BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126014.1 + phase: 0
(405 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218500 364 e-101
TC209784 UP|Q8BY04 (Q8BY04) Mus musculus 7 days neonate cerebell... 334 4e-92
TC216525 171 4e-43
CD415065 124 6e-29
TC210653 similar to UP|Q9M9U5 (Q9M9U5) F6A14.15 protein (At1g187... 98 6e-21
AW568997 96 4e-20
BU577809 weakly similar to GP|14517472|gb| At1g18740/F6A14_15 {A... 92 3e-19
TC212810 similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), pa... 86 3e-17
TC213055 64 2e-10
TC205045 similar to UP|P93166 (P93166) SCOF-1, partial (45%) 41 9e-04
TC230239 weakly similar to UP|Q93Z73 (Q93Z73) At2g46080/T3F17.27... 41 0.001
TC221809 weakly similar to UP|Q93Z73 (Q93Z73) At2g46080/T3F17.27... 40 0.001
TC205046 similar to UP|P93166 (P93166) SCOF-1, partial (43%) 40 0.002
TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%) 32 0.40
TC228857 weakly similar to UP|Q9W0H4 (Q9W0H4) CG2469-PA (Cg2469-... 32 0.52
TC219679 similar to UP|Q9FVD3 (Q9FVD3) Hexokinase, partial (64%) 30 2.6
CD392370 29 4.4
BI788283 similar to GP|5702231|gb| hypersensitive reaction assoc... 29 4.4
TC211256 similar to UP|Q940U5 (Q940U5) At1g27700/T22C5_14, parti... 28 5.7
>TC218500
Length = 1133
Score = 364 bits (934), Expect = e-101
Identities = 183/323 (56%), Positives = 240/323 (73%), Gaps = 1/323 (0%)
Frame = +2
Query: 79 CQEEFKAILHTHKGQVVRPPLDRMVSEYFERSVKALDVCNAIRDGVEQIRVWQKLLEIVL 138
CQEEF+AIL +K QV +PPLDRM+SE+FERSVKALD+CNA RDG+E+IR WQK LEIV
Sbjct: 5 CQEEFRAILLNNKEQVTKPPLDRMISEFFERSVKALDICNASRDGIEKIRTWQKHLEIVF 184
Query: 139 YAL-DHQRSIGEGQFRRAKKALIDLSISMLDDGKESNASVAHRNRSFGRSNGGRDRDHHQ 197
AL +R++ EG FRRA+KAL+DL+++MLD+ KES + + RNRSFGR N +D
Sbjct: 185 CALGSSKRALTEGHFRRARKALMDLALAMLDE-KESGSVFSQRNRSFGRHNSSKDH---- 349
Query: 198 HGNSHSNNNINTYQHRSMGQFRSLSWSVSRTWSAARQLQAIGNNINPPRANDLMATNGLA 257
H S G RS SWSVSR+WSAA+QLQ+I NN+ PRA ++ A +GL
Sbjct: 350 --------------HSSSGHSRSHSWSVSRSWSAAKQLQSIANNLVSPRATEIAAASGLV 487
Query: 258 MSVYTMNSVLLFVMWALVAAIPCQDRGLNVHFSIPRSYTWAIPLLLLHERIMEESKKRDR 317
+ VYT+N +LL V+W LVAAIPCQDRGL++HFS+PR +W+ P+ L+ERI EESKKR+R
Sbjct: 488 IPVYTINCILLIVLWTLVAAIPCQDRGLSIHFSVPRQLSWSTPVTALYERITEESKKRER 667
Query: 318 KNACGLLREIQQIEKCVRVMSDLVDSAHFPLTEEKEGEVRQKVHEVSKVCDALKDGLDPL 377
+N+ GLL+EI Q+E R ++DL+DSA FPL +++ EV + V E+ VC+A ++GLDPL
Sbjct: 668 RNSNGLLKEIYQVEVSSRRLTDLIDSAQFPLANDQKTEVERDVMELMSVCEAFRNGLDPL 847
Query: 378 ERQVREVFHRIVRSKTEGLDSLG 400
