BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126780.8 - phase: 0 /pseudo
(172 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229331 similar to UP|Q8L9N5 (Q8L9N5) Pore protein homolog, par... 258 1e-69
TC229332 weakly similar to UP|Q93Z87 (Q93Z87) Stress-inducible m... 195 1e-50
TC231882 weakly similar to UP|Q93Z87 (Q93Z87) Stress-inducible m... 153 4e-38
BE824338 similar to GP|21593908|gb| pore protein homolog {Arabid... 120 4e-28
TC216064 homologue to UP|Q41050 (Q41050) Core protein, partial (... 84 3e-17
TC216065 homologue to UP|Q41050 (Q41050) Core protein, partial (... 82 1e-16
TC216066 similar to UP|Q41050 (Q41050) Core protein, partial (92%) 77 5e-15
BU965516 similar to GP|21593908|gb| pore protein homolog {Arabid... 71 2e-13
AW460062 similar to PIR|T06471|T064 core protein - garden pea, p... 44 3e-05
TC223642 UP|MSDA_DROME (Q9VBL6) Accessory gland-specific peptide... 42 1e-04
TC220208 weakly similar to GB|AAR26375.1|38678780|AY463974 mitoc... 34 0.039
BM086213 homologue to PIR|T06471|T064 core protein - garden pea,... 33 0.066
TC228206 similar to UP|Q38820 (Q38820) Inner mitochondrial membr... 30 0.56
TC228536 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import ... 28 2.1
TC228537 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import ... 28 2.1
TC218479 weakly similar to UP|Q75E80 (Q75E80) ABL148Cp, partial ... 28 2.1
TC228205 similar to UP|Q38820 (Q38820) Inner mitochondrial membr... 28 2.8
TC220138 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 27 3.6
TC214084 homologue to UP|Q9FE12 (Q9FE12) Peroxiredoxin precursor... 27 6.2
TC214085 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, part... 27 6.2
>TC229331 similar to UP|Q8L9N5 (Q8L9N5) Pore protein homolog, partial (73%)
Length = 621
Score = 258 bits (658), Expect = 1e-69
Identities = 130/178 (73%), Positives = 150/178 (84%), Gaps = 6/178 (3%)
Frame = +3
Query: 1 MNSNSNLETRTLLDELSDFNKGGLFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVI 60
+N++S+LETR+LLDEL +FNK GL D GHPL+NRI ESFVKAAGIGAVQAVSREAYFT I
Sbjct: 51 LNTSSDLETRSLLDELCNFNKKGLLDLGHPLLNRIFESFVKAAGIGAVQAVSREAYFTAI 230
Query: 61 EGTGIDNAGGMPPEISGAKKNRFHGLRDQ------Q*IY*GNGKESFQWGLAAGLYSGLT 114
+GTG DN+GG+PPEIS AKKNR GL+ + + + GKES QWG+AAGLYSGLT
Sbjct: 231 DGTGADNSGGLPPEISSAKKNRLPGLKGETSNKSLEAMVKSTGKESLQWGVAAGLYSGLT 410
Query: 115 YGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAISTAANLLTGI 172
YG+KEARG HDWKNSAVAGAITGA LA T ++++HEQI QCAITGAAISTAANLLTGI
Sbjct: 411 YGLKEARGAHDWKNSAVAGAITGATLALTLEDSTHEQIVQCAITGAAISTAANLLTGI 584
>TC229332 weakly similar to UP|Q93Z87 (Q93Z87) Stress-inducible membrane pore
protein, partial (55%)
Length = 476
Score = 195 bits (495), Expect = 1e-50
Identities = 96/137 (70%), Positives = 113/137 (82%), Gaps = 6/137 (4%)
Frame = +2
Query: 1 MNSNSNLETRTLLDELSDFNKGGLFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVI 60
+N++SNLETR+LLDEL +F+K GLFD GHPL+NRI E+FVKAAGIGAVQAVSREAYFT I
Sbjct: 65 LNTSSNLETRSLLDELCNFHKKGLFDLGHPLLNRILETFVKAAGIGAVQAVSREAYFTAI 244
Query: 61 EGTGIDNAGGMPPEISGAKKNRFHGLRDQ------Q*IY*GNGKESFQWGLAAGLYSGLT 114
