BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.8 + phase: 0 /pseudo
(250 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208094 similar to UP|CCI1_ARATH (Q9M643) Cycloeucalenol cycloi... 199 8e-52
TC204031 homologue to UP|Q9XQB6 (Q9XQB6) Chlorophyll a/b-binding... 31 0.46
TC210864 similar to GB|AAM19886.1|20453295|AY097370 At2g46330/F1... 31 0.46
TC221209 31 0.61
TC221107 similar to UP|Q6NLR6 (Q6NLR6) At4g24230, partial (14%) 26 0.84
BI973599 30 1.0
TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop... 30 1.0
BE331126 30 1.4
TC211424 homologue to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, pa... 29 2.3
TC224552 homologue to UP|METK_CATRO (Q96551) S-adenosylmethionin... 29 2.3
CF922833 29 2.3
TC219660 similar to UP|Q9FVD3 (Q9FVD3) Hexokinase, partial (82%) 29 2.3
TC227059 similar to UP|O81503 (O81503) F9D12.18 protein, partial... 28 3.9
TC228950 28 3.9
BQ079751 similar to GP|22202760|dbj P0039H02.3 {Oryza sativa (ja... 28 3.9
TC228686 weakly similar to PIR|H64231|H64231 protein L homolog -... 28 5.1
TC231405 weakly similar to GB|BAA21551.1|2274801|AB005750 riboso... 27 6.7
TC223517 weakly similar to UP|Q9LUM1 (Q9LUM1) Gb|AAF02862.1, par... 27 6.7
TC204503 weakly similar to UP|Q9S7M1 (Q9S7M1) ESTs C99517(E20319... 27 8.8
TC224582 homologue to UP|G3PC_DIACA (P34921) Glyceraldehyde-3-ph... 27 8.8
>TC208094 similar to UP|CCI1_ARATH (Q9M643) Cycloeucalenol cycloisomerase
(Cycloeucalenol--obtusifoliol isomerase) (Cyclopropyl
sterol isomerase) , partial (98%)
Length = 1321
Score = 199 bits (507), Expect = 8e-52
Identities = 93/105 (88%), Positives = 100/105 (94%)
Frame = +1
Query: 146 SYLETLAISNFPYYEFVDRESMYKVGSLFYAIYFIVSFPMFLRIDEKPGDKWDLPRVAVD 205
+YLETLAISNFPYY+FVDR+SMYKVGSLFYAIYFIVSFPMFLRIDEKPGDKWDLPRVAVD
Sbjct: 694 AYLETLAISNFPYYQFVDRDSMYKVGSLFYAIYFIVSFPMFLRIDEKPGDKWDLPRVAVD 873
Query: 206 ALGAAMLVTIILDLWRIFLGPIVPVSEAKQCSPTGLPWFSTHANL 250
ALGAAMLVTIILDLWRIFLGPIVP+++ KQC GLPWF+ HANL
Sbjct: 874 ALGAAMLVTIILDLWRIFLGPIVPIADTKQCPQVGLPWFTGHANL 1008
Score = 148 bits (373), Expect(2) = 3e-50
Identities = 65/91 (71%), Positives = 78/91 (85%)
Frame = +1
Query: 21 SSSSASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKLYENFTELEYLLLGL 80
S +A + SLW APN SKRWGELFFLLYTPFWL+L LGIV+P+ LYE FTELEYLL+GL
Sbjct: 151 SKMTAPTSSSLWLAPNPSKRWGELFFLLYTPFWLTLCLGIVIPFNLYEKFTELEYLLIGL 330
Query: 81 ISAVPAFLIPMLFVGKADKGISWQDRYWVKS 111
+SAVPAF++P+L VGK D+ ISW+DRYWVK+
Sbjct: 331 VSAVPAFVVPLLLVGKVDRSISWKDRYWVKA 423
Score = 67.8 bits (164), Expect(2) = 3e-50
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 110 KSMDNNLQLCWELFLDSLLFHSSGCILYLSFMENEQ 145
+S+DNNLQLCWELFLD+LLF+SS CILYLS MENEQ
Sbjct: 423 QSLDNNLQLCWELFLDTLLFYSSWCILYLSIMENEQ 530
>TC204031 homologue to UP|Q9XQB6 (Q9XQB6) Chlorophyll a/b-binding protein
CP24, partial (23%)
Length = 851
Score = 31.2 bits (69), Expect = 0.46
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -2
Query: 114 NNLQLCWELFLDSLLFHSSGCILYLSFM 141
N ++ WE+F SL+F C+LYL F+
Sbjct: 784 NKVEFLWEIFSQSLVFRE*RCLLYL*FL 701
>TC210864 similar to GB|AAM19886.1|20453295|AY097370 At2g46330/F11C10.2
{Arabidopsis thaliana;} , partial (47%)
Length = 596
Score = 31.2 bits (69), Expect = 0.46
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -2
Query: 114 NNLQLCWELFLDSLLFHSSGCILYLSFM 141
N ++ WE+F SL+F C+LYL F+