ERQVREVF +I+ +TEGLD LG
Sbjct: 848 ERQVREVFRKIMACRTEGLDYLG 916
>TC209784 UP|Q8BY04 (Q8BY04) Mus musculus 7 days neonate cerebellum cDNA,
RIKEN full-length enriched library, clone:A730012G10
product:CEREBELLUM POSTNATAL DEVELOPMENT ASSOCIATED
PROTEIN 2, full insert sequence, partial (6%)
Length = 1004
Score = 334 bits (857), Expect = 4e-92
Identities = 165/245 (67%), Positives = 196/245 (79%), Gaps = 1/245 (0%)
Frame = +2
Query: 158 ALIDLSISMLDD-GKESNASVAHRNRSFGRSNGGRDRDHHQHGNSHSNNNINTYQHRSMG 216
AL+DL+I MLDD S+ S+AHRNRSFGR+N +D H H NS G
Sbjct: 5 ALVDLAIGMLDDKDTSSSGSIAHRNRSFGRNNASKD---HHHNNS-------------FG 136
Query: 217 QFRSLSWSVSRTWSAARQLQAIGNNINPPRANDLMATNGLAMSVYTMNSVLLFVMWALVA 276
FRSLSWSVSR WSAARQLQA+GNN++PP+AND++ATNGLA+ +YTM+ VL+FVMWALVA
Sbjct: 137 HFRSLSWSVSRNWSAARQLQALGNNLSPPKANDIVATNGLALPIYTMSCVLVFVMWALVA 316
Query: 277 AIPCQDRGLNVHFSIPRSYTWAIPLLLLHERIMEESKKRDRKNACGLLREIQQIEKCVRV 336
AIPCQDRGL +HFS+PR WA P++ LH+RI+EESKKR+RKN CGLL+EI QIEKC RV
Sbjct: 317 AIPCQDRGLGLHFSLPRQLPWAAPVVALHDRILEESKKRERKNTCGLLKEIHQIEKCARV 496
Query: 337 MSDLVDSAHFPLTEEKEGEVRQKVHEVSKVCDALKDGLDPLERQVREVFHRIVRSKTEGL 396
++DL DS FP +EEK EVRQ+V +VSKVC+ALKDGLDPLERQVREVFHRIVR +TEGL
Sbjct: 497 INDLADSVQFPXSEEKGEEVRQRVQDVSKVCEALKDGLDPLERQVREVFHRIVRGRTEGL 676
Query: 397 DSLGR 401
DS GR
Sbjct: 677 DSHGR 691
>TC216525
Length = 832
Score = 171 bits (434), Expect = 4e-43
Identities = 84/103 (81%), Positives = 93/103 (89%)
Frame = +2
Query: 302 LLLHERIMEESKKRDRKNACGLLREIQQIEKCVRVMSDLVDSAHFPLTEEKEGEVRQKVH 361
L LHERI+EESKKR+RKN+CGLL+EI QIEKC RVM+DL DS HFPLTE KE EVRQ V
Sbjct: 2 LSLHERIVEESKKRERKNSCGLLKEIHQIEKCARVMNDLADSVHFPLTEGKEREVRQIVQ 181
Query: 362 EVSKVCDALKDGLDPLERQVREVFHRIVRSKTEGLDSLGRPNN 404
EVS+VCDALK GLDPLERQVR+VFHRIVRS+TEGLDSLGRP+N
Sbjct: 182 EVSQVCDALKGGLDPLERQVRDVFHRIVRSRTEGLDSLGRPSN 310
>CD415065
Length = 535
Score = 124 bits (312), Expect = 6e-29
Identities = 59/127 (46%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Frame = -2
Query: 274 LVAAIPCQDR-GLNVHFSIPRSYTWAIPLLLLHERIMEESKKRDRKNACGLLREIQQIEK 332
LVAA+PCQ+R GL HF +PR WA P++ L E+I EE KK+++K GLL E+Q+++K
Sbjct: 528 LVAAVPCQERNGLGTHFPLPRQLGWAQPMIGLQEKIAEEWKKKEKKGNVGLLEEMQRMDK 349
Query: 333 CVRVMSDLVDSAHFPLTEEKEGEVRQKVHEVSKVCDALKDGLDPLERQVREVFHRIVRSK 392
+ + + DS FP E+ EV++ V E+ +C +++GL+PL++Q+REVFHR+VRS+
Sbjct: 348 LGQSLIEFADSFQFPTETERMDEVKKHVEELGDICKKMEEGLEPLQQQIREVFHRVVRSR 169
Query: 393 TEGLDSL 399
TE L +L
Sbjct: 168 TEFLLAL 148
