BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.15 + phase: 0
(1155 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP005379 ORF (334 AA) 250 2e-66
CF922321 195 1e-49
TC233500 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable... 160 3e-39
CF922798 135 8e-32
TC233466 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable... 69 7e-18
TC212179 52 1e-06
BF424817 46 8e-05
BE440417 40 0.006
TC234090 38 0.022
BI425208 36 0.11
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 33 0.94
TC213422 similar to UP|TIR3_YEAST (P40552) Cell wall protein TIR... 32 1.6
TC219184 32 1.6
BU926431 32 2.1
TC206556 weakly similar to UP|O60264 (O60264) HSNF2H (SWI/SNF-re... 31 3.6
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 31 3.6
TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protei... 31 3.6
TC207416 similar to UP|O49349 (O49349) Transcription factor IIA ... 30 4.7
TC226467 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 30 6.1
AW277529 30 6.1
>NP005379 ORF (334 AA)
Length = 1002
Score = 250 bits (639), Expect = 2e-66
Identities = 134/338 (39%), Positives = 199/338 (58%), Gaps = 12/338 (3%)
Frame = +1
Query: 200 DDGMDDITKMLKAVTPFKDNLPMNYHAAKRLVMKLGLSVKKIDCCRNGCMLFYDNEFGIN 259
D + +++ + P + LP +Y+ AK+++ +G+ +KI C N C+L Y +EF
Sbjct: 13 DKSFTSLLQIVHDLLPQDNTLPKSYYQAKKILCPMGMEYQKIHACPNDCIL-YRHEFE-- 183
Query: 260 DGPLEECKFCQSPRYGI----------SKQKRVAVKSMFYLPIIPRLQRLFASMKTASQM 309
+ +C C + RY + + +K K ++YLPIIPR +RLFA+ A +
Sbjct: 184 --EMSKCPRCGASRYKVKDDEDCSSDENSKKGPPAKVLWYLPIIPRFKRLFANEDDAKDL 357
Query: 310 TWHHSNGIS-GVMRHPSDGEAWKHFDRVHPDFAADPRNVRLGLCSDGFQPYVQSSAKPYS 368
TWH + S G++RHP+D WK D ++P+F + RN+RLGL SDG PY S + +S
Sbjct: 358 TWHANGRKSDGMVRHPADCSQWKKIDSLYPNFGKEARNLRLGLASDGMNPYGNLSTQ-HS 534
Query: 369 CWPIIVTPYNLPPEMCMTKPYLFLSCIVPGPDNPKAGIDVFLQPLIDDLKRLW-VGELTY 427
WP+++ YN PP +CM + Y+ LS ++ GP P IDV+L PLI+DL++LW G L +
Sbjct: 535 SWPVLLVIYNFPPWLCMKRKYMMLSMMISGPRQPGNDIDVYLSPLIEDLRKLWDEGVLVF 714
Query: 428 DISRKQNFKLRAALMWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFD 487
D RK+ F++RA L TINDFPAYG LSG+S G ACP C E+T L+ G K+ +
Sbjct: 715 DGFRKETFQMRAMLFCTINDFPAYGNLSGYSVKGHLACPICEEDTSYIQLKHGRKTV-YT 891
Query: 488 CHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEV 525
HR FL +HP+RRLK F + + P +T E+V
Sbjct: 892 RHRVFLKAHHPYRRLKKAFNGSQEHEIRRTP-LTGEQV 1002
>CF922321
Length = 742
Score = 195 bits (495), Expect = 1e-49
Identities = 105/240 (43%), Positives = 145/240 (59%), Gaps = 2/240 (0%)
Frame = -1
Query: 292 IIPRLQRLFASMKTASQMTWH-HSNGISGVMRHPSDGEAWKHFDRVHPDFAADPRNVRLG 350
IIPRL+RLFA+ A +TWH + G++R + WK DR++ D + N+RLG
Sbjct: 742 IIPRLKRLFANGDDAKDLTWHANGRNCDGMIRRLAVSSQWKKIDRLYLDLGKEASNLRLG 563
Query: 351 LCSDGFQPYVQSSAKPYSCWPIIVTPYNLPPEMCMTKPYLFLSCIVPGPDNPKAGIDVFL 410
L SDG PY SS+ +S WP+++ YNLPP +CM + Y+ LS ++ P P IDV+L