EGTG DN+GG+PPEIS AKKNR L+ + + + GKES QWG+AAGLY+GLT
Sbjct: 245 EGTGTDNSGGLPPEISSAKKNRLPSLKGETNNKSLEAMVKNTGKESLQWGVAAGLYAGLT 424
Query: 115 YGMKEARGTHDWKNSAV 131
YG+KEARG HDWKNSAV
Sbjct: 425 YGLKEARGAHDWKNSAV 475
>TC231882 weakly similar to UP|Q93Z87 (Q93Z87) Stress-inducible membrane pore
protein, partial (76%)
Length = 826
Score = 153 bits (386), Expect = 4e-38
Identities = 78/119 (65%), Positives = 90/119 (75%), Gaps = 6/119 (5%)
Frame = +2
Query: 60 IEGTGIDNAGGMPPEISGAKKNRFHGLRDQ------Q*IY*GNGKESFQWGLAAGLYSGL 113
I G +DN GGMP E+S AKK+R HGLR + + + GKES QWGLAAG+YSGL
Sbjct: 353 IIGNRMDNTGGMPSEVSNAKKHRLHGLRGETSSKSLEAMVKNTGKESLQWGLAAGIYSGL 532
Query: 114 TYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAISTAANLLTGI 172
TYG+KEARG +DWKNSA+AG ITGA LA TS +TS E + CAITGAAISTAANLLTGI
Sbjct: 533 TYGLKEARGANDWKNSAMAGGITGATLALTSGDTSQEHMVHCAITGAAISTAANLLTGI 709
Score = 97.8 bits (242), Expect = 2e-21
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +3
Query: 2 NSNSNLETRTLLDELSDFNKGGLFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIE 61
+SN NLETR+ LDE+ FNKGGLFD GHPL+NRIAESFVKA+GIGAVQAVSREAYF+ ++
Sbjct: 18 SSNVNLETRSPLDEVICFNKGGLFDLGHPLLNRIAESFVKASGIGAVQAVSREAYFSAVD 197
Query: 62 G 62
G
Sbjct: 198G 200
>BE824338 similar to GP|21593908|gb| pore protein homolog {Arabidopsis
thaliana}, partial (39%)
Length = 583
Score = 120 bits (300), Expect = 4e-28
Identities = 58/69 (84%), Positives = 64/69 (92%)
Frame = -2
Query: 104 GLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAIS 163
G+AAGLYSGLTYG+KEARG HDWKNSAVAGAITGA LA T ++++HEQI QCAITGAAIS
Sbjct: 291 GVAAGLYSGLTYGLKEARGAHDWKNSAVAGAITGATLALTLEDSTHEQIVQCAITGAAIS 112
Query: 164 TAANLLTGI 172
TAANLLTGI
Sbjct: 111 TAANLLTGI 85
>TC216064 homologue to UP|Q41050 (Q41050) Core protein, partial (90%)
Length = 754
Score = 84.0 bits (206), Expect = 3e-17
Identities = 49/144 (34%), Positives = 75/144 (52%)
Frame = +3
Query: 26 DFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTGIDNAGGMPPEISGAKKNRFHG 85
D G+P +N + F+K + A ++ + + Y + +G IS
Sbjct: 60 DMGNPFLNLTVDGFLKIGAVAATRSAAEDTYHIIQKGN-----------ISS-------- 182
Query: 86 LRDQQ*IY*GNGKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSD 145
RD + KE WG AG+Y G+ YG++ RGT DWKN+ + GA+TGA ++ S+
Sbjct: 183 -RDFEKTLKKMCKEGVYWGTIAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGALVSAASN 359
Query: 146 NTSHEQIAQCAITGAAISTAANLL 169
N ++IA AITGAAI+TAA +
Sbjct: 360 N-KKDKIAIDAITGAAIATAAEFI 428
>TC216065 homologue to UP|Q41050 (Q41050) Core protein, partial (92%)
Length = 782
Score = 82.4 bits (202), Expect = 1e-16
Identities = 48/144 (33%), Positives = 74/144 (51%)
Frame = +1
Query: 26 DFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTGIDNAGGMPPEISGAKKNRFHG 85
D G+P +N + F+K + A ++ + + Y + +G N E + K
Sbjct: 130 DMGNPFLNLTVDGFLKIGAVAATRSAAEDTYHIIQKG----NISSHDFEKTLKKMC---- 285
Query: 86 LRDQQ*IY*GNGKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSD 145
KE WG AG+Y G+ YG++ RGT DWKN+ + GA+TGA ++ S+
Sbjct: 286 ------------KEGVYWGTIAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGALVSAASN 429
Query: 146 NTSHEQIAQCAITGAAISTAANLL 169
