BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126781.9 + phase: 0
(195 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 191 2e-49
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 148 1e-36
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 146 5e-36
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 143 4e-35
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 128 8e-34
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 130 5e-31
BU548243 120 3e-28
BU764568 101 4e-27
BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis v... 115 2e-26
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 114 2e-26
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 114 4e-26
BU549979 110 3e-25
BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {... 98 3e-21
BG508993 96 8e-21
CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 95 2e-20
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 71 8e-19
BU545438 83 9e-17
BQ273297 62 3e-16
BG840035 weakly similar to GP|9294121|dbj copia-like retrotransp... 81 3e-16
CA935263 54 4e-08
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 191 bits (484), Expect = 2e-49
Identities = 85/163 (52%), Positives = 118/163 (72%)
Frame = +2
Query: 32 KSDLRLHGWCDSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMAN 91
K + +L G+CD+DWA CP+ RRS +G+ V +G + +SWK+KKQ V+RSSAEAEYRSMA
Sbjct: 2 KGNTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAM 181
Query: 92 TTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEVL 151
TCEL W+K L L + M ++CD+QAA+HIA NPVFHERTKHIE+DCHF+R ++L
Sbjct: 182 VTCELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLL 361
Query: 152 KNNILPVYVSTANQPADIFTKALGKPQFEFLLGKLGIRNLHAP 194
I+ ++ + +QP DI TK+L P+ + + KLG +L+AP
Sbjct: 362 SKEIVTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYAP 490
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 148 bits (374), Expect = 1e-36
Identities = 80/185 (43%), Positives = 113/185 (60%)
Frame = +1
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
P+ H R+++++ G GI + SD L G+CD+DWA R+S +G LG
Sbjct: 4162 PKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLG 4341
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
+ ISW +KKQ+ VS S+AEAEY + ++ +L W+K +L V D M ++CD+ +A
Sbjct: 4342 TNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQD-VMTLYCDNMSA 4518
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+I+KNPV H RTKHI++ H++R+ V I +V T Q ADIFTKAL QFE L
Sbjct: 4519 INISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLR 4698
Query: 184 GKLGI 188
GKLGI
Sbjct: 4699 GKLGI 4713
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 146 bits (369), Expect = 5e-36
Identities = 79/185 (42%), Positives = 114/185 (60%)
Frame = +1
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
P+ H R+++++ G GI + S+ L G+CD+DWA R+S +G LG
Sbjct: 4159 PKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLG 4338
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
++ ISW +KKQ+ VS S+AEAEY + ++ +L W+K +L V D M ++CD+ +A
Sbjct: 4339 NNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQD-VMTLYCDNMSA 4515
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+I+KNPV H RTKHI++ H++R+ V I +V T Q ADIFTKAL QFE L
Sbjct: 4516 INISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLR 4695
Query: 184 GKLGI 188
GKLGI
Sbjct: 4696 GKLGI 4710
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 143 bits (361), Expect = 4e-35
Identities = 82/190 (43%), Positives = 126/190 (66%), Gaps = 6/190 (3%)
Frame = +3
Query: 11 AALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLGDSPISWK 70
AA RV+++LKG P +G+ F +S +++ G+ D+DWA+C + +S+T + LG S ISWK
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 71 TKKQHTVSR--SSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIH-IA 127
KKQ+TVSR SS+EA+YR++ +TTCEL+WL +L +L V +I+CD+Q+A+ +