>TC210653 similar to UP|Q9M9U5 (Q9M9U5) F6A14.15 protein
(At1g18740/F6A14_15), partial (6%)
Length = 718
Score = 98.2 bits (243), Expect = 6e-21
Identities = 47/73 (64%), Positives = 58/73 (79%)
Frame = +1
Query: 17 FGRSILSFRREQIHSMEGSTLEIELDSFQQHVTDRFVDLSSVPHDELLSLKWVGKMLDCF 76
F S+L+ R Q+HSMEGS++E ELD FQ+HVT+RF++LSSV ELLSL WV K+LD F
Sbjct: 490 FQGSVLNLRGVQVHSMEGSSMEQELDLFQKHVTERFLELSSVESGELLSLSWVRKLLDSF 669
Query: 77 LICQEEFKAILHT 89
L CQEEF+ ILHT
Sbjct: 670 LCCQEEFRVILHT 708
>AW568997
Length = 251
Score = 95.5 bits (236), Expect = 4e-20
Identities = 46/82 (56%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +1
Query: 80 QEEFKAILHTHKGQVVRPPLDRMVSEYFERSVKALDVCNAIRDGVEQIRVWQKLLEIVLY 139
QEEF+AIL +K QV +PP D M+SE+FE+SVKALD+CNA RDG+E+I WQK L+IV
Sbjct: 4 QEEFRAILLNNKEQVTKPPFDHMISEFFEKSVKALDICNASRDGIEKIHTWQKHLKIVFC 183
Query: 140 AL-DHQRSIGEGQFRRAKKALI 160
AL ++++ + F +A+KALI
Sbjct: 184 ALSSSKKALTKSHFAKARKALI 249
>BU577809 weakly similar to GP|14517472|gb| At1g18740/F6A14_15 {Arabidopsis
thaliana}, partial (10%)
Length = 429
Score = 92.4 bits (228), Expect = 3e-19
Identities = 48/91 (52%), Positives = 65/91 (70%), Gaps = 4/91 (4%)
Frame = +3
Query: 1 MPATDYQGSSPSSLTNFGRSILSFRREQIHSMEGS----TLEIELDSFQQHVTDRFVDLS 56
MP+T+ QGSS SS ++FGRSI R+EQ+HS+E S + +EL FQ+HVTDRF LS
Sbjct: 156 MPSTENQGSS-SSFSSFGRSIFGARQEQVHSVEASNESDSCNLELGLFQKHVTDRFQVLS 332
Query: 57 SVPHDELLSLKWVGKMLDCFLICQEEFKAIL 87
+ +E LS+ W+ K+L F+ CQEEF+AIL
Sbjct: 333 AASDEEFLSIDWIQKLLGAFISCQEEFRAIL 425
>TC212810 similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial (11%)
Length = 407
Score = 85.9 bits (211), Expect = 3e-17
Identities = 48/122 (39%), Positives = 77/122 (62%), Gaps = 16/122 (13%)
Frame = +1
Query: 22 LSFRREQIHSMEGS-TLEIE-LDSFQQHVTDRFVDL------------SSVPHDELLSLK 67
+S RR Q+ SM+GS E+E L+ FQ+H+ DRF +L +S D LLS+
Sbjct: 37 ISIRRNQVMSMDGSHDQEMEDLELFQKHIGDRFSELLSSTSEDSSSSSTSSSGDALLSIA 216
Query: 68 WVGKMLDCFLICQEEFKAILHTHK--GQVVRPPLDRMVSEYFERSVKALDVCNAIRDGVE 125
W+ ++LD FL C+ EFKA++ + Q+ +PPLD+++ + +R VK+LDVCNA+ G++
Sbjct: 217 WLRRLLDEFLCCEAEFKAVVLMGRDPSQITKPPLDKLLPDLLDRGVKSLDVCNAVTLGLD 396
Query: 126 QI 127
+
Sbjct: 397 AL 402
>TC213055
Length = 437
Score = 63.5 bits (153), Expect = 2e-10
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Frame = +2
Query: 1 MPATDYQGSSPSSLTNFGRSILSFRREQIHSMEGS----TLEIELDSFQQHVTDRFVDLS 56
MP+T+ QG S S ++FGRSI +EQ+HS+E S + +EL SFQ+ VTDRF DLS
Sbjct: 221 MPSTENQGFS-LSFSSFGRSIFGVGQEQVHSVEASNESDSCNLELGSFQKRVTDRFQDLS 397
