BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126019.10 + phase: 0
(435 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227603 UP|Q6TXD0 (Q6TXD0) 3-ketoacyl-CoA thiolase , complete 728 0.0
TC225397 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferas... 669 0.0
TC225396 similar to UP|P93112 (P93112) 3-ketoacyl-CoA thiolase p... 357 8e-99
TC226615 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase ... 216 1e-56
TC212397 homologue to UP|Q6TXD0 (Q6TXD0) 3-ketoacyl-CoA thiolase... 108 2e-50
AW756823 similar to GP|29717540|gb Sequence 8 from patent US 651... 178 5e-45
TC207422 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, p... 155 4e-38
BE608485 similar to GP|16648799|gb| At2g33150/F25I18.11 {Arabido... 144 6e-35
TC207421 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, p... 126 2e-29
TC222788 homologue to UP|Q6TXD0 (Q6TXD0) 3-ketoacyl-CoA thiolase... 114 7e-26
BE608022 99 4e-21
TC226616 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase ... 84 1e-16
AW733435 homologue to GP|16417944|gb acetyl Co-A acetyltransfera... 62 2e-16
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 80 1e-15
TC218854 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfe... 65 8e-11
CF805946 60 1e-09
TC218855 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfe... 57 2e-08
TC212169 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfe... 55 8e-08
BG727021 39 0.006
AW423357 GP|29717540|gb Sequence 8 from patent US 6518488, parti... 34 0.11
>TC227603 UP|Q6TXD0 (Q6TXD0) 3-ketoacyl-CoA thiolase , complete
Length = 1770
Score = 728 bits (1879), Expect = 0.0
Identities = 375/445 (84%), Positives = 403/445 (90%), Gaps = 10/445 (2%)
Frame = +3
Query: 1 MEKAVERQRVLLQHLNPNSVTSS-----HHSTHLSASLCSA-----GQTGGSENDVVIVA 50
M+KA++RQRVLL HL P S +S+ H ST LSASLC A GQ GGS++DVVIVA
Sbjct: 93 MDKAIQRQRVLLDHLQPISSSSNFSSQTHQSTDLSASLCFAKNSSHGQIGGSDDDVVIVA 272
Query: 51 AYRTAICKAKRGGFKDTLPDDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGPGSERAIEC 110
AYRTAICKAKRGGFKDTLPDDLLA+VLKAVIEKTNV P+EVGDIVVGTVL PGS+R IEC
Sbjct: 273 AYRTAICKAKRGGFKDTLPDDLLATVLKAVIEKTNVNPAEVGDIVVGTVLAPGSDRGIEC 452
Query: 111 RMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQDTISGV 170
RMAAFYAGFP+TVPLRTVNRQCSSGLQAV+DVAAYIKAGFY+IGIGAGLE MT D ++ +
Sbjct: 453 RMAAFYAGFPETVPLRTVNRQCSSGLQAVSDVAAYIKAGFYEIGIGAGLESMTVDRVNRL 632
Query: 171 RKTNPKVEIFAQARDCLLSMGITSENVAQRYGVTRQEQDQAAVESHRRAAAATASGKFKD 230
NPKVE FA+ARDCLL MGITSENVAQRYGVTR EQDQAAVESH+RAAAATA+GKFK+
Sbjct: 633 PNINPKVETFAEARDCLLPMGITSENVAQRYGVTRLEQDQAAVESHKRAAAATAAGKFKE 812
Query: 231 EIIPVSTKFVDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKPAFKKDGTTTAGNASQVSD 290
