BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.12 + phase: 0
(116 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BU927182 30 0.16
AW832328 30 0.22
TC230962 weakly similar to UP|Q9MAH6 (Q9MAH6) F12M16.15, partial... 30 0.22
TC226150 28 0.48
BE209742 27 1.1
TC208026 similar to UP|Q6Z841 (Q6Z841) Pollen Ole e 1 allergen a... 27 1.1
TC226152 27 1.4
TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase... 27 1.4
TC226151 27 1.4
TC229452 weakly similar to UP|Q8YU62 (Q8YU62) Alr2492 protein, p... 27 1.8
BU544677 weakly similar to SP|Q38840|AG17_ Agamous-like MADS box... 27 1.8
TC208211 weakly similar to UP|Q9FJ18 (Q9FJ18) Gb|AAF31026.1, par... 26 2.4
TC218887 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n... 26 2.4
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 26 2.4
TC208048 similar to UP|CRT3_ARATH (O04153) Calreticulin 3 precur... 26 2.4
TC223864 weakly similar to UP|Q9LIG9 (Q9LIG9) Cytochrome P450-li... 26 2.4
AW185659 26 2.4
TC222319 UP|Q39833 (Q39833) Alfa-carboxyltransferase precursor (... 26 3.1
TC210176 26 3.1
TC216637 homologue to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Frag... 26 3.1
>BU927182
Length = 447
Score = 30.0 bits (66), Expect = 0.16
Identities = 21/93 (22%), Positives = 46/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 11 RSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEY 70
+ +R + V R +E K + ++ + E EKE + + KE+E+E +
Sbjct: 117 KDRREREKEVEKERREREKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEVEKDRRE 296
Query: 71 TKVQQEKNRLKKMKMYLKLSSE-EHLDDRKKEH 102
+ + EK+R ++ K +K + E+ +R+++H
Sbjct: 297 KEKEVEKDRREREKEVVKDRKKIENDKEREQQH 395
>AW832328
Length = 421
Score = 29.6 bits (65), Expect = 0.22
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1
Query: 11 RSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKE 52
+SKR K+ G+S GR+ +KKG +SK +G ++ EK+
Sbjct: 355 QSKRKQKEKKGNSQSKSGRKQKEKKGNSQSK--SGRKQKEKK 236
>TC230962 weakly similar to UP|Q9MAH6 (Q9MAH6) F12M16.15, partial (35%)
Length = 882
Score = 29.6 bits (65), Expect = 0.22
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +3
Query: 32 AKKKGIKKSKDVAGLEEVEKEWVQ--FKEIK-----EQEIEHLKEYTKVQQEKNRLKKMK 84
+KKKG +K VAG + + + W + K K EQE++ Y K+Q+E L++++
Sbjct: 423 SKKKGKEKLMAVAGAKNIIQSWKESIAKAAKKGGSGEQELD-WDSYEKIQEEMVHLRQLQ 599
Query: 85 MYLKLSSEEHLDDRKKE 101
+ + E+ + K E
Sbjct: 600 RTTEKAKEKEMARVKAE 650
>TC226150
Length = 1275
Score = 28.5 bits (62), Expect = 0.48
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 37 IKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMY 86
IK+ ++ E E+K QE++HLK+ QE+ R ++ Y
Sbjct: 746 IKEKNSFKNAFRIQHERFADYEVKNQELQHLKQLVSQYQEQIRTLEVNNY 895
>BE209742
Length = 432
Score = 27.3 bits (59), Expect = 1.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 4 NVGSGSSRSKRSHKDSVGSSARPMGREAAKKK 35
+VG+ ++ + H+D GS P+GR A+ +
Sbjct: 66 DVGANAASERGPHRDDAGSGEGPIGRRHARPR 161
>TC208026 similar to UP|Q6Z841 (Q6Z841) Pollen Ole e 1 allergen and extensin
family protein-like, partial (78%)
Length = 641
Score = 27.3 bits (59), Expect = 1.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 60 KEQEIEHLKEYTKVQQEKNRLKKMK 84
KEQ+ +HL+EY QEKN K+ K
Sbjct: 187 KEQQPQHLQEYGLQVQEKNPHKRHK 113
>TC226152
Length = 588
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 37 IKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNR 79
IK+ ++ E E+K QE++HLK+ QE+ R
Sbjct: 68 IKEKNSFKNAFRIQHERFADYEVKNQELQHLKQLVSQYQEQIR 196
>TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase M4E13.20 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(13%)
Length = 944
Score = 26.9 bits (58), Expect = 1.4
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 9 SSRSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEK-EWVQFKEIKEQEIEHL 67
+ + K+ HKD V S+ + + KKK K + A E+ + K ++ +H
Sbjct: 557 TEKKKKKHKDKVEDSSPELDKSEKKKKKKKDKEAAAATAEISNGKEDDSNADKSEKKKHK 736
Query: 68 KEYTKVQQEKNR 79
K+ K E+ R
Sbjct: 737 KKKNKDADEE*R 772
>TC226151
Length = 864
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 37 IKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMY 86
IK+ ++ E E+K QE++HLK+ QE+ + ++ Y
Sbjct: 407 IKEKNSFKNAFRIQHERSADYEVKNQELQHLKQLVSQYQEQIKTLEVNNY 556
>TC229452 weakly similar to UP|Q8YU62 (Q8YU62) Alr2492 protein, partial (25%)
Length = 650
Score = 26.6 bits (57), Expect = 1.8
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = -2
Query: 11 RSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEW 53