Sbjct: 562 LASDGMNPY-GSSST*HSSWPVLLVIYNLPPWLCMKRKYMMLSMMISNPRQPGNDIDVYL 386
Query: 411 QPLIDDLKRLW-VGELTYDISRKQNFKLRAALMWTINDFPAYGMLSGWSTHGRFACPHCM 469
LI+DL +LW G L ++ + F +RA L TINDFPAYG LSG++ G +CP C
Sbjct: 385 SSLIEDLTKLWDEGFLAFNGFWNETFPMRAMLFCTINDFPAYGNLSGYNVKGHHSCPICE 206
Query: 470 ENTKAFTLESGGKSSWFDCHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEVWTRV 529
ENT L+ G K+ + HR FL NHP+RRLK F + + P P +T+EEV+ RV
Sbjct: 205 ENTSYIQLKHGRKTV-YSRHRRFLTPNHPYRRLKKAFNGSQGHDIVPIP-LTAEEVYQRV 32
>TC233500 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable element
(Fragment), partial (65%)
Length = 1033
Score = 160 bits (405), Expect = 3e-39
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
Frame = +2
Query: 309 MTWH-HSNGISGVMRHPSDGEAWKHFDRVHPDFAADPRNVRLGLCSDGFQPYVQSSAKPY 367
+TWH + ++RH +D WK DR++PDF + +N+ LGL +D PY S + +
Sbjct: 8 LTWHANGRNCDRMLRHLADSLQWKKIDRLYPDFGKETKNLTLGLATDAMNPYGCLSTQ-H 184
Query: 368 SCWPIIVTPYNLPPEMCMTKPYLFLSCIVPGPDNPKAGIDVFLQPLIDDLKRL-WVGELT 426
+ WP+++ YNLP +CM + Y+ LS ++ GP P I+V+L PLI+DL +L G L
Sbjct: 185 NSWPVLLVIYNLPHWLCMKRKYMMLSMMITGPRQPGNDINVYLNPLIEDLTKL*DEGVLV 364
Query: 427 YDISRKQNFKLRAALMWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWF 486
+D R + F L A L TINDFP Y LSG+S G ACP C E+T ++ + G+ + +
Sbjct: 365 FDGFRNETFNLCAMLFCTINDFPTYENLSGYSVKGHRACPICEEDT-SYIQQKHGRKTVY 541
Query: 487 DCHRPFLPHNHPFRRLKNGFKK 508
HR FL +HP+RRLK F +
Sbjct: 542 TRHRRFLKPHHPYRRLKKAFNE 607
>CF922798
Length = 617
Score = 135 bits (341), Expect = 8e-32
Identities = 76/174 (43%), Positives = 103/174 (58%), Gaps = 1/174 (0%)
Frame = -2
Query: 334 DRVHPDFAADPRNVRLGLCSDGFQPYVQSSAKPYSCWPIIVTPYNLPPEMCMTKPYLFLS 393
D ++ DF+ + N+RLGL +DG PY S + YS W +++ YNL P +CM K Y+ LS
Sbjct: 613 DHLYLDFSKEAINLRLGLATDGMNPYGSLSTQ-YSLWSVLLVIYNLSPWLCMNKKYMMLS 437
Query: 394 CIVPGPDNPKAGIDVFLQPLIDDLKRLWVGE-LTYDISRKQNFKLRAALMWTINDFPAYG 452
++ P P IDV+L PLI+DL L E L +D + + F L A L TINDFPAYG
Sbjct: 436 MMILSPRQPGNDIDVYLSPLIEDLTML*DEEVLVFDGFQNETFHLCAMLFCTINDFPAYG 257
Query: 453 MLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFDCHRPFLPHNHPFRRLKNGF 506
LSG+S ACP C E+T L+ G K+ + H+ FL +H +RRLK F
Sbjct: 256 NLSGYSVKSHRACPICEEDTSYIQLKHGRKTI-YTRHQRFLKPHHLYRRLKKEF 98
>TC233466 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable element
(Fragment), partial (37%)
Length = 790
Score = 69.3 bits (168), Expect(2) = 7e-18
Identities = 41/138 (29%), Positives = 72/138 (51%), Gaps = 10/138 (7%)
Frame = +2
Query: 189 LLSHKSNYLNPDDGMDDITKMLKAVTPFKDNLPMNYHAAKRLVMKLGLSVKKIDCCRNGC 248
L++ K+ Y D + +++ V P ++ LP +Y+ AK+++ + + KI C N C
Sbjct: 395 LVNMKARYGCSDKSFSSLLQVVHDVLPEENTLPKSYYQAKKILCSMDMEY*KIHACPNDC 574
Query: 249 MLFYDNEFGINDGPLEECKFCQSPRYGI----------SKQKRVAVKSMFYLPIIPRLQR 298
+L Y +EF + +C C RY + + +K K ++YLPI+P+ +R