N ++IA AITGAAI+TAA +
Sbjct: 430 N-KKDKIAIDAITGAAIATAAEFI 498
>TC216066 similar to UP|Q41050 (Q41050) Core protein, partial (92%)
Length = 667
Score = 76.6 bits (187), Expect = 5e-15
Identities = 45/144 (31%), Positives = 70/144 (48%)
Frame = +3
Query: 26 DFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTGIDNAGGMPPEISGAKKNRFHG 85
D G+P +N + F+K + A ++ + + Y + G N E + K
Sbjct: 87 DMGNPFLNLTVDGFLKIGAVAATRSAAEDTYHIIRNG----NISSHDFEKTLKKMC---- 242
Query: 86 LRDQQ*IY*GNGKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSD 145
KE WG AG+Y G+ YG++ RGT DWKN+ + GA+T L+ +
Sbjct: 243 ------------KEGVYWGTLAGVYLGMEYGVERIRGTRDWKNAMIGGAVTATLLSVATT 386
Query: 146 NTSHEQIAQCAITGAAISTAANLL 169
N + ++I AITGAAI+TAA +
Sbjct: 387 N-NKDKIVPDAITGAAIATAAEFI 455
>BU965516 similar to GP|21593908|gb| pore protein homolog {Arabidopsis
thaliana}, partial (18%)
Length = 286
Score = 71.2 bits (173), Expect = 2e-13
Identities = 32/45 (71%), Positives = 41/45 (91%)
Frame = +2
Query: 1 MNSNSNLETRTLLDELSDFNKGGLFDFGHPLVNRIAESFVKAAGI 45
+N++SNLETR+LLDEL +F+K GLFD GHPL+NRI E+FVKAAG+
Sbjct: 35 LNTSSNLETRSLLDELCNFHKKGLFDLGHPLLNRILETFVKAAGV 169
>AW460062 similar to PIR|T06471|T064 core protein - garden pea, partial (62%)
Length = 277
Score = 44.3 bits (103), Expect = 3e-05
Identities = 20/49 (40%), Positives = 27/49 (54%)
Frame = +2
Query: 98 KESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDN 146
KE G AG+Y G+ Y + GT DWKN+ + GA+T L+ S N
Sbjct: 131 KEGVYRGTIAGVYLGMEYWVDRIHGTIDWKNAMIGGAVTSTLLSVASIN 277
>TC223642 UP|MSDA_DROME (Q9VBL6) Accessory gland-specific peptide 57Da
precursor (Male accessory gland secretory protein 57Da),
partial (13%)
Length = 436
Score = 42.4 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 35/71 (48%)
Frame = +1
Query: 97 GKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCA 156
G+ + G AG++S G++ RG +DW N + GA+ GAA A + S Q+ A
Sbjct: 169 GRFGTRCGFVAGVFSITRCGVQRYRGRNDWVNGLIGGAVAGAAAAAAAGTRSWSQVIGMA 348
Query: 157 ITGAAISTAAN 167
+ AA+
Sbjct: 349 GLVSVFCAAAD 381
>TC220208 weakly similar to GB|AAR26375.1|38678780|AY463974 mitochondrial
inner membrane translocase TM23-3 {Arabidopsis
thaliana;} , partial (87%)
Length = 833
Score = 33.9 bits (76), Expect = 0.039
Identities = 24/63 (38%), Positives = 29/63 (45%)
Frame = +2
Query: 104 GLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAIS 163
G+ +++GL GM RGT D NSAVAG TG + S AI GA
Sbjct: 374 GVVGLIFAGLESGMTYLRGTDDLVNSAVAGLGTGTLFRAAAGPRS------AAIAGAIGG 535
Query: 164 TAA 166
AA
Sbjct: 536 IAA 544
>BM086213 homologue to PIR|T06471|T064 core protein - garden pea, partial
(23%)
Length = 428
Score = 33.1 bits (74), Expect = 0.066
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 104 GLAAGLYSGLTYGMKEARGTHDW 126
G AG+Y G+ YG++ RGT DW
Sbjct: 162 GTIAGVYVGMEYGVERIRGTRDW 230
>TC228206 similar to UP|Q38820 (Q38820) Inner mitochondrial membrane protein
(Mitochondrial inner membrane translocase TM23-2) (Inner
mitochondrial membrane protein; 26940-26374), partial
(90%)
Length = 1268
Score = 30.0 bits (66), Expect = 0.56
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 96 NGKESFQWGLAAG----LYSGLTYGMKEARGTHDWKNSAVAGAITGA 138