EIIPVSTKFVDPKTG EK+IIVSVDDGIRPN NLVDLAKLKPAF+KDGTTTAGNASQ+SD
Sbjct: 813 EIIPVSTKFVDPKTGVEKKIIVSVDDGIRPNTNLVDLAKLKPAFQKDGTTTAGNASQISD 992
Query: 291 GAAAVLLMKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNID 350
GAAAVLLMKR VAVQKGLPILGIFRSF+AVGVDPAVMGVGPA AIPAAVKS GLEL NID
Sbjct: 993 GAAAVLLMKRRVAVQKGLPILGIFRSFAAVGVDPAVMGVGPAVAIPAAVKSVGLELGNID 1172
Query: 351 LYEINEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKD 410
L+EINEAFASQ+VY KKLGLDP KVNVNGGA+A GHPLG TGARCVATLLNEMKRRGKD
Sbjct: 1173LFEINEAFASQYVYCLKKLGLDPRKVNVNGGAIALGHPLGVTGARCVATLLNEMKRRGKD 1352
Query: 411 CRFGVISMCIGSGMGAAAVFERGDF 435
CR+GVISMCIGSGMGAAAVFERGDF
Sbjct: 1353CRYGVISMCIGSGMGAAAVFERGDF 1427
>TC225397 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase
(3-ketoacyl-coa thiolase) , complete
Length = 1697
Score = 669 bits (1726), Expect = 0.0
Identities = 336/440 (76%), Positives = 385/440 (87%), Gaps = 6/440 (1%)
Frame = +2
Query: 1 MEKAVERQRVLLQHLNPNSVTSSHHSTHLSASLCSAGQTGGSE------NDVVIVAAYRT 54
MEKA+ RQ++LL HLNP+S T + S+ L AS C AG + + +DVVIVAAYRT
Sbjct: 95 MEKAINRQKILLHHLNPSSSTHPNESSSLHASACVAGDSAAYQRTSTFGDDVVIVAAYRT 274
Query: 55 AICKAKRGGFKDTLPDDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGPGSERAIECRMAA 114
A CKAKRGGFKDTLPDDLLA VLKAVIEKTNV PSEVGDIVVG+VL PG++RA ECRMAA
Sbjct: 275 AHCKAKRGGFKDTLPDDLLAPVLKAVIEKTNVNPSEVGDIVVGSVLAPGAQRASECRMAA 454
Query: 115 FYAGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQDTISGVRKTN 174
FYAGFP+TVP+RTVNRQCSSGLQAVADVAA I+AGFYDIGIGAGLE MT + + N
Sbjct: 455 FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIRAGFYDIGIGAGLESMTTNPMGWDGSVN 634
Query: 175 PKVEIFAQARDCLLSMGITSENVAQRYGVTRQEQDQAAVESHRRAAAATASGKFKDEIIP 234
PKV++F QA++CLL MGITSENVAQR+GV+R+EQDQAAVESHRRAAAATA+GKFKDEI+P
Sbjct: 635 PKVKMFEQAQNCLLPMGITSENVAQRFGVSRKEQDQAAVESHRRAAAATAAGKFKDEIVP 814
Query: 235 VSTKFVDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKPAFKKDGTTTAGNASQVSDGAAA 294
V+TK VDPKTGEEK + +SVDDGIRP + DL +LKP FKKDG+TTAGN+SQV+DGA+A
Sbjct: 815 VTTKIVDPKTGEEKSVTISVDDGIRPGTTVSDLGRLKPVFKKDGSTTAGNSSQVTDGASA 994
Query: 295 VLLMKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNIDLYEI 354
VLLMKRSVA+QKGLPILG+FR+F+AVGVDPA+MGVGPA AIP AVK+AGLEL +IDL+EI
Sbjct: 995 VLLMKRSVALQKGLPILGVFRTFAAVGVDPAIMGVGPAAAIPVAVKAAGLELDDIDLFEI 1174
Query: 355 NEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCRFG 414
NEAFASQFVY KLGLDP K+NVNGGAMA GHPLG+TGARCVATLL+EMK+RG+DCRFG
Sbjct: 1175NEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGSTGARCVATLLHEMKKRGRDCRFG 1354
Query: 415 VISMCIGSGMGAAAVFERGD 434
VISMCIG+GMGAAAVFE GD
