BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126781.3 + phase: 0
(77 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207431 similar to GB|AAO42959.1|28416857|BT004713 At5g57170 {A... 120 1e-28
TC215918 similar to UP|Q9M011 (Q9M011) Light-inducible protein A... 94 1e-20
TC215915 similar to UP|Q9M011 (Q9M011) Light-inducible protein A... 94 1e-20
TC215917 similar to UP|Q9M011 (Q9M011) Light-inducible protein A... 90 2e-19
TC215916 similar to UP|Q9M011 (Q9M011) Light-inducible protein A... 90 2e-19
TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 74 2e-14
TC211381 weakly similar to UP|Q9SCU2 (Q9SCU2) LS1-like protein, ... 66 3e-12
CO981344 63 2e-11
BG509443 similar to PIR|T48186|T481 light-inducible protein ATLS... 63 3e-11
TC218703 weakly similar to GB|AAM60978.1|21536646|AY084404 LS1-l... 62 4e-11
BE347193 58 1e-09
BE807349 similar to GP|8843819|dbj| light-inducible protein ATLS... 51 9e-08
BU761195 28 0.86
TC215492 similar to UP|Q9VHB7 (Q9VHB7) CG8208-PA (LD22928p), par... 26 3.3
TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 26 4.2
TC214702 homologue to UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, co... 26 4.2
TC204953 homologue to UP|PDA1_VIGUN (O04865) Phospholipase D alp... 26 4.2
TC227278 homologue to UP|O48879 (O48879) Ribosomal protein L22 (... 25 7.2
TC214708 homologue to UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, pa... 25 7.2
>TC207431 similar to GB|AAO42959.1|28416857|BT004713 At5g57170 {Arabidopsis
thaliana;} , complete
Length = 586
Score = 120 bits (301), Expect = 1e-28
Identities = 60/75 (80%), Positives = 66/75 (88%)
Frame = +1
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
IL+NGGV IAF GTEEPAAYGELISIGGL P+VN KLSSTIA+I++T L+I SSRFYIKF
Sbjct: 202 ILLNGGVPIAFAGTEEPAAYGELISIGGLGPSVNGKLSSTIAEILETKLYIDSSRFYIKF 381
Query: 63 SDVQPSFVGFNGSTF 77
DVQ SF GFNGSTF
Sbjct: 382 YDVQRSFFGFNGSTF 426
>TC215918 similar to UP|Q9M011 (Q9M011) Light-inducible protein ATLS1,
complete
Length = 875
Score = 94.4 bits (233), Expect = 1e-20
Identities = 44/75 (58%), Positives = 59/75 (78%)
Frame = +3
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
I++ G V IAFGG E+PAAYGEL+SIGGL+P+VN +LS+ IA I++T L + SRF++KF
Sbjct: 291 IVLKGSVPIAFGGNEQPAAYGELVSIGGLNPSVNKELSAAIASILETKLSVPKSRFFLKF 470
Query: 63 SDVQPSFVGFNGSTF 77
D + S G+NGSTF
Sbjct: 471 YDTKGSNFGWNGSTF 515
>TC215915 similar to UP|Q9M011 (Q9M011) Light-inducible protein ATLS1,
complete
Length = 720
Score = 94.4 bits (233), Expect = 1e-20
Identities = 44/75 (58%), Positives = 59/75 (78%)
Frame = +3
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
I++ G V IAFGG E+PAAYGEL+SIGGL+P+VN +LS+ IA I++T L + SRF++KF
Sbjct: 210 IVLKGSVPIAFGGNEQPAAYGELVSIGGLNPSVNKELSAAIASILETKLSVPKSRFFLKF 389
Query: 63 SDVQPSFVGFNGSTF 77
D + S G+NGSTF
Sbjct: 390 YDTKGSNFGWNGSTF 434
>TC215917 similar to UP|Q9M011 (Q9M011) Light-inducible protein ATLS1,
partial (77%)
Length = 531
Score = 90.1 bits (222), Expect = 2e-19
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +3
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
I++ G V I+ GG+E+PAAYGEL+SIGGL P VN KLS+ IA I++ L + SRFY+KF
