNKFYSPIVNIDKLWSLIPQDAKDKALKSKDTAPLIDVTQHGYFKVLGKGVLPQNQ 569
Query: 120 PFVVKTKLISKIAEKKIKEAGGAVVLTA 147
P VVK KLISKIAEKKIKEAGGAV+LTA
Sbjct: 570 PIVVKAKLISKIAEKKIKEAGGAVLLTA 653
>TC203647 homologue to UP|O82529 (O82529) Ribosomal protein L27a, partial
(94%)
Length = 796
Score = 270 bits (689), Expect = 2e-73
Identities = 128/147 (87%), Positives = 139/147 (94%)
Frame = +2
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 74 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 253
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQP 120
FHKLRNKFY PIVNIDK+ SL+PQ+ K+KA + KAP++DVTQFG+FK+LGKGVLPQNQP
Sbjct: 254 FHKLRNKFYCPIVNIDKLWSLLPQEAKDKATAD-KAPLLDVTQFGYFKVLGKGVLPQNQP 430
Query: 121 FVVKTKLISKIAEKKIKEAGGAVVLTA 147
VVK KL+SKIAEKKIKEAGGAVVLTA
Sbjct: 431 LVVKAKLVSKIAEKKIKEAGGAVVLTA 511
>AW459111 similar to GP|3608481|gb|A ribosomal protein L27a {Petunia x
hybrida}, partial (58%)
Length = 337
Score = 176 bits (445), Expect = 5e-45
Identities = 81/110 (73%), Positives = 95/110 (85%), Gaps = 1/110 (0%)
Frame = +1
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
+TTRFKKNRKKRGHVSAGH RIGKH KHP GRGNA GMHHH+ILFDKYHP +F KV ++Y
Sbjct: 7 VTTRFKKNRKKRGHVSAGHSRIGKHHKHPSGRGNASGMHHHKILFDKYHPEFFEKVXIKY 186
Query: 61 FHKLRNKFYNPIVNIDKIASLIPQDVKEKALK-ENKAPVIDVTQFGFFKL 109
FHKL NKFY+PIVNIDK+ SLIPQD K+KALK ++ P+I+VTQ +FK+
Sbjct: 187 FHKLHNKFYSPIVNIDKL*SLIPQDTKDKALKSKDTTPLINVTQHKYFKV 336
>BE440483 similar to GP|3608481|gb| ribosomal protein L27a {Petunia x
hybrida}, partial (68%)
Length = 436
Score = 170 bits (430), Expect = 3e-43
Identities = 93/147 (63%), Positives = 101/147 (68%), Gaps = 3/147 (2%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TTRFKKNRKKRGHVS G G I KHRKHP GR NAGGMHHHRILF KYHPG+FGKV MRYF
Sbjct: 2 TTRFKKNRKKRGHVSVGPG*IRKHRKHPVGRANAGGMHHHRILFHKYHPGFFGKVRMRYF 181
Query: 62 HKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKG---VLPQN 118
HKLRNKFY+PI+NI K+ SL+P DV +KA EN AP+I GKG V P
Sbjct: 182 HKLRNKFYSPILNIGKLWSLVP*DVMDKAFNENNAPLI*RHAVRVL*CSGKGRFAVEPVR 361
Query: 119 QPFVVKTKLISKIAEKKIKEAGGAVVL 145
IS AE I +AGGAVVL
Sbjct: 362 SGLCQSLFPIS--AEMNINDAGGAVVL 436
>BG239019 similar to GP|3608481|gb| ribosomal protein L27a {Petunia x
hybrida}, partial (78%)
Length = 436
Score = 157 bits (398), Expect = 1e-39
Identities = 85/144 (59%), Positives = 100/144 (69%)
Frame = +2
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
TRF KN KRGHVSAG +HHH+ILF YH F V MR+F
Sbjct: 2 TRFYKNMNKRGHVSAGRAESENS*SSLYDAIMLEALHHHQILFKGYHA*TF*NVLMRFFL 181
Query: 63 KLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQPFV 122
KLRN+FY+ IVNIDK+ SL+P +VK+KA KENKAP+I VTQFG+FK+LGKGVLP+NQP V
Sbjct: 182 KLRNRFYSAIVNIDKLWSLVPHEVKDKASKENKAPLIGVTQFGYFKVLGKGVLPENQPVV 361
Query: 123 VKTKLISKIAEKKIKEAGGAVVLT 146
K LI ++AEKKI EAG A VLT
Sbjct: 362 GKA*LILQMAEKKINEAGRAFVLT 433
>BF067302
Length = 433
Score = 143 bits (361), Expect = 3e-35
