BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126012.8 + phase: 0
(440 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF425842 132 2e-31
TC220753 119 2e-27
TC212986 116 2e-26
BE806360 similar to GP|6175165|gb| Mutator-like transposase {Ara... 53 2e-07
TC220322 35 3e-06
TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transp... 45 6e-05
BM108247 weakly similar to PIR|H84710|H847 Mutator-like transpos... 44 1e-04
TC232149 32 0.57
TC215912 similar to GB|AAS09986.1|41618940|AY519516 MYB transcri... 32 0.74
TC218865 similar to UP|O82651 (O82651) Squamosa-promoter binding... 31 0.97
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 30 2.2
TC215913 similar to GB|AAS09986.1|41618940|AY519516 MYB transcri... 29 3.7
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 29 4.8
TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 29 4.8
TC205359 homologue to GB|AAM64579.1|21592630|AY087018 silencing ... 28 6.3
TC207337 similar to UP|Q6K270 (Q6K270) Nodulation receptor kinas... 28 6.3
>BF425842
Length = 414
Score = 132 bits (333), Expect = 2e-31
Identities = 64/133 (48%), Positives = 84/133 (63%)
Frame = +3
Query: 25 RAQFHRLFWAFYPCINGFKYCKPVVHVDGTWLYDKYKGTLLLAVAQDGNNKTIPIAFALV 84
R +R+F AF PCI GFKYCKP+V VDGT+L KY TLL A+ QDG+ P+AFA+V
Sbjct: 15 RVILNRVF*AFNPCIEGFKYCKPLVQVDGTFLTGKYNDTLLTAIGQDGSRDNFPLAFAIV 194
Query: 85 EGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKSAFNDPRNGWQATGSAHVYCIRHI 144
E ETKE W +FL L R+VT ++C++SDR + + GW + VYCIRHI
Sbjct: 195 ESETKEAWIWFLHYL*RYVTPQPNLCIISDRGTGLLATLQSKHVGWNGPDVSSVYCIRHI 374
Query: 145 KQNFMRTIKDGDL 157
NF + K+ +L
Sbjct: 375 ASNFNK*FKNVNL 413
>TC220753
Length = 1312
Score = 119 bits (299), Expect = 2e-27
Identities = 65/183 (35%), Positives = 95/183 (51%)
Frame = +2
Query: 253 KAFARVGSGDLFSEYCQNAIQDDIVKSNTHHVEQFDRERYTFSVRETVNYREGRPMGTFK 312
K + +G +SE +Q++ + +H+V + RE V+E N R GR
Sbjct: 35 KIMNMIKAGHRYSEDVYVMMQENQHIATSHYVRMYVRETKEXEVQEIANTRLGRRGMACT 214
Query: 313 VDLRAGWCDCGKFQALHLPCSHVIAACSSFRHDYTTLIPHVFKNESVYSIYNTAFKVVHD 372
V L CD G+FQAL LPCSH IAAC+ +Y + V+K E+++ +Y F +
Sbjct: 215 VKLNEWLCDYGQFQALRLPCSHAIAACAFCNLNYDDFVDPVYKLENIFKVYQHHFHSLGS 394
Query: 373 KSYWLPYDGPVICHNPNMRRLKKGRPNSTRIRTEMDEEVVERTPTPRRCGLCRHTGHIRR 432
+ W Y GP +P+ RR GRP +TRI EMDE + R ++C LC+ GH +
Sbjct: 395 EDTWPQYLGPHFMSDPSKRRQISGRPATTRIHNEMDESIPNRL---KKCSLCKTEGHNQS 565
Query: 433 NCP 435
NCP
Sbjct: 566 NCP 574
>TC212986
Length = 404
Score = 116 bits (290), Expect = 2e-26
Identities = 55/122 (45%), Positives = 82/122 (67%)
Frame = +1
Query: 178 GVIQEANQRALDWVDNIPKEKWTQAYDEGRRWGHMTSNIVESWNSVFKGTRNLPVTPIVQ 237
G I+ A +W+D +PK+KW Q +DEG+RWG +T+N+ ES NS+FK TR+L V+ +V+