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHVT-----LIYCDNQSALQ*LP 362
Query: 128 KNPVFHERTKHIEVDCHFVRNEV---LKNNILPVYVSTANQPADIFTKALGKPQFEFLLG 184
++H + +E+DCH VR + L + +LP VS++NQ ADIFTKAL F L
Sbjct: 363 IKVIYHGQ---LEIDCHIVREKTQQGLMHCLLP--VSSSNQLADIFTKALSPKLFSSNLS 527
Query: 185 KLGIRNLHAP 194
KLG+ ++ P
Sbjct: 528 KLGLSDIFLP 557
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 128 bits (321), Expect(2) = 8e-34
Identities = 58/109 (53%), Positives = 79/109 (72%)
Frame = +2
Query: 42 DSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKG 101
D++WA P+ R S G+ V +G++ + WK+ K + V+RSSAEAEY++M TCEL W+K
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 102 ILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEV 150
+L L + M + CD+QAA+HIA NPVFHERTKHIE+DCHFVR +V
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 32.3 bits (72), Expect(2) = 8e-34
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +3
Query: 159 YVSTANQPADIFTKALGKPQFEFLLGKLGIRNLHAPT 195
+VS+ +Q A+IFTK+L P+ + + KLG L+A T
Sbjct: 360 FVSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAST 470
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 130 bits (326), Expect = 5e-31
Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Frame = +1
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLR---LHGWCDSDWASCPLTRRSVTG 57
M +PR H +AA RV+R +KG G G+ F K+ L G+ DSDW P +S G
Sbjct: 106 MKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGG 285
Query: 58 WIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIH 117
++ D+P++ +KKQ ++ S+ EAEY + + C+ W+ +L L + KP+ +
Sbjct: 286 YLFMYNDAPVA*SSKKQDVIALSTCEAEYVAASLGACQAVWMMNLLEELKLRERKPVNLL 465
Query: 118 CDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKP 177
D+++AI++AK+P H R+KHIE+ H++R++V K N+ Y Q AD+ TK +
Sbjct: 466 IDNKSAINLAKHPTLHGRSKHIELRFHYIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVS 645
Query: 178 QFEFLLGKLGIRNL 191
+F+ + +L + NL
Sbjct: 646 RFKQICSEL-VNNL 684
>BU548243
Length = 599
Score = 120 bits (302), Expect = 3e-28
Identities = 62/149 (41%), Positives = 91/149 (60%)
Frame = -1
Query: 41 CDSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLK 100
CD+ WAS RS G + LG + ISW ++KQ ++SS EAEYRS+A T+ EL W++
Sbjct: 590 CDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQ 411
Query: 101 GILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYV 160
+L L + P+I+ CD+++A+ IA N VFH RTKH+E+D FV +VL + ++
Sbjct: 410 ALLMELQIPFTPPVIL-CDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHI 234
Query: 161 STANQPADIFTKALGKPQFEFLLGKLGIR 189
+Q A I TK L +F FL KL ++
Sbjct: 233 PALDQWAGILTKPLSSARFTFLKSKLTVK 147
>BU764568
Length = 420
Score = 101 bits (252), Expect(2) = 4e-27
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +3
Query: 56 TGWIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMI 115
+G+ V +G + ISWK+KKQ V++SSAEAEYR+MA TCEL WLK +L L D M
Sbjct: 168 SGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMT 347
Query: 116 IHCDSQAAIHIAKNPVFHERTKHI 139
+ CD+QAA+HIA NP+FH RTKHI
Sbjct: 348 LICDNQAALHIASNPIFH*RTKHI 419
Score = 36.6 bits (83), Expect(2) = 4e-27
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTR 52
+N P +HW A +++ K PG+G+ + K ++ G+ D+D P R
Sbjct: 10 LNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDR 165
>BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis vinifera},
partial (21%)
Length = 698
Score = 115 bits (287), Expect = 2e-26
Identities = 53/105 (50%), Positives = 72/105 (68%)
Frame = -2
Query: 70 KTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKN 129
K+KKQ V+ SAE EY SM TCEL W+K L L M ++CD+QAA+HIA N
Sbjct: 697 KSKKQTVVA*XSAEVEY*SMTMVTCELMWIKQXLQELRFCEVVQMKLYCDNQAALHIASN 518
Query: 130 PVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKAL 174
PVFHER KHIE+DCHF+R ++L I+ ++++ +QP +I TK+L