Identities = 81/144 (56%), Positives = 95/144 (65%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TT KN KKRGHVSAGHGRIGKHRKH GGR NA MHHH IL +P +FG V MRY
Sbjct: 2 TTCLMKNTKKRGHVSAGHGRIGKHRKHLGGRRNA*CMHHHLILVYMNNPWFFGGVRMRYS 181
Query: 62 HKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQPF 121
H LR FY+ ++NI K+ L DVK+ A ENKAPVI VTQ FFK +GKGV+ N
Sbjct: 182 HMLRLTFYSMMLNICKLWILFTLDVKDDASNENKAPVICVTQILFFKGVGKGVMT*N*FV 361
Query: 122 VVKTKLISKIAEKKIKEAGGAVVL 145
V ++ I +K I + GGAVV+
Sbjct: 362 GVIA*RMTTIGDKMINDVGGAVVV 433
>BE022344 weakly similar to GP|3608481|gb|A ribosomal protein L27a {Petunia
x hybrida}, partial (58%)
Length = 262
Score = 118 bits (295), Expect = 1e-27
Identities = 54/87 (62%), Positives = 68/87 (78%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TTRF NR KRGHV+AGHGRIGKH+ HPGGR NAGGM H R+LF+K+ PG FGKV MR F
Sbjct: 2 TTRFTMNRNKRGHVTAGHGRIGKHQMHPGGRCNAGGMLHRRMLFNKFRPGLFGKVRMRCF 181
Query: 62 HKLRNKFYNPIVNIDKIASLIPQDVKE 88
KL ++FY+P++ I K+ L+ Q+V +
Sbjct: 182RKLLSRFYSPVLIIYKLWFLVSQEVMD 262
>TC224179 similar to UP|RL28_NEUCR (P08978) 60S ribosomal protein L28 (L27A)
(L29) (CRP1), partial (71%)
Length = 647
Score = 117 bits (294), Expect = 2e-27
Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Frame = +3
Query: 46 DKYHPGYFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALK---ENKAPVIDVT 102
DKYHPGYFGKVGMR FH LRN + P +N+DK+ SL+P DV+EK LK + AP+ID+
Sbjct: 9 DKYHPGYFGKVGMRRFHLLRNHQWKPEINVDKLWSLVPADVREKTLKNAASDSAPLIDLN 188
Query: 103 QFGFFKLLGKGVLPQNQPFVVKTKLISKIAEKKIKEAGGAVVLTA 147
G+ KLLGKG LP+ P VV+ + +S AEKKI +AGG V L A
Sbjct: 189 ALGYAKLLGKGRLPE-APIVVRARYVSAEAEKKITDAGGVVELVA 320
>BE608604 similar to GP|21553702|gb| 60S ribosomal protein L27A
{Arabidopsis thaliana}, partial (39%)
Length = 181
Score = 97.1 bits (240), Expect = 3e-21
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
T FKKNRKKRGH SAGHGRIGK+R GRG+AGGMHHHRIL +YH G+FGKVGM YF
Sbjct: 2 TIMFKKNRKKRGHFSAGHGRIGKYRTLS*GRGDAGGMHHHRILLLQYHLGFFGKVGMCYF 181
>BG315939 similar to GP|7959355|dbj| 60S ribosomal protein L27a {Panax
ginseng}, partial (34%)
Length = 163
Score = 89.4 bits (220), Expect = 6e-19
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGK 55
TTRFK KKRGHVSAGHGRI HRKHP GRG+AGGMHHH IL +YHPG+ G+
Sbjct: 2 TTRFKMTGKKRGHVSAGHGRI*XHRKHPRGRGDAGGMHHHCILCYEYHPGFSGR 163
>BE801178 weakly similar to GP|3608481|gb|A ribosomal protein L27a {Petunia
x hybrida}, partial (52%)
Length = 235
Score = 75.5 bits (184), Expect = 9e-15
Identities = 40/77 (51%), Positives = 46/77 (58%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
TT F KN G V AGHGR GK R HP AGG+H R LF KYHPG F K +RYF
Sbjct: 2 TTTFMKNWINIGLVYAGHGRFGKLRMHPFSHRYAGGLHDLRFLFYKYHPGLFMKAVLRYF 181
Query: 62 HKLRNKFYNPIVNIDKI 78
KL +FY ++N K+
Sbjct: 182LKLLCRFYCSMINRVKL 232
>BF070779
Length = 382
Score = 41.6 bits (96), Expect(2) = 1e-08