Sbjct: 16 GDIRANKPSAAEWLDQLPKQKWVQCFDEGKRWG-LTTNLSESVNSMFKNTRHLSVSSLVE 192
Query: 238 STYYRLACLFADRAQKAFARVGSGDLFSEYCQNAIQDDIVKSNTHHVEQFDRERYTFSVR 297
TY++ A LFA+R ++ A + SG +SE +AI +SNTH V +FDR +TF +
Sbjct: 193 ETYFKTAQLFANRGRQTQAMINSGSQYSEVVFDAINSGQQESNTHIVNEFDRHNHTFIIT 372
Query: 298 ET 299
ET
Sbjct: 373 ET 378
>BE806360 similar to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (17%)
Length = 431
Score = 53.1 bits (126), Expect = 2e-07
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Frame = +2
Query: 80 AFALVEGETKEGWSFFLKNLRR----HVTKGISVCMVSDRHESIKSAFNDPRNGWQAT-- 133
AF +V+ E + W +FL L H + + ++SDR + I +G +A+
Sbjct: 2 AFGVVDEENDDNWMWFLSELHNLLEIHTENMLRLTILSDRQKGIV-------DGVEASFP 160
Query: 134 GSAHVYCIRHIKQNFMRTIKDGDLKDVVNNMGYALNVPLFNYYRGVIQEANQRALDWVDN 193
+ H +C++H+ +F + + L +++ AL N + + + +D+
Sbjct: 161 TAFHGFCMQHLSDSFRKEFNNTMLVNLLWEAANALTE--LNLKQRFWRLKRYHKMLHIDS 334
Query: 194 IPKEKWTQAYDEGRRWGHMTSNIVES 219
W AY EG R+GH+T+NIVES
Sbjct: 335 RIPSLWATAYFEGHRFGHLTANIVES 412
>TC220322
Length = 1264
Score = 35.4 bits (80), Expect(2) = 3e-06
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +1
Query: 357 ESVYSIYNTAFKVVHDKSYWLP--YDGPVICHNPNMRRLKKGRPNSTRIRTEMDEEV--- 411
E+ Y + V YW Y PV P +R+++GRP R R+ ++ V
Sbjct: 559 EAYNKTYQHFIEPVQGPQYWAQTQYTHPV----PPYKRVQRGRPKKNRKRSVDEDNVTGH 726
Query: 412 -VERTPTPRRCGLCRHTGHIRRNCPSL 437
++R CG C T H R+C ++
Sbjct: 727 KLKRKLAEFTCGRCGQTNHNIRSCKNI 807
Score = 33.5 bits (75), Expect(2) = 3e-06
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 3/168 (1%)
Frame = +2
Query: 173 FNYYRGVIQEANQRALDWVDNIPKEKWTQA-YDEGRRWGHMTSNIVESWNSVFKGTRNLP 231
F + ++ N +A ++++ PK+ WT+A + + ++ +N E +N R P
Sbjct: 32 FEGHMAHLKTINCQAWEYLNKWPKQAWTKAHFSTIPKVDNICNNTCEVFNFRILQYRCKP 211
Query: 232 VTPIVQSTYYRLACLFADRAQKAFARVGSGDLFSEYCQNAIQDDIVKSNTHHVEQFDRER 291
+ +++ + A R K + G L +Q ++ H Q+
Sbjct: 212 IITMLEEIRSYIMRTMAARKVKLSGKPGPLCL--------VQYKRLEKEFHFANQWT--- 358
Query: 292 YTFSVRETVNYREGRPMGTFKVDLR-AGW-CDCGKFQALHLPCSHVIA 337
+ + R M KV++ AGW C CG +Q +PC H IA
Sbjct: 359 -PIWCGDNMGLRYEVHMWGNKVEVNLAGWTCTCGVWQLTGMPCRHAIA 499
>TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transposase
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (12%)
Length = 617
Score = 45.1 bits (105), Expect = 6e-05
Identities = 33/127 (25%), Positives = 44/127 (33%), Gaps = 5/127 (3%)
Frame = +2
Query: 313 VDLRAGWCDCGKFQALHLPCSHVIAACSSFRHDYTTLIPHVFKNESVYSIYNTAFKVVHD 372
V++ + C C +Q +PCSH AA S R D F S Y +
Sbjct: 20 VNIGSHSCSCRDWQLNGIPCSHAAAALISCRKDVYAFSQKCFTAASFRDTYAETIHPIPG 199
Query: 373 KSYW-----LPYDGPVICHNPNMRRLKKGRPNSTRIRTEMDEEVVERTPTPRRCGLCRHT 427
K W D ++ P R GRP M + + R C C T
Sbjct: 200 KLEWSKTGNSSMDDNILVVRPPKLRRPPGRPEK-----RMCVDDLNREKHTVHCSRCNQT 364