Sbjct: 1355VISMCIGTGMGAAAVFESGD 1414
>TC225396 similar to UP|P93112 (P93112) 3-ketoacyl-CoA thiolase precursor ,
partial (51%)
Length = 897
Score = 357 bits (915), Expect = 8e-99
Identities = 174/216 (80%), Positives = 196/216 (90%)
Frame = +3
Query: 219 AAAATASGKFKDEIIPVSTKFVDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKPAFKKDG 278
AAAATA GKFKDEI+PV+TK VDPKTGEEK + +SVDDGIRP + DL +LKP FKKDG
Sbjct: 3 AAAATAXGKFKDEIVPVTTKIVDPKTGEEKSVTISVDDGIRPGTTVSDLGRLKPVFKKDG 182
Query: 279 TTTAGNASQVSDGAAAVLLMKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAA 338
+TTAGN+SQVSDGAAAVLLMKRSVA+QKGLPILG+FR+F+AVGVDPA+MGVGPA AIP A
Sbjct: 183 STTAGNSSQVSDGAAAVLLMKRSVALQKGLPILGVFRTFAAVGVDPAIMGVGPAAAIPVA 362
Query: 339 VKSAGLELSNIDLYEINEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLGATGARCVA 398
VK+AGLEL +IDL+EINEAFASQFVY LGLDP K+NVNGGAMA GHPLG+TGARCVA
Sbjct: 363 VKAAGLELDDIDLFEINEAFASQFVYCRNNLGLDPEKINVNGGAMAIGHPLGSTGARCVA 542
Query: 399 TLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFERGD 434
TLL+EMK+RG+DCRFGVISMCIG+GMGAAAVFE GD
Sbjct: 543 TLLHEMKKRGRDCRFGVISMCIGTGMGAAAVFESGD 650
>TC226615 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase , complete
Length = 1617
Score = 216 bits (551), Expect = 1e-56
Identities = 153/422 (36%), Positives = 226/422 (53%), Gaps = 18/422 (4%)
Frame = +3
Query: 28 HLS-ASLCSAGQTGGSENDVVIVAAYRTAICKAKRGGFKDTLPD----DLLASVLKAVIE 82
HLS A + +A DV IV RT + GGF TL L + ++A ++
Sbjct: 60 HLSMAPVAAASSDSIKPRDVCIVGVARTPM-----GGFLGTLSSLSATKLGSIAIEAALK 224
Query: 83 KTNVEPSEVGDIVVGTVLGPGSERAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADV 142
+ NV+PS V ++ G VL +A R AA AG ++V TVN+ C+SG++A
Sbjct: 225 RANVDPSLVEEVFFGNVLSANLGQA-PARQAALGAGISNSVICTTVNKVCASGMKAAMLA 401
Query: 143 AAYIKAGFYDIGIGAGLECMTQ------DTISGVRKTNPKVEIFAQARDCL------LSM 190
A I+ G D+ + G+E M+ + G R + + + +D L + M
Sbjct: 402 AQSIQLGTNDVVVAGGMESMSNVPKYLAEARKGSRLGHDSL-VDGMLKDGLWDVYKDVGM 578
Query: 191 GITSENVAQRYGVTRQEQDQAAVESHRRAAAATASGKFKDEIIPVSTKFVDPKTGEEKQI 250
G+ +E A + +TR +QD A++S R AA SG F EI PV V G +
Sbjct: 579 GVCAELCADNHALTRDDQDNYAIQSFERGIAAQESGAFSWEIAPVE---VSGGRGRPSTV 749
Query: 251 IVSVDDGIRPNANLVDLAKLKPAFKKDG-TTTAGNASQVSDGAAAVLLMKRSVAVQKGLP 309
V D+G+ + L KL+P+FK+ G + TAGNAS +SDGAAA++L+ A++ GL
Sbjct: 750 -VDKDEGLG-KFDAAKLRKLRPSFKETGGSVTAGNASSISDGAAALVLVSGEKALKLGLQ 923
Query: 310 ILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNIDLYEINEAFASQFVYSCKKL 369
++ ++ +P + P+ AIP A+ AGLE S ID YEINEAFA + + K L
Sbjct: 924 VIAKITGYADAAQEPELFTTAPSLAIPKAIAKAGLETSQIDFYEINEAFAVVALANQKLL 1103
Query: 370 GLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCRFGVISMCIGSGMGAAAV 429
GL+ KVNV+GGA+A GHPLG +GAR + TLL +K+ K+ ++GV +C G G +A V
Sbjct: 1104GLNSEKVNVHGGAVALGHPLGCSGARILVTLLGVLKQ--KNGKYGVGGICNGGGGASALV 1277
Query: 430 FE 431
E
Sbjct: 1278VE 1283
>TC212397 homologue to UP|Q6TXD0 (Q6TXD0) 3-ketoacyl-CoA thiolase , partial
(31%)
Length = 684
Score = 108 bits (269), Expect(3) = 2e-50
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = +1
Query: 296 LLMKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNIDLYEIN 355
LLMKR VAVQKGLPILGIFRSF+AVGVDPAVMGVGPA AIPAAVKS GLEL NIDL+EIN
Sbjct: 259 LLMKRRVAVQKGLPILGIFRSFAAVGVDPAVMGVGPAVAIPAAVKSVGLELGNIDLFEIN 438
Query: 356 E 356
E
Sbjct: 439 E 441
Score = 74.7 bits (182), Expect(3) = 2e-50
Identities = 38/52 (73%), Positives = 42/52 (80%)
Frame = +3
Query: 240 VDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKPAFKKDGTTTAGNASQVSDG 291
+DPKTG +K+IIVS IRP NL DLA LKPAF KDGTTTAGNASQ+SDG
Sbjct: 90 LDPKTGVDKKIIVSFFFCIRPITNLADLAGLKPAFHKDGTTTAGNASQISDG 245
Score = 55.5 bits (132), Expect(3) = 2e-50
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +2
Query: 213 VESHRRAAAATASGKFKDEIIPVSTKFVDP 242
VESH+RAAAATA+GKFK+EIIPVSTKFV P
Sbjct: 8 VESHKRAAAATAAGKFKEEIIPVSTKFVGP 97
>AW756823 similar to GP|29717540|gb Sequence 8 from patent US 6518488,
partial (31%)
Length = 433
Score = 178 bits (451), Expect = 5e-45
Identities = 89/144 (61%), Positives = 113/144 (77%)
Frame = +2
Query: 153 IGIGAGLECMTQDTISGVRKTNPKVEIFAQARDCLLSMGITSENVAQRYGVTRQEQDQAA 212
IG+GAG+E MT + + NP V++F A++CLL MGITSENVAQR+GV+R+EQD AA
Sbjct: 2 IGMGAGVESMTTNPMGWDGSVNPNVKMFEHAQNCLLPMGITSENVAQRFGVSRKEQDHAA 181
Query: 213 VESHRRAAAATASGKFKDEIIPVSTKFVDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKP 272
ESH RAAAATA+GK+KDEI P +TK VDPKTGEEK + +SVDDGIRP DL +L+P
Sbjct: 182 AESHTRAAAATAAGKYKDEIDPDTTKIVDPKTGEEKSVSMSVDDGIRPVTTESDLGRLEP 361
Query: 273 AFKKDGTTTAGNASQVSDGAAAVL 296
++D +TTAG+ SQV+DGA+AVL
Sbjct: 362 VIERDRSTTAGDTSQVTDGASAVL 433
>TC207422 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, partial (64%)
Length = 1128
Score = 155 bits (391), Expect = 4e-38
Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 3/223 (1%)
Frame = +1
Query: 190 MGITSENVAQRYGVTRQEQDQAAVESHRRAAAATASGKFKDEIIPVSTKFVDPKTGEEK- 248
MG +E A ++ +TR EQD A+ S R +A +G F EI+PV TG +
Sbjct: 82 MGACAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVS-----TGRGRA 246
Query: 249 QIIVSVDDGIRPNANLVDLAKLKPAFKK-DGTTTAGNASQVSDGAAAVLLMKRSVAVQKG 307
IV D+G+ + L KL+P+FK+ G+ TAGNAS +SDGAAA++L+ A + G
Sbjct: 247 STIVDKDEGLG-KFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELG 423
Query: 308 LPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNIDLYEINEAFASQFVYSCK 367
L ++ + + P + P+ AIP A+ +AGL+ S ID YEINEAF+ + + K
Sbjct: 424 LHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQK 603
Query: 368 KLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMK-RRGK 409
L L+P KVNV GGA++ GHPLG +GAR + TLL ++ +RGK
Sbjct: 604 LLALNPEKVNVYGGAVSLGHPLGCSGARILVTLLGVLRQKRGK 732
>BE608485 similar to GP|16648799|gb| At2g33150/F25I18.11 {Arabidopsis
thaliana}, partial (20%)
Length = 403
Score = 144 bits (364), Expect = 6e-35
Identities = 80/112 (71%), Positives = 90/112 (79%), Gaps = 10/112 (8%)
Frame = +2
Query: 1 MEKAVERQRVLLQHLNPNSVTSSH-----HSTHLSASLCSAG-----QTGGSENDVVIVA 50
MEKA++RQRVLL+HL P S +S S LS SLC AG QTGGS++DVVIVA
Sbjct: 68 MEKAIQRQRVLLEHLQPIS*SSGGWGGGGQSAGLSXSLCFAGNSSHGQTGGSDDDVVIVA 247
Query: 51 AYRTAICKAKRGGFKDTLPDDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGP 102
AYRTAICKAKRGGFKDTLP+DLLA+VLKAVIEKTNV+P+EVGDIV GTVL P
Sbjct: 248 AYRTAICKAKRGGFKDTLPNDLLATVLKAVIEKTNVDPAEVGDIVWGTVLAP 403
>TC207421 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, partial (40%)
Length = 821
Score = 126 bits (317), Expect = 2e-29
Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Frame = +3
Query: 269 KLKPAFKKDGTT-TAGNASQVSDGAAAVLLMKRSVAVQKGLPILGIFRSFSAVGVDPAVM 327
KL FK TA NA +SDGAAA++L+ A + GL ++ + + P +
Sbjct: 6 KLXXXFKXXXXXVTAXNAXSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELF 185
Query: 328 GVGPAFAIPAAVKSAGLELSNIDLYEINEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGH 387
P+ AIP A+ +AGL+ S ID YEINEAF+ + + K LGLDP KVN +GGA++ GH
Sbjct: 186 TTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLGLDPEKVNAHGGAVSLGH 365
Query: 388 PLGATGARCVATLLNEMK-RRGKDCRFGVISMCIGSGMGAAAVFE 431
PLG +GAR + TLL ++ +RGK +GV ++C G G +A V E
Sbjct: 366 PLGCSGARILVTLLGVLRQKRGK---YGVAAICNGGGGASALVLE 491
>TC222788 homologue to UP|Q6TXD0 (Q6TXD0) 3-ketoacyl-CoA thiolase , partial
(13%)
Length = 385
Score = 114 bits (286), Expect = 7e-26
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 378 VNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDF 435
VNGGA+A GHPLG TGARCVATLLNEMKR GKDCRFGVISMCIGSGMGAAAVFERGDF
Sbjct: 2 VNGGAIALGHPLGVTGARCVATLLNEMKRGGKDCRFGVISMCIGSGMGAAAVFERGDF 175
>BE608022
Length = 382
Score = 99.0 bits (245), Expect = 4e-21
Identities = 55/126 (43%), Positives = 79/126 (62%)
Frame = +2
Query: 63 GFKDTLPDDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGPGSERAIECRMAAFYAGFPDT 122
G +DTLP+DLLASV+ A TN+ P++ G + L P S + +E +M G P+T
Sbjct: 5 G*QDTLPNDLLASVVLAGTLITNLIPAKHGYMGGDAALLPASNQRLESQMTVLNTGMPET 184
Query: 123 VPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQDTISGVRKTNPKVEIFAQ 182
VPL+TVNRQC+S L A +D+AAYIK+ FY+I I LEC+T ++ + NP ++ A