+G WG G LY+G+ G++ R T D NS AG TGA
Sbjct: 418 SGHAGRAWGNRLGVIGLLYAGIESGIEATRDTDDVWNSVAAGLGTGA 558
>TC228536 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import inner
membrane translocase subunit Tim17, partial (49%)
Length = 473
Score = 28.1 bits (61), Expect = 2.1
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 103 WGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALA 141
WG GL+S M AR D NS VAGA TG L+
Sbjct: 318 WG---GLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLS 425
>TC228537 similar to UP|IM17_ARATH (Q9SP35) Mitochondrial import inner
membrane translocase subunit Tim17, partial (68%)
Length = 954
Score = 28.1 bits (61), Expect = 2.1
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +1
Query: 103 WGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGAALA 141
WG GL+S M AR D NS VAGA TG L+
Sbjct: 298 WG---GLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLS 405
>TC218479 weakly similar to UP|Q75E80 (Q75E80) ABL148Cp, partial (34%)
Length = 908
Score = 28.1 bits (61), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 109 LYSGLTYGMKEARGTHDWKNSAVAGAITGAALA 141
++S +++AR HD N+ VAG TG A++
Sbjct: 516 IFSAAECVVEKARAKHDITNTVVAGCATGGAIS 614
>TC228205 similar to UP|Q38820 (Q38820) Inner mitochondrial membrane protein
(Mitochondrial inner membrane translocase TM23-2) (Inner
mitochondrial membrane protein; 26940-26374), partial
(73%)
Length = 528
Score = 27.7 bits (60), Expect = 2.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 96 NGKESFQWGLAAG----LYSGLTYGMKEARGTHDWKNSAVAGAITGA 138
+G WG G LY+G+ G++ T D NS AG TGA
Sbjct: 366 SGHAGRAWGNRLGVIGLLYAGIESGIEATTDTDDVWNSVAAGLGTGA 506
>TC220138 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (6%)
Length = 913
Score = 27.3 bits (59), Expect = 3.6
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +1
Query: 4 NSNLETRTLLDELSDFNKGGLFDFGHPLVNRIAES 38
NS L+ R D +DF++GG F P ++ IAES
Sbjct: 733 NSVLKRRREYDNTNDFSRGGSF----PAISTIAES 825
>TC214084 homologue to UP|Q9FE12 (Q9FE12) Peroxiredoxin precursor, partial
(52%)
Length = 1017
Score = 26.6 bits (57), Expect = 6.2
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +2
Query: 17 SDFNKGGLFDFGHPLVNRIAESFVKAAGI 45
+D GGL D +PL++ + +S K+ G+
Sbjct: 497 TDRKSGGLGDLNYPLISDVTKSISKSYGV 583
>TC214085 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, partial (84%)
Length = 1129
Score = 26.6 bits (57), Expect = 6.2
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +1
Query: 17 SDFNKGGLFDFGHPLVNRIAESFVKAAGI 45
+D GGL D +PL++ + +S K+ G+
Sbjct: 616 TDRKSGGLGDLNYPLISDVTKSISKSYGV 702
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,936,280
Number of Sequences: 63676
Number of extensions: 60405
Number of successful extensions: 235
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of query: 172
length of database: 12,639,632
effective HSP length: 91
effective length of query: 81
effective length of database: 6,845,116
effective search space: 554454396
effective search space used: 554454396
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC126780.8