Sbjct: 575 IL-YRHEF----EEMSKCPRCGVSRYKVKDDEECSSDENSKKGPLAKVLWYLPIVPKFKR 739
Query: 299 LFASMKTASQMTWHHSNG 316
LFA+ A +TW H+NG
Sbjct: 740 LFANGDDAKDLTW-HANG 790
Score = 40.8 bits (94), Expect(2) = 7e-18
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 6/169 (3%)
Frame = +3
Query: 28 EGVDGFISWAWEQEICRDEGGIRCPCLKC---RCRHIITDPGDVKKHLKKVGFMPNYWVW 84
EGV+ F+ A E+ + G CPC+ C R + + D++ HL NY W
Sbjct: 9 EGVEQFLQLASERSRPDENGKFFCPCINCLNGRRQKV----NDIRDHLLCDEIKRNYTTW 176
Query: 85 TYNGEMFQNFGAGVNAQASTSHGGTNVETNVEYNEDVNTDQFNMMDDMVADALGVELSYG 144
++GEM A G + +VE + ++DM+ D LG
Sbjct: 177 IWHGEM-----------ADMQSGPQSEPFDVEMRD--------RLEDMIRD-LG------ 278
Query: 145 EDVEDDEEEQPPNEKAQRFYRLLSESNTPLYEGSSH--SKLSMC-VWLL 190
+E A + L +S TPLY G ++ + LS C WL+
Sbjct: 279 -------QESFQQAHAPMYDTLQIDSKTPLYPGCNNLLTLLSWC*AWLI 404
>TC212179
Length = 764
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/79 (32%), Positives = 46/79 (57%), Gaps = 1/79 (1%)
Frame = +1
Query: 13 DRTFPGRTGLKPQFVEGVDGFISWAWEQEICRDEGGIRCPCLKC-RCRHIITDPGDVKKH 71
DR++ ++ + P++ EGV+ F+ +A ++ ++G CPC+ C R I D D+++H
Sbjct: 34 DRSWMNQSRISPEYEEGVEQFLQFASQRGQPDEDGKYYCPCINCLNGRRQILD--DIREH 207
Query: 72 LKKVGFMPNYWVWTYNGEM 90
L G NY W ++GEM
Sbjct: 208 LLCDGIKRNYTTWIWHGEM 264
>BF424817
Length = 413
Score = 46.2 bits (108), Expect = 8e-05
Identities = 48/166 (28%), Positives = 69/166 (40%), Gaps = 7/166 (4%)
Frame = +2
Query: 975 FYGVIKHIYELSYNDNKVVLFYCDWFDPSPRWTKINKLCNTVDI---RVDKKYKEY--DP 1029
++G I I+EL+Y V +F C+W D N +T DI VD K Y DP
Sbjct: 35 YFGFIDEIWELNYVKFTVCVFKCEWVDS-------NTGVHTDDIGFMLVDLKKLGYHNDP 193
Query: 1030 FIMAHNVRQVYYVPYPPTLPRKRGWSVAIKTKPRGRIETEERNEEVAYQADDMTHVNEII 1089
FIMA RQV+YV P W V ++ K G I
Sbjct: 194 FIMAEQARQVFYVQD----PCDERWCVVLQGKTIG------------------------I 289
Query: 1090 EVDQVTSWQDSQVE--GDQVDPSILEMRNEVEDENEDVVDDNNEGD 1133
V+ S+ D+ V Q+ P+++ E+E +DV + N+ D
Sbjct: 290 NVEDDDSYMDTYVSPLTAQITPNVVG-----EEEADDVHANRNDHD 412
>BE440417
Length = 192
Score = 40.0 bits (92), Expect = 0.006
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 482 KSSWFDCHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEV 525
K +FD H FLP NH +RR K FKK PPP ++S +V
Sbjct: 35 KICYFDFHHQFLPLNHAYRRNKKSFKKGWVETSPPPPCLSSLDV 166
>TC234090
Length = 420
Score = 38.1 bits (87), Expect = 0.022
Identities = 35/112 (31%), Positives = 56/112 (49%), Gaps = 5/112 (4%)
Frame = -1
Query: 486 FDCHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEVWTRVCDYPKVTDYGRAVP-- 543
F CH FLP + R KN KK + + ++ EE+W R + YG V
Sbjct: 390 FYCHYHFLPR*CSWERKKN--KKLRDIVLRSLSPLSGEEIWPRFSQLSFI--YGNFVRSY 223
Query: 544 IPRYGVDHHWTKRSIFWDLPYWK-DNLLRHNLDVMHIEKNVFDN--IFNTVM 592
+ V+ +RS+F +L + + NLL N++VMHI++ VF+ +F +M
Sbjct: 222 LGIRMVETIIGQRSVF*NLLH*RMHNLLHDNINVMHIKRIVFNI*WVFRAIM 67
>BI425208
Length = 413
