TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126015.11 + phase: 0 
         (371 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222263 similar to UP|Q8VYW0 (Q8VYW0) AT3g52260/T25B15_30, part...   415  e-116
TC224437 weakly similar to UP|Q97H99 (Q97H99) Predicted pseudour...   211  4e-55
BM085735                                                               58  6e-09
BQ273553 similar to GP|6721111|gb|A T4O12.25 {Arabidopsis thalia...    45  7e-05
TC221333 similar to UP|Q8W4Q8 (Q8W4Q8) AT5g51140/MWD22_8, partia...    30  1.3
TC206834 similar to UP|Q944I3 (Q944I3) AT3g01400/T13O15_4, parti...    30  1.3
BM108273 similar to GP|18376331|emb related to hydroxyproline-ri...    29  3.0
AI441847 homologue to PIR|T11622|T11 extensin class 1 precursor ...    28  6.6
TC232629                                                               28  6.6
BM271034 similar to GP|10177899|dbj contains similarity to integ...    28  8.7

>TC222263 similar to UP|Q8VYW0 (Q8VYW0) AT3g52260/T25B15_30, partial (65%)
          Length = 729

 Score =  415 bits (1067), Expect = e-116
 Identities = 203/242 (83%), Positives = 222/242 (90%)
 Frame = +3

Query: 11  WPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPN 70
           WPE NDGLSYDDVVR SDAG TLIEFYSTKYKSSAPLQGWLQRIKS QIT+D  VVTD N
Sbjct: 3   WPECNDGLSYDDVVRASDAGATLIEFYSTKYKSSAPLQGWLQRIKSGQITVDGGVVTDSN 182

Query: 71  TILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQL 130
           T+LRVGSKL+YHR+PWKEPDAPH I+VLYEDDD+IALNKPSGLQVLPGGL+QQRT+LTQL
Sbjct: 183 TVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLYQQRTILTQL 362

Query: 131 QWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGR 190
           QWE NN+ T E H++ HPVPVHRLGRGTSGILLCAKTKLARARLAS+FADGTS + GK R
Sbjct: 363 QWEANNQGTCEMHKRLHPVPVHRLGRGTSGILLCAKTKLARARLASHFADGTSHVGGK-R 539

Query: 191 HTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHV 250
            T QELGKIAK+YRALVSGI+ ND+VTINQPIG+VKYPGVAKGLYVAS+SGKPALSVV +
Sbjct: 540 DTKQELGKIAKMYRALVSGIVENDKVTINQPIGIVKYPGVAKGLYVASESGKPALSVVDI 719

Query: 251 LE 252
           LE
Sbjct: 720 LE 725


>TC224437 weakly similar to UP|Q97H99 (Q97H99) Predicted pseudouridylate
           synthase, YLYB B.subtilis ortholog, partial (11%)
          Length = 543

 Score =  211 bits (537), Expect = 4e-55
 Identities = 101/121 (83%), Positives = 109/121 (89%), Gaps = 2/121 (1%)
 Frame = +2

Query: 251 LERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFA 310
           LE N++ENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLY VGGQPKCLDCDF+DESFA
Sbjct: 26  LETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGVGGQPKCLDCDFVDESFA 205

Query: 311 EDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSILQTHEEA--IAQAQQ 368
           EDGGY RP+KPVPGDCGY+LHAH+L LSHP TNE+IE+IAPLPS L T EEA  IA  QQ
Sbjct: 206 EDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNELIEIIAPLPSALHTAEEAKEIAIMQQ 385

Query: 369 T 369
           T
Sbjct: 386 T 388


>BM085735 
          Length = 422

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 35/73 (47%), Positives = 46/73 (62%), Gaps = 3/73 (4%)
 Frame = -1

Query: 221 PIGMVKYPGVA---KGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIH 277
           PIG  K+   A   + L  +++  K A   + +   N+ +   + QVKIQSGRPHQIRIH
Sbjct: 266 PIGYPKFCLCASCYESLLRSNKRKKKATIKLEIQNLNIPD-CLVCQVKIQSGRPHQIRIH 90

Query: 278 LSFIGHPLLGDPL 290
           LSFIGHPLLG+ L
Sbjct: 89  LSFIGHPLLGEYL 51


>BQ273553 similar to GP|6721111|gb|A T4O12.25 {Arabidopsis thaliana}, partial
           (6%)
          Length = 420

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 22/48 (45%), Positives = 31/48 (63%)
 Frame = +2

Query: 244 ALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLY 291
           A S   V+E     + +LV+ K+++GR HQIR H  ++G PLLGD LY
Sbjct: 14  AASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELY 157


>TC221333 similar to UP|Q8W4Q8 (Q8W4Q8) AT5g51140/MWD22_8, partial (19%)
          Length = 629

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +2

Query: 273 QIRIHLSFIGHPLLGDPLY 291
           QIR+HL + GHP+  D LY
Sbjct: 11  QIRVHLQYSGHPIANDMLY 67


>TC206834 similar to UP|Q944I3 (Q944I3) AT3g01400/T13O15_4, partial (89%)
          Length = 1740

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 32   TLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTI 72
            T I  Y   YK+S+PL+ +LQ   S  +  DAR V    TI
Sbjct: 1711 TRIILYHKLYKASSPLRRYLQSFNSPSLLEDARCVLTKFTI 1589


>BM108273 similar to GP|18376331|emb related to hydroxyproline-rich
           glycoprotein {Neurospora crassa}, partial (2%)
          Length = 414

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 25/76 (32%), Positives = 29/76 (37%), Gaps = 7/76 (9%)
 Frame = -3

Query: 272 HQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLH 331
           H    HL F+GHPLL  P   +G              F   G Y   S P P    YH H
Sbjct: 253 HHHHQHLXFLGHPLL--PPLGIG---------HYSYHFQL*GTYMXESHPPP----YHSH 119

Query: 332 A-------HRLFLSHP 340
           A       H +F S+P
Sbjct: 118 AFFPSLTPHLVFFSYP 71


>AI441847 homologue to PIR|T11622|T11 extensin class 1 precursor - cowpea,
           partial (29%)
          Length = 429

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (53%)
 Frame = +3

Query: 328 YHLHAHRLFLSHPITNEIIEMIAPLPSILQT 358
           +HL    L L HP    II ++ PLP +L T
Sbjct: 294 HHLTITNLLLLHPQLPTIINLLLPLPPLLTT 386


>TC232629 
          Length = 514

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 93  HTIEVLYEDDDIIALNKPSGLQVLPGGL-FQQRTVLTQL 130
           HT++VLY+D  ++ L  P     +PG L F++  VL QL
Sbjct: 325 HTLQVLYQDFSLVTLQVP----YVPGFLAFREAPVLLQL 429


>BM271034 similar to GP|10177899|dbj contains similarity to integral membrane
           protein~gene_id:K16H17.9 {Arabidopsis thaliana}, partial
           (12%)
          Length = 425

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 134 TNNKSTIEAHQKPHPVPVHRLGRGTS 159
           TN K     H + HP P+ R GRG S
Sbjct: 91  TNQKGNRHHHGQRHPFPILRWGRGLS 14


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,943,230
Number of Sequences: 63676
Number of extensions: 223177
Number of successful extensions: 1070
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of query: 371
length of database: 12,639,632
effective HSP length: 99
effective length of query: 272
effective length of database: 6,335,708
effective search space: 1723312576
effective search space used: 1723312576
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)