Query: 57 SVPHDELLSLKWV 69
++ LS+ W+
Sbjct: 398 VASDEQFLSIDWI 436
>TC205045 similar to UP|P93166 (P93166) SCOF-1, partial (45%)
Length = 1150
Score = 41.2 bits (95), Expect = 9e-04
Identities = 21/68 (30%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Frame = +2
Query: 143 HQRSIGEGQFRRAKKALID--LSISMLDDGKESNASVAHRNRSFGRSNGGRDRDHHQHGN 200
H+++ E + AL + +S S + G+ S+ H++ G++ GG R H+ GN
Sbjct: 446 HRKASSESNPTASVSALANDSVSASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGN 625
Query: 201 SHSNNNIN 208
+HSN+N N
Sbjct: 626 NHSNSNAN 649
>TC230239 weakly similar to UP|Q93Z73 (Q93Z73) At2g46080/T3F17.27, partial
(84%)
Length = 1094
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/136 (24%), Positives = 60/136 (43%)
Frame = +2
Query: 41 LDSFQQHVTDRFVDLSSVPHDELLSLKWVGKMLDCFLICQEEFKAILHTHKGQVVRPPLD 100
L +F+ + +R +L DE+L+L W+ + + + ++ T V D
Sbjct: 2 LQAFEATLAERLKNLMPKSKDEILTLSWMTLAMKSLCESHNDIRTLM-TALELPVSDWED 178
Query: 101 RMVSEYFERSVKALDVCNAIRDGVEQIRVWQKLLEIVLYALDHQRSIGEGQFRRAKKALI 160
+ + Y + S K LD+CNA + ++ L+ L+ LD S Q+ RA
Sbjct: 179 KWIDVYLDISSKLLDICNAFSSELSRLNQGNLPLKCALHNLD---SASSKQYLRA----- 334
Query: 161 DLSISMLDDGKESNAS 176
S+LDD ++ +S
Sbjct: 335 ---CSLLDDWRQHVSS 373
>TC221809 weakly similar to UP|Q93Z73 (Q93Z73) At2g46080/T3F17.27, partial
(39%)
Length = 504
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/112 (25%), Positives = 49/112 (42%)
Frame = +2
Query: 35 STLEIELDSFQQHVTDRFVDLSSVPHDELLSLKWVGKMLDCFLICQEEFKAILHTHKGQV 94
S L + L +F+ + +R L DE+LSL W+ + + K I+ T
Sbjct: 155 SQLLLILHAFEATLEERLKKLIPKSKDEILSLSWMTLAMQALCESHNDIKTII-TELELP 331
Query: 95 VRPPLDRMVSEYFERSVKALDVCNAIRDGVEQIRVWQKLLEIVLYALDHQRS 146
V ++ + Y + SVK LD+C A + ++ LL+ L+ L S
Sbjct: 332 VHDWDEKWIDVYLDISVKLLDICIAFSSELSRLNQGHLLLQCALHNLGSSSS 487
>TC205046 similar to UP|P93166 (P93166) SCOF-1, partial (43%)
Length = 1110
Score = 40.0 bits (92), Expect = 0.002
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 162 LSISMLDDGKESNASVAHRNRSFGRSNGGRDRDHHQHGNSHSNNNIN 208
+S S + G+ S+ H++ G++ GG R H+ GN+HSN+N N
Sbjct: 445 VSASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNNHSNSNAN 585
>TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%)
Length = 945
Score = 32.3 bits (72), Expect = 0.40
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 163 SISMLDDGKESNASVAHRNRSFGRSNGGRDRDHHQHGNSHSNNN 206
S + G+ S+ H++ G++ GG R H++ GNS+ NNN
Sbjct: 453 SANTASGGRTHECSICHKSFPTGQALGGHKRCHYE-GNSNGNNN 581