Score = 35.8 bits (81), Expect = 0.11
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Frame = -3
Query: 25 QFVEGVDGFISWAWEQEICRDEGGIRCPCLKCRCRHIITDPGD-VKKHLKKVGFMPNYWV 83
++++G++ F+ +++ +++ IRCPC CRC I D V L K F NY
Sbjct: 189 EYLKGINDFLEFSFSYS--KNKNTIRCPC--CRCNAIYYKTRDEVIGDLLKSRFQQNYEH 22
Query: 84 WTYNGE 89
W +GE
Sbjct: 21 WESHGE 4
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 32.7 bits (73), Expect = 0.94
Identities = 19/49 (38%), Positives = 31/49 (62%), Gaps = 5/49 (10%)
Frame = +2
Query: 1103 EGDQVDPSILEMRNEVED-ENEDVVDDNNEGDHQDNQVDD----GDVDE 1146
E D+ S+ E+ ++ ED E+E+ DD++EGD D++ DD GD D+
Sbjct: 284 EDDEEYESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDD 430
>TC213422 similar to UP|TIR3_YEAST (P40552) Cell wall protein TIR3 precursor,
partial (9%)
Length = 651
Score = 32.0 bits (71), Expect = 1.6
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Frame = +2
Query: 107 GGTNVETNVEYNEDVNTDQFNMMDDMVADALGVELSYG-EDVEDDEEEQPPNEKAQRFYR 165
G + E ++ Y E+ T M DD +A G+ + G ED + DEE P+ R +
Sbjct: 236 GMEDEEADINYREEPQTQ---MNDDAEENAQGLLAAAGLEDSDADEEAAAPSSSIARRRQ 406
Query: 166 LLSES----------NTPLYEGSSHSKLSMCVWLLSHKSNYLNPDDGMDD 205
LSES ++P+ + S+ +LS K+ N DDG D+
Sbjct: 407 ALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRDGDKT---NGDDGNDE 547
>TC219184
Length = 951
Score = 32.0 bits (71), Expect = 1.6
Identities = 24/66 (36%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = -3
Query: 932 CANEFHTYFVNGYKFH---THSWTEGKKTINSGVYVKGVTDGGED--DFYGVIK-HIYEL 985
C N FH YF N F + S+++GK + G + VT+GG F+ +I IY L
Sbjct: 385 CVNLFHHYFSNLNHFQFA*SASFSKGKALVGRGSNL*VVTEGGSFCLYFFAIISASIYTL 206
Query: 986 SYNDNK 991
S D K
Sbjct: 205 SLFDRK 188
>BU926431
Length = 457
Score = 31.6 bits (70), Expect = 2.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 1067 ETEERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMR-NEVEDENEDV 1125
E E+ N E AY+ D H E E + V G + E + NEVED+
Sbjct: 75 EEEDDNVEDAYKHDHNEHEEEGNEHESEEKGDKRGVRGGGSEQEEDENKSNEVEDQRGGG 254
Query: 1126 VDDNNEGDHQDNQVDDGDVDEY 1147
D+ +E D + + VD +E+
Sbjct: 255 DDEIDENDQEQSAVDTDHDEEF 320
>TC206556 weakly similar to UP|O60264 (O60264) HSNF2H (SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
a5), partial (12%)
Length = 1129
Score = 30.8 bits (68), Expect = 3.6
Identities = 33/146 (22%), Positives = 57/146 (38%), Gaps = 8/146 (5%)
Frame = +1
Query: 891 EGSTVGSIHEYFPAWFKQRVYNAEPTDEVIRLRQLSQGPLQCANEFHTYFVNGYKFHTHS 950
EG T + Y FK+R D +I+ + + + +E + +
Sbjct: 109 EGKTEEEVERYAKV-FKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNP 285
Query: 951 WTEGKKTINSGVYVKGVTDGGEDDFYGVIKHIYELSYND--------NKVVLFYCDWFDP 1002
W E K KG E D + +I +++L Y + LF DWF
Sbjct: 286 WLELKIQYGQN---KGKLYNEECDRF-MICMVHKLGYGNWDELKAAFRTSPLFRFDWFVK 453
Query: 1003 SPRWTKINKLCNTVDIRVDKKYKEYD 1028
S ++ + C+T+ V+K+ +EYD