Sbjct: 45 IVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNEKLSAGIASILENKLSVPKSRFYLKF 224
Query: 63 SDVQPSFVGFNGSTF 77
D + S G+NGSTF
Sbjct: 225 YDTKGSNFGWNGSTF 269
>TC215916 similar to UP|Q9M011 (Q9M011) Light-inducible protein ATLS1,
complete
Length = 630
Score = 90.1 bits (222), Expect = 2e-19
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +2
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
I++ G V I+ GG+E+PAAYGEL+SIGGL P VN KLS+ IA I++ L + SRFY+KF
Sbjct: 161 IVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKF 340
Query: 63 SDVQPSFVGFNGSTF 77
D + S G+NGSTF
Sbjct: 341 YDTKGSNFGWNGSTF 385
>TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (53%)
Length = 1569
Score = 73.6 bits (179), Expect = 2e-14
Identities = 34/73 (46%), Positives = 49/73 (66%)
Frame = +2
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
+ + G FGGTEEPAAYGEL+S+G L+P +N KLS+ IA +++T L + SRF++KF
Sbjct: 1163 VSLEGSTTTCFGGTEEPAAYGELVSMGALNPELNKKLSAGIACVLETKLLVPKSRFFLKF 1342
Query: 63 SDVQPSFVGFNGS 75
+ + NGS
Sbjct: 1343 YNTEGYNCALNGS 1381
>TC211381 weakly similar to UP|Q9SCU2 (Q9SCU2) LS1-like protein, partial
(78%)
Length = 515
Score = 66.2 bits (160), Expect = 3e-12
Identities = 29/62 (46%), Positives = 45/62 (71%)
Frame = +1
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
+++ G V I+F G +EPAAY E++S+GG++P V KL +TI I+Q+NL I +RF++K
Sbjct: 211 VILKGSVPISFEGNKEPAAYAEIVSMGGINPEVKRKLINTIGTILQSNLSIPRTRFFLKV 390
Query: 63 SD 64
D
Sbjct: 391 FD 396
>CO981344
Length = 782
Score = 63.2 bits (152), Expect = 2e-11
Identities = 27/58 (46%), Positives = 43/58 (73%)
Frame = -3
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYI 60
+++ G V I+F G +EPAAY E++S+GG++P V KL +TI I+Q+NL I +RF++
Sbjct: 174 VILKGSVPISFEGNKEPAAYAEIVSMGGINPEVKRKLINTIGTILQSNLSIPRTRFFL 1
>BG509443 similar to PIR|T48186|T481 light-inducible protein ATLS1 -
Arabidopsis thaliana, partial (42%)
Length = 384
Score = 62.8 bits (151), Expect = 3e-11
Identities = 29/61 (47%), Positives = 43/61 (69%)
Frame = +3
Query: 15 GTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKFSDVQPSFVGFNG 74
G +PAAYGEL+S+G L+P +N KLS+ IA +++T L + SRF++KFS+ + NG
Sbjct: 165 GLPQPAAYGELVSMGALNPELNKKLSAGIACVLETKLLVPKSRFFLKFSNTEGYNCALNG 344
Query: 75 S 75
S
Sbjct: 345 S 347
>TC218703 weakly similar to GB|AAM60978.1|21536646|AY084404 LS1-like protein
{Arabidopsis thaliana;} , partial (91%)
Length = 579
Score = 62.4 bits (150), Expect = 4e-11
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 3 ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
+++ V I+F G +EPAAY E++S+GG++ V KL +TI I+Q+NL I +RF++K
Sbjct: 220 VILKSSVPISFEGNKEPAAYAEIVSMGGINTEVKRKLIATIGTILQSNLSIPRTRFFLKV 399
Query: 63 SDV 65
DV
Sbjct: 400 FDV 408
>BE347193
Length = 157
Score = 57.8 bits (138), Expect = 1e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2
Query: 17 EEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKFSDVQ 66
E+PAAYGE ++IGGL+P+VN +LS+ IA I+ T L + +SRF +K D Q
Sbjct: 5 EQPAAYGEPVAIGGLNPSVNNELSAAIASILGTKLSLPNSRFLLKVYDTQ 154
>BE807349 similar to GP|8843819|dbj| light-inducible protein ATLS1-like