>TC228857 weakly similar to UP|Q9W0H4 (Q9W0H4) CG2469-PA (Cg2469-pb)
(LD24034p), partial (5%)
Length = 884
Score = 32.0 bits (71), Expect = 0.52
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 11/79 (13%)
Frame = +2
Query: 180 RNRSFGRSNGGRDRDHHQHGNSHSNN--NINTYQH-----RSMGQFRSLSW----SVSRT 228
+ R GR + RD G SHS + + T+ + RS + RS SW S SR+
Sbjct: 8 QGRGRGRFDNRRDVSSKGRGRSHSRSPERVRTWDYSKSSSRSRSRSRSRSWSRGRSRSRS 187
Query: 229 WSAARQLQAIGNNINPPRA 247
WS R ++ +I+P R+
Sbjct: 188 WSRGRS-RSYSRSISPRRS 241
>TC219679 similar to UP|Q9FVD3 (Q9FVD3) Hexokinase, partial (64%)
Length = 1110
Score = 29.6 bits (65), Expect = 2.6
Identities = 14/46 (30%), Positives = 19/46 (40%)
Frame = -2
Query: 173 SNASVAHRNRSFGRSNGGRDRDHHQHGNSHSNNNINTYQHRSMGQF 218
+N +VAH GG D H + NTY+ R +G F
Sbjct: 236 TNHAVAHHQCRRSAYGGGADNGSSHRDLPHHSTETNTYESRKVGSF 99
>CD392370
Length = 372
Score = 28.9 bits (63), Expect = 4.4
Identities = 17/58 (29%), Positives = 25/58 (42%)
Frame = +2
Query: 138 LYALDHQRSIGEGQFRRAKKALIDLSISMLDDGKESNASVAHRNRSFGRSNGGRDRDH 195
+Y LD + GQ R + + S K SN ++NR F +G +RDH
Sbjct: 95 IYKLD----LFNGQSRDSNNRCVPSSTCNPHSSKSSNRVYTNKNRGFPSPDGASERDH 256
>BI788283 similar to GP|5702231|gb| hypersensitive reaction associated
Ca2+-binding protein {Phaseolus vulgaris}, partial (80%)
Length = 421
Score = 28.9 bits (63), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 222 SWSVSRTWSAARQLQAIGN 240
SWS SRTW+A R+ +A G+
Sbjct: 78 SWSASRTWNAGRKWEAEGH 22
>TC211256 similar to UP|Q940U5 (Q940U5) At1g27700/T22C5_14, partial (9%)
Length = 897
Score = 28.5 bits (62), Expect = 5.7
Identities = 26/78 (33%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
Frame = +1
Query: 79 CQEEFKAILHTHKGQVVRPP--LDRMVSEYFERSVKALDVCNAIRDGVEQIRVWQKLLEI 136
C+EE KA+L PP L+ + Y+ERS +L CN D +Q+ W L
Sbjct: 274 CEEEDKALL---------PPAGLNGGIEAYYERSKSSLGNCNECYD--KQLHGWYGALHR 420
Query: 137 VLYALDHQRSIGEGQFRR 154
L QRS + Q+ R
Sbjct: 421 QL-----QRSQYQMQYNR 459
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,465,692
Number of Sequences: 63676
Number of extensions: 263130
Number of successful extensions: 1579
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of query: 405
length of database: 12,639,632
effective HSP length: 99
effective length of query: 306
effective length of database: 6,335,708
effective search space: 1938726648
effective search space used: 1938726648
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC126014.1