Sbjct: 517 PVFHERAKHIEIDCHFIREKLLSKEIITEFINSNDQPTNILTKSL 383
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 114 bits (286), Expect = 2e-26
Identities = 56/139 (40%), Positives = 86/139 (61%)
Frame = +3
Query: 52 RRSVTGWIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHD 111
R+S TG++ +GD+ +W +KKQ V+ S+ EAEY + + C WL+ +L L + +
Sbjct: 15 RKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMPQE 194
Query: 112 KPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFT 171
+PM I D+++A+ +AKNPVFHE++KHI+ HF+R + K + YV + +Q ADIFT
Sbjct: 195 EPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADIFT 374
Query: 172 KALGKPQFEFLLGKLGIRN 190
K L F L LG+ N
Sbjct: 375 KPLKLETFVKLRSMLGVTN 431
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 114 bits (284), Expect = 4e-26
Identities = 57/125 (45%), Positives = 84/125 (66%)
Frame = -2
Query: 71 TKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNP 130
TK + +RSSA+AEYR+MA CE+ LK IL L + PM ++CD++AAI+I++NP
Sbjct: 426 TKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMKLYCDNKAAINISQNP 247
Query: 131 VFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLLGKLGIRN 190
V H RTKH+E+D F++ +V I ++ + Q ADIFTK L +P FEF + KL + +
Sbjct: 246 VQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLFRPNFEFFVSKLDMLD 67
Query: 191 LHAPT 195
++APT
Sbjct: 66 IYAPT 52
>BU549979
Length = 615
Score = 110 bits (276), Expect = 3e-25
Identities = 57/181 (31%), Positives = 100/181 (54%), Gaps = 2/181 (1%)
Frame = -1
Query: 2 NQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQ 61
+ P +HW+ A +V+R+L+G + + + L + G+ DSD+A C +RRS +G+I
Sbjct: 597 SNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGYIFM 418
Query: 62 LGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVH--DKPMIIHCD 119
L D +SW++ KQ ++ S+ E E+ T WLK +S+L VV +P+ ++CD
Sbjct: 417 LADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKLYCD 238
Query: 120 SQAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQF 179
+ AA+ +AKN R+KHI++ +R V + ++ +V+T D TK + F
Sbjct: 237 NFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTPKNF 58
Query: 180 E 180
+
Sbjct: 57 K 55
>BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {Vitis
vinifera}, partial (20%)
Length = 400
Score = 97.8 bits (242), Expect = 3e-21
Identities = 49/127 (38%), Positives = 74/127 (57%)
Frame = -2
Query: 23 PGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSRSSA 82
PG+G+ + + ++ G+ D DWA + +R + V + ISW +KK + V+RS
Sbjct: 375 PGKGLTYEDREHTQIVGYLDVDWAGSAIHKRPTCRYCVLIRGKLISWNSKKHNVVTRSRT 196
Query: 83 EAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVD 142
+ EYR+MA C+L W K + L M + CD+QAA++IA N F RTKHIE++
Sbjct: 195 KVEYRAMA-LICQLIWFKQLRKQLQFEDTMQMTLICDNQAALYIASNQ-FSTRTKHIEIN 22
Query: 143 CHFVRNE 149
CHFVR +
Sbjct: 21 CHFVREK 1
>BG508993
Length = 374
Score = 96.3 bits (238), Expect = 8e-21
Identities = 46/121 (38%), Positives = 75/121 (61%)
Frame = +1
Query: 20 KGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSR 79
KG G+F+ ++ +L G+CDSD+A R+S TG++ +GD +W +KKQ V+
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 80 SSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHI 139
+ EAEY + + TC WL+ +L L ++ + I+ D+++A +AKN VFHER+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 140 E 140
+
Sbjct: 364 D 366
>CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (13%)
Length = 539
Score = 94.7 bits (234), Expect = 2e-20
Identities = 45/101 (44%), Positives = 70/101 (68%)
Frame = -2
Query: 95 ELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNN 154
++ WLK IL L + PM ++CD++AAI+I++NPV H+RTKH+E+D HF++ +V
Sbjct: 502 QILWLKRILEELQLPMTLPMKLYCDNKAAINISQNPVQHDRTKHVEIDRHFIKEKVDTGL 323
Query: 155 ILPVYVSTANQPADIFTKALGKPQFEFLLGKLGIRNLHAPT 195
I +V ++ Q ADI TK L + FEFL+ KL + +++APT
Sbjct: 322 ICMPFVPSSQQVADILTKGLFRSNFEFLVSKLVMLDIYAPT 200