Sbjct: 185 VPLQTVNRQCTSALHAGSDIAAYIKSVFYEISIKTLLECITIYHLNHLPNINPGMKTLA* 364
Query: 183 ARDCLL 188
D +L
Sbjct: 365 THDSIL 382
>TC226616 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase , partial
(24%)
Length = 685
Score = 84.3 bits (207), Expect = 1e-16
Identities = 54/126 (42%), Positives = 68/126 (53%), Gaps = 28/126 (22%)
Frame = +1
Query: 334 AIPAAVKSAGLELSNIDLYEINEAFASQF-------------------VYSC-------- 366
AIP A+ AGLE S ID YEINEAFA F Y C
Sbjct: 13 AIPKAIAKAGLETSQIDFYEINEAFAVGFHVIFNXSHFSTHDAVNFNSSYCCL*VVALAN 192
Query: 367 -KKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCRFGVISMCIGSGMG 425
K LGL+ KVN++GGA+A GHPLG +GAR + TLL +K+ K+ ++GV +C G G
Sbjct: 193 QKLLGLNSEKVNLHGGAVALGHPLGCSGARILVTLLGVLKQ--KNGKYGVGGICNGGGGA 366
Query: 426 AAAVFE 431
+A V E
Sbjct: 367 SALVVE 384
>AW733435 homologue to GP|16417944|gb acetyl Co-A acetyltransferase {Hevea
brasiliensis}, partial (25%)
Length = 420
Score = 62.0 bits (149), Expect(2) = 2e-16
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 367 KKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMK-RRGKDCRFGVISMCIGSGMG 425
K L L+P KVNV GGA++ GHPLG +GAR + TLL ++ +RGK +GV ++C G G
Sbjct: 190 KLLALNPEKVNVYGGAVSLGHPLGCSGARILVTLLGVLRQKRGK---YGVAAICNGGGGA 360
Query: 426 AAAVFE 431
+A V E
Sbjct: 361 SALVLE 378
Score = 41.6 bits (96), Expect(2) = 2e-16
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +2
Query: 331 PAFAIPAAVKSAGLELSNIDLYEINEAFA 359
P+ AIP A+ +AGL+ S ID YEINEAF+
Sbjct: 11 PSLAIPKAISNAGLDASQIDYYEINEAFS 97
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 80.5 bits (197), Expect = 1e-15
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 393 GARCVATLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFERGD 434
GARCVATLL+EMK RG+DCRFGVISMCIG+GMGAAAVFE GD
Sbjct: 1119 GARCVATLLHEMKTRGRDCRFGVISMCIGTGMGAAAVFESGD 1244
>TC218854 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (37%)
Length = 749
Score = 64.7 bits (156), Expect = 8e-11
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Frame = +1
Query: 19 SVTSSHHSTHLSASLCSAGQTGGSENDVVIVAAYRTAICKAKRGGFKDTLPD----DLLA 74
SVT S +S + + T DV IV RT I GG TL +L +
Sbjct: 166 SVTIKRPSFLISDARSPSMSTCVKSRDVCIVGVARTPI-----GGLLGTLSSLSATELGS 330
Query: 75 SVLKAVIEKTNVEPSEVGDIVVGTVLGPGSERAIECRMAAFYAGFPDTVPLRTVNRQCSS 134
+K +++ NV+PS V ++ G VL +A R AA AG P +V T+N+ C+S
Sbjct: 331 IAIKTALKRANVDPSLVQEVFFGNVLSANLGQA-PARQAALGAGIPTSVICTTINKVCAS 507
Query: 135 GLQAVADVAAYIKAGFYDIGIGAGLECMT 163
G++A A I+ G D+ + G+E M+
Sbjct: 508 GMKATMLAALTIQFGLNDVVVAGGMESMS 594
>CF805946
Length = 633
Score = 60.5 bits (145), Expect = 1e-09