R +R + G+SAR GR A++ G + + G+EE W
Sbjct: 562 RGRRRRRRWRGASAR*GGRRASRSSGEARGQRRRGIEERVYSW 434
>BU544677 weakly similar to SP|Q38840|AG17_ Agamous-like MADS box protein
AGL17. [Mouse-ear cress] {Arabidopsis thaliana}, partial
(38%)
Length = 653
Score = 26.6 bits (57), Expect = 1.8
Identities = 14/61 (22%), Positives = 32/61 (51%)
Frame = -1
Query: 35 KGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEH 94
KG+ KD E+E+ + I ++ +E ++ ++Q+E L+K + ++EE+
Sbjct: 578 KGVXMKKDQILTNEIEELRQKGNLIHQENVELYQKMEQIQKENAELQKKVYEARSTNEEN 399
Query: 95 L 95
+
Sbjct: 398 V 396
>TC208211 weakly similar to UP|Q9FJ18 (Q9FJ18) Gb|AAF31026.1, partial (9%)
Length = 995
Score = 26.2 bits (56), Expect = 2.4
Identities = 8/37 (21%), Positives = 20/37 (53%)
Frame = +3
Query: 34 KKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEY 70
KKG+ +S+ V+ L + W++ ++ + + K +
Sbjct: 132 KKGVSESQQVSSLLQAADNWLRLVQVNHPDFQFFKSH 242
>TC218887 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
partial (13%)
Length = 559
Score = 26.2 bits (56), Expect = 2.4
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 13 KRSHKDSVGSSARPM---GREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKE 69
K S K ++ A P ++AKK G ++++D E+EK+ K+ E+ + K+
Sbjct: 151 KSSKKSAIKVDAAPAVVPPSKSAKKGGKRQAQD-----EIEKQVSAKKQKIEEVAQKQKK 315
Query: 70 YTKVQQEK 77
KVQ++K
Sbjct: 316 EAKVQKKK 339
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 26.2 bits (56), Expect = 2.4
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 33 KKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQ--QEKNRLKKMKMYLKLS 90
K+KG ++ ++ EKE + K+ K++E + LKE K ++ KK K K
Sbjct: 333 KEKGDGDGEEKKEKKDKEKEKKKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKKDKKEK 512
Query: 91 SEEHLDDRK 99
++H ++K
Sbjct: 513 EKDHKKEKK 539
>TC208048 similar to UP|CRT3_ARATH (O04153) Calreticulin 3 precursor, partial
(22%)
Length = 601
Score = 26.2 bits (56), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 27 MGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKE 61
+ E KKK +KK K GL + + Q K +KE
Sbjct: 136 LATERLKKKLLKKQKKKEGLRKTRRHEEQEKRVKE 240
>TC223864 weakly similar to UP|Q9LIG9 (Q9LIG9) Cytochrome P450-like protein,
partial (5%)
Length = 561
Score = 26.2 bits (56), Expect = 2.4
Identities = 13/49 (26%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = +2
Query: 58 EIKEQEIE-HLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
E+ E +I+ +K + ++EKN++ + + + + +E D+KK VK
Sbjct: 176 EVCEDQIKMRVKREQERKEEKNKIDEKRKHERREKKEKSGDKKKSETVK 322
>AW185659
Length = 451
Score = 26.2 bits (56), Expect = 2.4
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = -1
Query: 34 KKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLK 88
KK KKSK A ++ V +E VQ K ++E E +E K +++ RL+K K +K
Sbjct: 328 KKNKKKSKSKA*IKTV-RENVQLKSEIKEERER*EETKK--KDRRRLRK*KTKMK 173
>TC222319 UP|Q39833 (Q39833) Alfa-carboxyltransferase precursor (Carboxyl
transferase alpha subunit) , complete
Length = 2588
Score = 25.8 bits (55), Expect = 3.1
Identities = 15/56 (26%), Positives = 28/56 (49%)
Frame = +2
Query: 50 EKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
+ E V FK+ E+++++ K+++ LK SS LDD K+ +V+
Sbjct: 2006 DNEAVTFKQELEKKVDNALSNPKIRETFEALKAEIKGAGASSASDLDDELKKKIVE 2173
>TC210176
Length = 757
Score = 25.8 bits (55), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = +1
Query: 61 EQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVKHIWTKFGM 113
EQE + + + TK K + K M Y L + DDR E + +WTK M
Sbjct: 16 EQEWKRVIQVTKWMLSKGQGKTMGSYFTLLNALVEDDRLDE--AEELWTKLLM 168
>TC216637 homologue to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragment),
partial (8%)
Length = 450
Score = 25.8 bits (55), Expect = 3.1
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = +3
Query: 8 GSSRSKRSHKDSVGSSARPMGREAAKKKGIKKSKD 42
G+ + K++ KDS G A G E+ KKK K KD
Sbjct: 168 GTVKKKKNKKDSNG-EALEAGGESKKKKKKSKKKD 269
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.127 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,362,109
Number of Sequences: 63676
Number of extensions: 43220
Number of successful extensions: 302
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of query: 116
length of database: 12,639,632
effective HSP length: 92
effective length of query: 24
effective length of database: 6,781,440
effective search space: 162754560
effective search space used: 162754560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC126782.12