Sbjct: 517 NKVEFLWEIFSQSLVFRE*RCLLYL*FL 434
>TC221209
Length = 939
Score = 30.8 bits (68), Expect = 0.61
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = -1
Query: 42 GELFFLLYTP----FWLSLSLGIVVPYKLYENFTELEYLL 77
G++ FL+ TP F ++ SLGI + +ENF +E++L
Sbjct: 753 GDILFLVSTPQIKCFSMTASLGIAMKRTPWENFARIEFIL 634
>TC221107 similar to UP|Q6NLR6 (Q6NLR6) At4g24230, partial (14%)
Length = 498
Score = 25.8 bits (55), Expect(2) = 0.84
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +1
Query: 72 ELEYLLLGLISAVPAFLIPMLFVGKADKGISWQDRYW 108
+L+ LL I+A + M+ +GK KG SW+ W
Sbjct: 187 QLKLKLLLQIAA*KRTSMMMMMIGKGLKGASWRKSLW 297
Score = 23.1 bits (48), Expect(2) = 0.84
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 119 CWELFLDSLLFHSSGC 134
CW+ F D +++ S GC
Sbjct: 341 CWKQFEDGVVWASQGC 388
>BI973599
Length = 437
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/64 (32%), Positives = 31/64 (47%)
Frame = +1
Query: 5 ILFSKSLFCVSVLEISSSSSASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPY 64
I + + F V+V I+SS S+ P SL+ P+ L T WLS SLG+
Sbjct: 148 ICLADTAFHVTVFAINSSMSSCPPSSLFVLPHHL*SGQAPSPLFATLMWLSASLGLCSAS 327
Query: 65 KLYE 68
L++
Sbjct: 328 ALFD 339
>TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
precursor, partial (78%)
Length = 731
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 24 SASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYK 65
+ +P P F PN + G F L+ T F L L I+VP+K
Sbjct: 235 AVTPPPRPPFTPNTALALGNAFRLVTTAFLLRKELLIIVPHK 110
>BE331126
Length = 358
Score = 29.6 bits (65), Expect = 1.4
Identities = 24/72 (33%), Positives = 34/72 (46%)
Frame = +1
Query: 10 SLFCVSVLEISSSSSASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKLYEN 69
+LFC L +S S +S ++FAP +G F TPF I +K+Y
Sbjct: 160 TLFCGLFLSLSRVSFSSLFSVIFFAP-----YGSRLFFFLTPF-----NSIYPSHKIYNF 309
Query: 70 FTELEYLLLGLI 81
F L + LLGL+
Sbjct: 310 FLFLSF-LLGLV 342
>TC211424 homologue to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, partial (7%)
Length = 566
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 8 SKSLFCVSVLEISSSSSASPTPSLWFAPN 36
S+ LF + L+ S+++S +P P WF PN
Sbjct: 401 SEELFGLEELKPSTANSHTPEPRSWFGPN 487
>TC224552 homologue to UP|METK_CATRO (Q96551) S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1) (AdoMet synthetase 1)
, complete
Length = 1784
Score = 28.9 bits (63), Expect = 2.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 130 HSSGCILYLSFMENEQSYLETLAISNFPYYEFVDRESMYK---VGSLFYAIYFIVSFPMF 186
HS G L+ + S+ T A+ YY SM+ + S+F+ +YF ++FP+F
Sbjct: 1281 HSRGRRYLLN*KGFQHSWQGTFALLLASYYLIAKIFSMFPSLLLNSVFFFLYFFMNFPLF 1460
>CF922833
Length = 664
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 42 GELFFLLYTPFWLSLSLGIVVPYKLYENFTELEY 75
G LFFLL T FW+SL +++ YE L Y
Sbjct: 5 GSLFFLLITFFWISLE--VIMDTSRYEGKRVLRY 100
>TC219660 similar to UP|Q9FVD3 (Q9FVD3) Hexokinase, partial (82%)
Length = 1222
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 179 FIVSFPMFLRIDEKPGDKWDLPRVAVDALGAAMLVTIILDL 219
FIVS P+FLR+ + P + PRVA + + I D+
Sbjct: 1124 FIVSLPIFLRMPKIPAAERRAPRVATISQSCTTIFRIFRDV 1002
>TC227059 similar to UP|O81503 (O81503) F9D12.18 protein, partial (92%)
Length = 2147
Score = 28.1 bits (61), Expect = 3.9
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = -3
Query: 1 MVSSILFSKSLFCVSVLEISSSSSASPTPSLWFAPNLSKRW-------GELFFLLYTPFW 53