Sbjct: 454 SRTTQELARRCDTLIRLVEKENQEYD 531
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 30.8 bits (68), Expect = 3.6
Identities = 26/88 (29%), Positives = 40/88 (44%), Gaps = 9/88 (10%)
Frame = +3
Query: 1068 TEERNEEVA--YQADDMTHVNE-----IIEVDQVTSWQDSQVEGDQVDPSILEMRNEVED 1120
T E N++ + DD +VN+ E D+ S D E D D +D
Sbjct: 252 TSEENKDASDTEDDDDDDNVNDGEDDNDDEEDEDFSGDDGGEEADSDDDPEANGGGGSDD 431
Query: 1121 EN--EDVVDDNNEGDHQDNQVDDGDVDE 1146
++ +D DDN+E D ++ D+GD DE
Sbjct: 432 DDGDDDEDDDNDEDDGDEDDEDEGDDDE 515
Score = 29.6 bits (65), Expect = 8.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 1100 SQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYN 1148
S E D D ++ N+ ED+N+D D++ GD + D D E N
Sbjct: 276 SDTEDDDDDDNV----NDGEDDNDDEEDEDFSGDDGGEEADSDDDPEAN 410
>TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1,
partial (18%)
Length = 451
Score = 30.8 bits (68), Expect = 3.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 1099 DSQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGD---HQDNQVDDGD 1143
+ +VE ++V+ + E E EDE ++ ++ ++ D HQ Q D+ D
Sbjct: 203 EEEVEEEEVEEEVEEEEEEEEDEEDEEEEEEDQKDQYQHQQQQQDEDD 346
>TC207416 similar to UP|O49349 (O49349) Transcription factor IIA large subunit
(TFIIA-L1), partial (62%)
Length = 1724
Score = 30.4 bits (67), Expect = 4.7
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 1075 VAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSI------LEMRNEVEDENEDVVDD 1128
+ Y DD+ I +V S +D + P + L ++NEV ++ DD
Sbjct: 1002 IPYDDDDVLSTPNIYNYGEVFS-EDYNISNTPAPPEVPASTPALLVQNEVGND----FDD 1166
Query: 1129 NNEGDHQDNQVDDGDVDEYNYASDNHT 1155
+++ + N+ DD D+D+ D +T
Sbjct: 1167 DDDDEPPLNEEDDDDLDDMEQGEDQNT 1247
>TC226467 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (6%)
Length = 1017
Score = 30.0 bits (66), Expect = 6.1
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = -2
Query: 3 YYEYYRRWMYDRTFPGRTGLKPQFVEGVDGFISWAWEQEICRDEGGIRCPCLKCRCR 59
+Y YYRRW + R+ SW W +CR G C CRCR
Sbjct: 545 WYLYYRRWCQCWWWRNRSW-------------SWCW---LCRCRSGCWCCLCWCRCR 423
>AW277529
Length = 438
Score = 30.0 bits (66), Expect = 6.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 1119 EDENEDVVDDNNEGDHQDNQVDDGDVDEYN 1148
ED D+V N+GD N+V+D D +Y+
Sbjct: 230 EDTEVDIVSLTNKGDFASNKVEDPDATDYS 319
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,375,761
Number of Sequences: 63676
Number of extensions: 999610
Number of successful extensions: 4785
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 4655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4759
length of query: 1155
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1047
effective length of database: 5,762,624
effective search space: 6033467328
effective search space used: 6033467328
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC126782.15