{Arabidopsis thaliana}, partial (16%)
Length = 256
Score = 51.2 bits (121), Expect = 9e-08
Identities = 24/56 (42%), Positives = 36/56 (63%)
Frame = +2
Query: 11 IAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKFSDVQ 66
I GGT EPAAYGEL+S+G L P + +L + I +++T SSR+ ++F D +
Sbjct: 86 ICLGGTYEPAAYGELVSMGALTP*LIGRLMAGIVCVLETGFFAPSSRYSLEFYDTE 253
>BU761195
Length = 472
Score = 28.1 bits (61), Expect = 0.86
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 49 TNLHIHSSRFYIKFSDVQPSFVGFNGS 75
T +H+H R + F D PSFV N S
Sbjct: 269 TEIHLHKERTRLLFRDQTPSFVPLNES 349
>TC215492 similar to UP|Q9VHB7 (Q9VHB7) CG8208-PA (LD22928p), partial (6%)
Length = 1424
Score = 26.2 bits (56), Expect = 3.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 13 FGGTEEPAAYGELISIGGLDPTVNAK 38
FGGTEEP EL+S G T + K
Sbjct: 95 FGGTEEPEPKDELLSSIGESDTTSLK 18
>TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 816
Score = 25.8 bits (55), Expect = 4.2
Identities = 9/26 (34%), Positives = 17/26 (64%)
Frame = +3
Query: 46 IIQTNLHIHSSRFYIKFSDVQPSFVG 71
I+ +N + +RFY+ F+ ++PS G
Sbjct: 15 ILFSNFSVSGTRFYLHFAHLEPSLSG 92
>TC214702 homologue to UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, complete
Length = 868
Score = 25.8 bits (55), Expect = 4.2
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
Frame = -1
Query: 28 IGGLDPTVNAKLSSTIAQIIQTNLHIHSS-RFYIKFSDVQP 67
+ G PTV A LS+ +I NLH + F +KF+ P
Sbjct: 232 LSGSIPTVEANLSTVCEEIQWVNLHSNGRFVFLLKFTGKMP 110
>TC204953 homologue to UP|PDA1_VIGUN (O04865) Phospholipase D alpha 1 (PLD
alpha 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D 1) ,
partial (47%)
Length = 1288
Score = 25.8 bits (55), Expect = 4.2
Identities = 20/75 (26%), Positives = 30/75 (39%), Gaps = 8/75 (10%)
Frame = +2
Query: 5 VNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQ--------TNLHIHSS 56
++GG A F T E AA LIS G D ++ + I+ N + S
Sbjct: 125 IDGGAAFGFPETPEDAARAGLIS--GKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGS 298
Query: 57 RFYIKFSDVQPSFVG 71
F D++P +G
Sbjct: 299 SFAWSADDIKPEDIG 343
>TC227278 homologue to UP|O48879 (O48879) Ribosomal protein L22 (Fragment),
partial (98%)
Length = 858
Score = 25.0 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 49 TNLHIHSSRFYIKFSDVQPSFVGFN 73
TNL HSS F + +++ P +GF+
Sbjct: 331 TNLINHSSSFISRHTNISPHSIGFH 257
>TC214708 homologue to UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, partial (97%)
Length = 1329
Score = 25.0 bits (53), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 28 IGGLDPTVNAKLSSTIAQIIQTNLHIHSSR-FYIKFSDVQP 67
+ G PTV A LSS +I NLH + F +F+ P
Sbjct: 196 LSGSIPTVKANLSSVCEEIQWVNLHSNGRLVFLFQFTGKMP 74
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,860,459
Number of Sequences: 63676
Number of extensions: 27046
Number of successful extensions: 158
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 77
length of database: 12,639,632
effective HSP length: 53
effective length of query: 24
effective length of database: 9,264,804
effective search space: 222355296
effective search space used: 222355296
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC126781.3