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 70.9 bits (172), Expect(2) = 8e-19
Identities = 35/85 (41%), Positives = 56/85 (65%)
Frame = +3
Query: 39 GWCDSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKW 98
G+ D+DWA RRS +G+ +G + +S +KKQ V+RSSAEAE+R++A+ CE W
Sbjct: 153 GYTDADWAGSVTDRRSTSGYCTFVGGNLVS*-SKKQSVVARSSAEAEFRALAHGICETLW 329
Query: 99 LKGILSNLGVVHDKPMIIHCDSQAA 123
+K +L L V P+ ++CD+++A
Sbjct: 330 VKKLLQELKVHSSPPIKLYCDNKSA 404
Score = 39.3 bits (90), Expect(2) = 8e-19
Identities = 15/28 (53%), Positives = 23/28 (81%)
Frame = +1
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIF 28
M+ P EH EAA R++R+LKG+PG+G++
Sbjct: 40 MHAPGHEHLEAAFRILRYLKGSPGRGLY 123
>BU545438
Length = 579
Score = 82.8 bits (203), Expect = 9e-17
Identities = 43/104 (41%), Positives = 61/104 (58%)
Frame = -1
Query: 88 SMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVR 147
++A T + L+ IL ++G DKP I+CD+++AI +AKNPV+H RTKHI + HF+R
Sbjct: 576 AVAEATSQAIXLRRILEDMGEKQDKPTKINCDNKSAIAMAKNPVYHNRTKHIAIKYHFIR 397
Query: 148 NEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLLGKLGIRNL 191
I Y T +Q IFTKAL +FE L LG+ +
Sbjct: 396 EAEATKEIKLDYCRTEDQXXXIFTKALXXXRFEELRAMLGVTEI 265
>BQ273297
Length = 420
Score = 62.0 bits (149), Expect(2) = 3e-16
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = +2
Query: 83 EAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVD 142
E E+RSM ++ ++ +LS L V H P+I+ CD+ + + +A N + H RTKH+E+D
Sbjct: 185 ETEHRSMTLIVAKVT*IQSLLSELQVAHSTPLIL-CDNTSTVSLAHNLILHSRTKHMELD 361
Query: 143 CHFVRNEVLKNNILPVYV 160
FVR +VL + V+V
Sbjct: 362 LFFVREKVLNKKLDVVHV 415
Score = 39.7 bits (91), Expect(2) = 3e-16
Identities = 28/66 (42%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
Frame = +1
Query: 19 LKGNPGQGIFFGSKS---DLRLHGWCDSDWASCPLTRRSVTGWIVQLGDSPISWKTKKQH 75
LKG G+ F + S + LH +C SDWAS P RRS LG + I +KKQ
Sbjct: 1 LKGTISWGLHFQATSLQHPIPLHAYCGSDWASDPDYRRSF------LGPNLIC*WSKKQS 162
Query: 76 TVSRSS 81
V+RSS
Sbjct: 163VVARSS 180
>BG840035 weakly similar to GP|9294121|dbj copia-like retrotransposable
element {Arabidopsis thaliana}, partial (3%)
Length = 804
Score = 81.3 bits (199), Expect = 3e-16
Identities = 45/122 (36%), Positives = 64/122 (51%)
Frame = +2
Query: 69 WKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAIHIAK 128
W +KKQ EAEY + + WL+ IL+NL + +P I D+Q I I+
Sbjct: 203 WSSKKQ------DXEAEYVATTTAVNQAIWLRRILANLHMEQKEPTQILVDNQTTISISN 364
Query: 129 NPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLLGKLGI 188
N VFH RTKH ++ F+R + + +Y + +Q ADI TK K +FE L KLG+
Sbjct: 365 NHVFHGRTKHFKIKLFFLRETQREGEVKLIYCRSEDQSADILTKVFPKVRFEVLRNKLGV 544
Query: 189 RN 190
N
Sbjct: 545 CN 550
>CA935263
Length = 446
Score = 54.3 bits (129), Expect = 4e-08
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Frame = +3
Query: 45 WASCPLTRRSVTGWIVQLGDSPISWKTKKQHTVSRSSAEAEY--------RSMANTTCEL 96
W P RS +G+ V +G++ ISW++KKQ+T +RSSAEA MA T
Sbjct: 3 WEGSPSNSRSTSGYCVLIGENLISWRSKKQNTFARSSAEAVLCHDSSCN*NYMAKATSPT 182
Query: 97 KWLKGILSNLGVVHDKPMIIHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNIL 156
+ SN + HC I + T V ++ +VL I
Sbjct: 183 TPIWRYSSN*AYLP*SSYSPHC-------IYSGLP*TDYT*R*TV---ILKQKVLSIEIT 332
Query: 157 PVYVSTANQPADIFTKALGKPQFEFLLGKLG 187
+V++++Q D+FTK+L P+ +++ KLG
Sbjct: 333 TEFVNSSDQLTDMFTKSLKGPRIDYICNKLG 425
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,325,819
Number of Sequences: 63676
Number of extensions: 154443
Number of successful extensions: 767
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of query: 195
length of database: 12,639,632
effective HSP length: 92
effective length of query: 103
effective length of database: 6,781,440
effective search space: 698488320
effective search space used: 698488320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC126781.9