BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.17 - phase: 0 /pseudo
(346 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CD403197 101 6e-22
BE211681 41 0.001
CO983179 33 0.15
TC207250 similar to UP|Q9LW75 (Q9LW75) Dbj|BAA81871.1, partial (... 33 0.25
AW396256 weakly similar to GP|4097880|gb| polyprotein {Bean pod ... 31 0.72
TC223854 29 2.7
TC207592 similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (7%) 29 3.6
TC231620 28 4.7
TC233021 28 6.1
>CD403197
Length = 702
Score = 101 bits (251), Expect = 6e-22
Identities = 46/59 (77%), Positives = 54/59 (90%)
Frame = +1
Query: 9 MEQTLWGHLPVLLNVSSKESIEFILQALWRTRKTGLQSDDRCIIQDMLQLQNDYDLDPV 67
MEQT+WGHLPVL+ +SKESIE+ILQALWRTRKTGL + DRCIIQ+MLQLQN+ DLDP+
Sbjct: 106 MEQTIWGHLPVLVRANSKESIEYILQALWRTRKTGLGTTDRCIIQEMLQLQNESDLDPL 282
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +2
Query: 292 FWFASEC*SGGVFMKIPARMIIQSCFPVKFCLNCKSY*HFCCRSFSNSGKKMC*K 346
FWFASEC*SGGVFM+ AR I +SC PV+FCLNCK+ *HFCC SFS SG+KM *K
Sbjct: 281 FWFASEC*SGGVFMRTLARRIFRSCSPVRFCLNCKNC*HFCCTSFSESGRKM**K 445
>BE211681
Length = 324
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = +1
Query: 20 LLNVSSKESIEFILQALWRTRKTGLQSDDRCIIQDMLQLQNDYDLDPV 67
L + S+E++ +L LW TRKTGL D+ Q +L L + LDPV
Sbjct: 19 LSQIESEETLNQMLCTLWSTRKTGLPLSDKSHFQSLLHLPSPSHLDPV 162
>CO983179
Length = 831
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 142 MKTTYQ--YDMFISCFQLIFISSLR*LM*TTY 171
+K T Q YDM ISCFQLI S L *+M TTY
Sbjct: 411 LKKTSQ*AYDMSISCFQLISTSILG*MMKTTY 316
>TC207250 similar to UP|Q9LW75 (Q9LW75) Dbj|BAA81871.1, partial (26%)
Length = 927
Score = 32.7 bits (73), Expect = 0.25
Identities = 17/42 (40%), Positives = 21/42 (49%)
Frame = -3
Query: 285 RCNSIYSFWFASEC*SGGVFMKIPARMIIQSCFPVKFCLNCK 326
RC Y WF + * GGV K P + C VK C+NC+
Sbjct: 220 RCFVAYLNWFGIKI*CGGV-EKFPILGKVAQCTSVKMCVNCE 98
>AW396256 weakly similar to GP|4097880|gb| polyprotein {Bean pod mottle
virus}, partial (1%)
Length = 445
Score = 31.2 bits (69), Expect = 0.72
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 19/119 (15%)
Frame = -2
Query: 161 SSLR*LM*TTYS-SYKKL*LYFILCYRNSLYKCLPYDSVY---TMNCTLSCLS------- 209
SS+ L+ T+ + S+ L + FILC R S C+ Y S++ T+ + SC+S
Sbjct: 390 SSISSLLRTSVTFSHPTLSISFILCLRASSLLCI-YISLHPFITLTLSASCMSIQLHASS 214
Query: 210 -------TCAKSSFFSKVHLHL*TLHCLVSH-LNILFISYYLINTYILFLIS*WLVLIF 260
T + SF+ ++++ LH L+ H L+ LF+S L +LF I ++ +F
Sbjct: 213 LIFVHILTLSSPSFYPSLYIY---LHFLLRHSLSALFLSCSL---SLLFFIPSVIIFLF 55
>TC223854
Length = 557
Score = 29.3 bits (64), Expect = 2.7
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 190 YKCLPYDSVYTMNCTLSCLSTCAKSSFFSKVHLHL*TLHCLVSHLNILFISYYLINTYI 248
+ C ++S + C +S +S ++ H+ * L HL+I+F+ Y +INT +
Sbjct: 548 FLCANFNSSTFIFCFISIISYYKMTNMTXXTHIRR*----LQQHLSIIFLVYLMINTIV 384
>TC207592 similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (7%)
Length = 674
Score = 28.9 bits (63), Expect = 3.6
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 192 CLPYDSVYTMNCTLSCLSTCAKSSFFSKVHLHL*TLHCLVSHLNILFISYYLIN 245
CLPY+ +Y CT+S S + VHL L*T + L++ F+S+ +++
Sbjct: 421 CLPYEQIY---CTVSRYSHLLIQ--YILVHLIL*TFK*IQKALSVWFLSFTILD 275
>TC231620
Length = 600
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 2/60 (3%)
Frame = +2
Query: 182 ILCYRN-SLYKCLPYDSVYTMN-CTLSCLSTCAKSSFFSKVHLHL*TLHCLVSHLNILFI 239
+LCY + L CL +Y + CT++ CA++SFFS +LHC V + ++F+
Sbjct: 326 LLCYGSIELGNCL*DIYIYCYSLCTITRHWKCAENSFFSSP-----SLHCRVIIVLLIFV 490
>TC233021
Length = 271
Score = 28.1 bits (61), Expect = 6.1
Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 1/42 (2%)
Frame = -2
Query: 284 YRCNSIYSFWFASEC*SGGV-FMKIPARMIIQSCFPVKFCLN 324
Y C + W ++C S + F+ P MIIQ+C ++ C++
Sbjct: 183 YGCLYLSEQW*LTKCTSSNIRFLLQPVSMIIQTCKTLQICIS 58
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.357 0.157 0.562
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,349,906
Number of Sequences: 63676
Number of extensions: 360157
Number of successful extensions: 4983
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4982
length of query: 346
length of database: 12,639,632
effective HSP length: 98
effective length of query: 248
effective length of database: 6,399,384
effective search space: 1587047232
effective search space used: 1587047232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126782.17