Identities = 26/30 (86%), Positives = 30/30 (99%)
Frame = -2
Query: 393 GARCVATLLNEMKRRGKDCRFGVISMCIGS 422
GARCVATLL+EMK+RG+DCRFGVISMCIG+
Sbjct: 455 GARCVATLLHEMKKRGRDCRFGVISMCIGT 366
Score = 34.7 bits (78), Expect = 0.086
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -3
Query: 394 ARCVATLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFERGD 434
+ C+ L ++ GK+ +G + G+GMGAAAVFE GD
Sbjct: 358 SHCIFVCLCALQHHGKN--YGCCQL*AGTGMGAAAVFESGD 242
>TC218855 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (26%)
Length = 469
Score = 56.6 bits (135), Expect = 2e-08
Identities = 40/115 (34%), Positives = 57/115 (48%), Gaps = 4/115 (3%)
Frame = +1
Query: 39 TGGSENDVVIVAAYRTAICKAKRGGFKDTLPD----DLLASVLKAVIEKTNVEPSEVGDI 94
T DV IV RT I GG TL +L + +K+ +E+ NV+PS V ++
Sbjct: 136 TSAKSRDVCIVGVARTPI-----GGLLGTLSSLSATELGSIAIKSALERANVDPSLVQEV 300
Query: 95 VVGTVLGPGSERAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAG 149
G VL +A R AA AG P +V T+N+ C+SG++A A I+ G
Sbjct: 301 FFGNVLSANLGQA-PARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFG 462
>TC212169 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (19%)
Length = 635
Score = 54.7 bits (130), Expect = 8e-08
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +1
Query: 375 KVNVNGGAMAFGHPLGATGARCVATLLNEMK-RRGKDCRFGVISMCIGSGMGAAAVFE 431
KVNV GGA++ GHPLG +GAR + TLL ++ +RGK +GV ++C G G +A V E
Sbjct: 211 KVNVYGGAVSLGHPLGCSGARXLVTLLGVLRQKRGK---YGVAAICNGGGGASALVLE 375
>BG727021
Length = 387
Score = 38.5 bits (88), Expect = 0.006
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +1
Query: 278 GTTTAGNASQVSDGAAAVLLMKRSVAVQKGLPIL 311
G+ TAGNAS +SDGAAA++L+ A++ GL ++
Sbjct: 22 GSVTAGNASSISDGAAALVLVSGEKALKLGLQVI 123
Score = 30.4 bits (67), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 323 DPAVMGVGPAFAIPAAVKSAGLELSNID 350
+P + P+ AIP A+ AGLE S ID
Sbjct: 303 EPELFTTAPSLAIPKAIAKAGLETSQID 386
>AW423357 GP|29717540|gb Sequence 8 from patent US 6518488, partial (3%)
Length = 347
Score = 34.3 bits (77), Expect = 0.11
Identities = 14/17 (82%), Positives = 17/17 (99%)
Frame = +2
Query: 305 QKGLPILGIFRSFSAVG 321
QKGLPILG+FR+F+AVG
Sbjct: 296 QKGLPILGVFRTFAAVG 346
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,821,909
Number of Sequences: 63676
Number of extensions: 168901
Number of successful extensions: 966
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of query: 435
length of database: 12,639,632
effective HSP length: 100
effective length of query: 335
effective length of database: 6,272,032
effective search space: 2101130720
effective search space used: 2101130720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC126019.10