BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126014.4 + phase: 0
(91 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213759 44 2e-05
TC206833 homologue to UP|Q6PDS7 (Q6PDS7) Hist1h4h protein (Fragm... 40 2e-04
BE657787 38 7e-04
BU091471 37 0.002
TC231841 35 0.005
TC211809 35 0.005
CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigr... 34 0.011
TC211538 33 0.018
BG154679 33 0.031
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 33 0.031
TC210600 similar to UP|Q51534 (Q51534) PilW protein, partial (7%) 32 0.041
TC222789 32 0.054
TC222857 32 0.054
TC213061 32 0.054
TC212197 32 0.054
CO979823 32 0.070
CO984521 31 0.091
TC233199 31 0.091
TC233392 31 0.12
BU548170 30 0.16
>TC213759
Length = 681
Score = 43.5 bits (101), Expect = 2e-05
Identities = 20/61 (32%), Positives = 34/61 (54%)
Frame = +2
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSYTDRWRDPLLC 86
W +WLIW + N+ IF K V ++DSV ++ W+KA FS++D +P++
Sbjct: 287 WLVVIWLIWLQRNTIIFRGKQACVQEVVDSVVFKTWSWVKAYYARDTFSFSD*LLNPVIS 466
Query: 87 M 87
+
Sbjct: 467 L 469
>TC206833 homologue to UP|Q6PDS7 (Q6PDS7) Hist1h4h protein (Fragment),
complete
Length = 1119
Score = 40.4 bits (93), Expect = 2e-04
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -3
Query: 6 LHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
L+ G L G R+ +V W A W IWK N+ IF++ T + +LD + WL
Sbjct: 328 LYHIGGLEGGVRANRW--KVWWLALTWTIWKHRNNVIFSNATFDANKVLDDALFLLWTWL 155
Query: 66 KANKLTSAFS-YTDRWRDPL 84
+ L FS + + W L
Sbjct: 154 R--NLEKGFSTHYNHWSSNL 101
>BE657787
Length = 789
Score = 38.1 bits (87), Expect = 7e-04
Identities = 24/76 (31%), Positives = 35/76 (45%), Gaps = 1/76 (1%)
Frame = -1
Query: 10 GNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK 69
G L G R+ +V W A W IWK N+ IF++ T + +LD + WL+
Sbjct: 645 GGLEGGVRANRW--KVWWLALTWTIWKHRNNVIFSNATFDANKVLDDALFLLWTWLR--N 478
Query: 70 LTSAFS-YTDRWRDPL 84
L FS + + W L
Sbjct: 477 LEKGFSTHYNHWSSNL 430
>BU091471
Length = 428
Score = 37.0 bits (84), Expect = 0.002
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = -1
Query: 24 QVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSYTDRWRDP 83
+VI A V +W+ N +F + ++ +++SVK+ S+ WL+ K A+ + +P
Sbjct: 224 RVICFAVVLALWEAQNGIVFENTDMQIMGIVESVKIKSWNWLRVRKKGFAYFMGSWF*NP 45
Query: 84 LLCM 87
L C+
Sbjct: 44 LACI 33
>TC231841
Length = 791
Score = 35.4 bits (80), Expect = 0.005
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 7 HRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
H +G AG S + W A W IWK+ N+ IF++ T +LD + WL
Sbjct: 435 HIYGVTAGMRASRWKWW---WLALTWTIWKQRNNMIFSNGTFNANKILDEAIFLIWTWL 602
>TC211809
Length = 895
Score = 35.4 bits (80), Expect = 0.005
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 26 IWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK--LTSAFSY 76
+W A W+IWK N +F++ + + +++ L ++ WLK + T FS+
Sbjct: 590 LWVALTWVIWKHRNGVVFHNHSFDGSKVMEDAILLTWSWLKVMEKGFTGPFSF 748
>CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigrum
granulovirus}, partial (5%)
Length = 701
Score = 34.3 bits (77), Expect = 0.011
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -1
Query: 4 DNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFL 63
DN + +LAG+ R+++ ++ W A IW N IFN++ ++ L+D ++
Sbjct: 380 DNFLQHCSLAGS-RNSNRRRKIWWIAATRSIWNLRNDMIFNNQPFDISKLVDKAIFLTWS 204
Query: 64 WLK 66
WL+
Sbjct: 203 WLR 195
>TC211538
Length = 987
Score = 33.5 bits (75), Expect = 0.018
Identities = 14/39 (35%), Positives = 18/39 (45%)
Frame = +2
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
W A W IWK N IF++ T +LD + WL
Sbjct: 764 WLALTWTIWKHRNDIIFSNGTFNANRILDDAVFLLWTWL 880
>BG154679
Length = 339
Score = 32.7 bits (73), Expect = 0.031
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSYTDRWRDPL 84
W A IW N +F ++T ++D V L + WLKA + F + + W L
Sbjct: 13 WIALTRTIWHHRNKLVFENQTFNATKVMDDVLLLLWSWLKATEKDFVFHF-NHWSSNL 183
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 32.7 bits (73), Expect = 0.031