Identities = 24/64 (37%), Positives = 32/64 (49%)
Frame = +3
Query: 51 GYFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLL 110
G G VGMR ++L K Y + I K SL QD ++ K+N P+I +T K L
Sbjct: 174 GCSGAVGMRS*YRLETKCYGVSLYIHKFCSLTSQDGSDEGFKDN*VPLITITHLPCLKAL 353
Query: 111 GKGV 114
GV
Sbjct: 354 *MGV 365
Score = 33.5 bits (75), Expect(2) = 1e-08
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Frame = +1
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGG-RGNAGGMHHHRILFDKYHPGYFGK 55
T R +N +G V AGH +GKHR H GG+ RIL + G G+
Sbjct: 25 TIR*TRNAMNKGPVIAGHALLGKHRTHHWTISAMRGGIRKRRILLHETRVGARGR 189
>AI443106
Length = 160
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/44 (47%), Positives = 23/44 (51%)
Frame = +1
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILF 45
TTR KNR GH H + +H KHP NA MH H ILF
Sbjct: 28 TTRSHKNRTWTGHERPDHR*MTQHWKHPARPRNAVCMHQHWILF 159
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/52 (26%), Positives = 26/52 (49%)
Frame = +2
Query: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYF 53
+ R +K+R++R H+ GHGR+ K +H +L+ + G+F
Sbjct: 2 SARLEKSRRQRAHIRTGHGRVTKDLTTVE*HSTGSTLHDPVMLYACTNTGFF 157
>TC203546 homologue to UP|Q9MAW6 (Q9MAW6) 60S ribosomal protein L27a, partial
(14%)
Length = 737
Score = 29.3 bits (64), Expect = 0.72
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 73 VNIDKIASLIPQDVKEKA 90
VNIDK+ SL+PQ+ K+KA
Sbjct: 673 VNIDKLWSLLPQEAKDKA 726
>BE057430 similar to GP|17978974|gb| At1g31940/F5M6.6 {Arabidopsis thaliana},
partial (19%)
Length = 413
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 49 HPGYFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDV 101
HPG+F VG +F + +K Y P S +P K+ + K DV
Sbjct: 359 HPGHFAFVGGHFFRQRISKIYPP-------CSFVPTQKKKNNTHKAKNDFFDV 222
>TC226891 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-binding
protein {Arabidopsis thaliana;} , partial (41%)
Length = 1187
Score = 23.5 bits (49), Expect(2) = 2.5
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = -3
Query: 71 PIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLG 111
PI+ + +ASL+ +DVKE+ + V + F+++G
Sbjct: 501 PILPSETLASLVTEDVKEEEEVVERVKVSSLLLGFEFRMVG 379
Score = 22.3 bits (46), Expect(2) = 2.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 5 FKKNRKKRGHVSAGHGRIGKHRKHPGGRGNA 35
++ R++RG S G R R+ GG+G +
Sbjct: 587 WRVRRQRRGTFSGGGRREVAWRRREGGKGRS 495
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.142 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,540,880
Number of Sequences: 63676
Number of extensions: 96989
Number of successful extensions: 530
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of query: 147
length of database: 12,639,632
effective HSP length: 88
effective length of query: 59
effective length of database: 7,036,144
effective search space: 415132496
effective search space used: 415132496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC126783.2