M SS ++S S+F + S SSSA +WF+P L R G FLL P
Sbjct: 1035 MHSSSIYSSSIFNKRLQSSSLSSSAF----VWFSPFLYSRGQSRRMIRGLTIFLLILP-G 871
Query: 54 LSLSLGIVVPYKLYEN 69
+ SL I+ P + E+
Sbjct: 870 ATTSLFIITPLRTLES 823
>TC228950
Length = 1090
Score = 28.1 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 97 ADKGISWQDRYWVKSMD 113
ADK I WQ++YW S D
Sbjct: 169 ADKAIEWQEKYWEASDD 219
>BQ079751 similar to GP|22202760|dbj P0039H02.3 {Oryza sativa (japonica
cultivar-group)}, partial (7%)
Length = 403
Score = 28.1 bits (61), Expect = 3.9
Identities = 31/116 (26%), Positives = 50/116 (42%), Gaps = 8/116 (6%)
Frame = +3
Query: 30 SLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKL-----YENFTELEYLLLGLISAV 84
SLWF ++ LL+TP LSLSL + + L ++NF + L+ L
Sbjct: 36 SLWFRRPKIQQLLPF*CLLWTPLSLSLSLSLSLXVSLSLSX*FDNFFFTTFSLIHL---- 203
Query: 85 PAFLIPMLFVGKADKGISWQDRYWVKSMDNNLQLCWELFLDS---LLFHSSGCILY 137
L+ +L DK + W K ++ L W+L + + L+ S C+ Y
Sbjct: 204 ---LVMLLMATLPDKVM----LKWDKFLEATLIWEWKLLISTYMKLINKSISCLCY 350
>TC228686 weakly similar to PIR|H64231|H64231 protein L homolog - Mycoplasma
genitalium {Mycoplasma genitalium;} , partial (5%)
Length = 1408
Score = 27.7 bits (60), Expect = 5.1
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 6/44 (13%)
Frame = -3
Query: 45 FFLLYTPFWL------SLSLGIVVPYKLYENFTELEYLLLGLIS 82
F LL++PF L SLS G + L F L YLLL +S
Sbjct: 878 FILLFSPFHLKFPLLFSLSTGFLSKCNLTSKFLSLPYLLLFTLS 747
>TC231405 weakly similar to GB|BAA21551.1|2274801|AB005750 ribosomal protein
L4 {Schizosaccharomyces pombe;} , partial (85%)
Length = 858
Score = 27.3 bits (59), Expect = 6.7
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 21 SSSSASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSL 58
SSS+ S T LW P W L +L WLS SL
Sbjct: 418 SSSTVSTTSPLWSRPR-RLNWSSLLMMLTPLSWLSGSL 528
>TC223517 weakly similar to UP|Q9LUM1 (Q9LUM1) Gb|AAF02862.1, partial (25%)
Length = 445
Score = 27.3 bits (59), Expect = 6.7
Identities = 10/18 (55%), Positives = 15/18 (82%)
Frame = +3
Query: 120 WELFLDSLLFHSSGCILY 137
+ L+L SL+FHS+GC +Y
Sbjct: 105 YTLWLKSLVFHSNGCTVY 158
>TC204503 weakly similar to UP|Q9S7M1 (Q9S7M1) ESTs C99517(E20319), partial
(3%)
Length = 829
Score = 26.9 bits (58), Expect = 8.8
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Frame = -2
Query: 86 AFLIPMLFVGKADKGISWQDRYWVKSMDNNLQLCWELFLDSLLFHS---SGCILYLS 139
AF MLF K +G+ WV ++ L L +FL++L H + C+ +LS
Sbjct: 228 AFSFLMLFQPKPKQGLCRGPLLWVD*VEGTLLLLGTVFLENLNNHGVLRTFCLCFLS 58
>TC224582 homologue to UP|G3PC_DIACA (P34921) Glyceraldehyde-3-phosphate
dehydrogenase, cytosolic , partial (58%)
Length = 971
Score = 26.9 bits (58), Expect = 8.8
Identities = 15/32 (46%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Frame = -3
Query: 116 LQLCWELFLDSLLFH-SSGCILYLSFMENEQS 146
LQ CWEL+ LFH SS C+ M+++QS
Sbjct: 231 LQCCWELY*RKQLFHPSSPCL-----MDHQQS 151
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,604,387
Number of Sequences: 63676
Number of extensions: 245628
Number of successful extensions: 2036
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of query: 250
length of database: 12,639,632
effective HSP length: 95
effective length of query: 155
effective length of database: 6,590,412
effective search space: 1021513860
effective search space used: 1021513860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC126782.8