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 24 QVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLK 66
Q W A W IWK NS +F++ + + L + + WL+
Sbjct: 359 QCWWMALTWSIWKTRNSIVFSNASFDANQLFEDAVFILWTWLR 487
>TC210600 similar to UP|Q51534 (Q51534) PilW protein, partial (7%)
Length = 1093
Score = 32.3 bits (72), Expect = 0.041
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLK 66
W A W+IWK N +F++ + + ++D + WLK
Sbjct: 774 WVALTWVIWKHRNGVVFHNHSFDGSKVMDDAIFLFWSWLK 893
>TC222789
Length = 954
Score = 32.0 bits (71), Expect = 0.054
Identities = 16/54 (29%), Positives = 26/54 (47%)
Frame = +2
Query: 12 LAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL 65
+AG R+T + W A W IW++ N IF + + + L+D + WL
Sbjct: 635 MAGGIRTTRW--KCWWLAVTWTIWQQRNKIIFFNDSFDANKLIDEAAFLLWTWL 790
>TC222857
Length = 657
Score = 32.0 bits (71), Expect = 0.054
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -3
Query: 2 VRDNLHRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTS 61
+ D+ +F +L A + + Q W A W IW+ NS +F++ T + L++
Sbjct: 373 ITDHFMQFSSLKEAGIRSRRW-QWWWMAVTWSIWQLRNSIVFSNATFDGNKLVEDASFLL 197
Query: 62 FLWLKANKLTSAFS-YTDRWRDPL 84
+ WL + L FS + ++W L
Sbjct: 196 WTWL--HNLEKDFSLHFNQWSSNL 131
>TC213061
Length = 823
Score = 32.0 bits (71), Expect = 0.054
Identities = 15/51 (29%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
Frame = +2
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLK--ANKLTSAFS 75
W A W IWK N IF++ T ++D + W + N TS ++
Sbjct: 551 WLALTWTIWKHRNDIIFSNATFNAHKVMDDAVFLIWTWFRHLENDFTSHYN 703
>TC212197
Length = 423
Score = 32.0 bits (71), Expect = 0.054
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +3
Query: 28 HACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWL------KANKLTSAF 74
+A +W +WK+ N IF +KT EV +SV + WL K N LT F
Sbjct: 240 YAIIWSVWKKRNECIFRNKTFEV----ESVMMM*NSWLGLGGKAKLNPLTILF 386
>CO979823
Length = 853
Score = 31.6 bits (70), Expect = 0.070
Identities = 13/41 (31%), Positives = 19/41 (45%)
Frame = -2
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
W A W IW+ N +F + T +L+ L + W KA
Sbjct: 279 WIALTWTIWQHRNKVVFQNATFHGNKVLEDALLLLWSWFKA 157
>CO984521
Length = 716
Score = 31.2 bits (69), Expect = 0.091
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = -2
Query: 27 WHACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLK 66
W A + IWK NS IF++ + L+D + WL+
Sbjct: 223 WFALTYSIWKHRNSIIFSNANFDAHKLMDDAVFILWTWLR 104
>TC233199
Length = 1105
Score = 31.2 bits (69), Expect = 0.091
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = +1
Query: 29 ACVWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLK 66
A VW IW+ NS IF++ + V LL+ + WL+
Sbjct: 772 AVVWSIWQMRNSIIFSNASFNVNKLLEDAMFLIWSWLR 885
>TC233392
Length = 1145
Score = 30.8 bits (68), Expect = 0.12
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 27 WHACVWLIWKETNSRIF-NHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSYTDRWRDPLL 85
W A W +WK N IF N + + LL D+V L + W++A + + Y ++W L+
Sbjct: 233 WIALTWSLWKHRNQVIFQNAQFNGIKLLEDAVFL-HWTWIRAMEKDFSMHY-NQWSSNLI 60
>BU548170
Length = 653
Score = 30.4 bits (67), Expect = 0.16
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Frame = -3
Query: 32 WLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK--LTSAFSY 76
W IWK N +F++++ E ++D + WLK + T FSY
Sbjct: 303 WTIWKH*NGVVFDNQSFEGSKVMDDALFLLWSWLKVMEKGFTMHFSY 163
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.137 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,747,334
Number of Sequences: 63676
Number of extensions: 84241
Number of successful extensions: 711
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of query: 91
length of database: 12,639,632
effective HSP length: 67
effective length of query: 24
effective length of database: 8,373,340
effective search space: 200960160
effective search space used: 200960160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC126014.4