Query: 428 GHIRRNC 434
GH +R C
Sbjct: 365 GHYKRTC 385
>BM108247 weakly similar to PIR|H84710|H847 Mutator-like transposase
[imported] - Arabidopsis thaliana, partial (4%)
Length = 265
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +2
Query: 153 KDGDLKDVVNNMGYALNVPLFNYYRGVIQEANQRALDWVDNIPKEKWTQAYDEGRRWGHM 212
K+ L ++ +A F G I+E + A W+ +W + +G R+GH+
Sbjct: 2 KNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFXPSQWALVHFKGTRFGHL 181
Query: 213 TSNIVESWNSVFKGTRNLPVTPIV 236
+SNI E +N TR LP+ ++
Sbjct: 182 SSNI-EEFNKWILDTRELPIIXVI 250
>TC232149
Length = 1005
Score = 32.0 bits (71), Expect = 0.57
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = -1
Query: 173 FNYYRGVIQEANQRALDWVDNIPKEKWTQAY 203
FN V++ N++A ++D P+E WT+AY
Sbjct: 585 FNVIMKVVKRMNEKAWAYLDKGPRESWTKAY 493
>TC215912 similar to GB|AAS09986.1|41618940|AY519516 MYB transcription factor
{Arabidopsis thaliana;} , partial (34%)
Length = 633
Score = 31.6 bits (70), Expect = 0.74
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 412 VERTPTPRRCGLCRHTGHIRRNCPS 436
++ P RRC C H GH R CP+
Sbjct: 203 LDPVPMTRRCSHCSHNGHNSRTCPN 277
>TC218865 similar to UP|O82651 (O82651) Squamosa-promoter binding
protein-like 1, partial (7%)
Length = 457
Score = 31.2 bits (69), Expect = 0.97
Identities = 15/46 (32%), Positives = 26/46 (55%)
Frame = +3
Query: 380 DGPVICHNPNMRRLKKGRPNSTRIRTEMDEEVVERTPTPRRCGLCR 425
D P + N ++ + R S+++ + + E +E T PRRCGLC+
Sbjct: 162 DIPGTLVDSNTKQKQSDRHRSSKV-SSLQTEKIETTAMPRRCGLCQ 296
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Frame = +1
Query: 313 VDLRAGWCDCGKFQALHLPCSHVIAA-----------CSSFRHDYTTLIPHVFKNESVYS 361
VD+ C C +Q +PC H IA CS + +T + ES++
Sbjct: 67 VDIDNWDCSCKGWQLTGVPCCHAIAVFECVGRSPYDYCSRY---FTVENYRLTYAESIHP 237
Query: 362 IYNTAFKVVHDKSYWLPYDGPVICHNPNMRRLKKGRPNSTRIRTEMDEEVVERTPTPRRC 421
+ N V +S L V+ P +R GRP ++ E ++ +C
Sbjct: 238 VPNVDKPPVQGESTAL-----VMVIPPPTKR-PPGRPKMKQV------ESIDIIKRQLQC 381
Query: 422 GLCRHTGHIRRNC 434
C+ GH R+ C
Sbjct: 382 SKCKGLGHNRKTC 420
>TC215913 similar to GB|AAS09986.1|41618940|AY519516 MYB transcription factor
{Arabidopsis thaliana;} , partial (66%)
Length = 1545
Score = 29.3 bits (64), Expect = 3.7
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 419 RRCGLCRHTGHIRRNCPS 436
RRC C H GH R CP+
Sbjct: 215 RRCSHCSHNGHNSRTCPN 268
>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
Length = 1138
Score = 28.9 bits (63), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 419 RRCGLCRHTGHIRRNCPS 436
+ C CR TGH+ R+CP+
Sbjct: 644 KACNNCRKTGHLARDCPN 697
Score = 28.9 bits (63), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = +2
Query: 416 PTPRRCGLCRHTGHIRRNCPSLN 438
P C LC +GH+ R CP N
Sbjct: 692 PNDPICNLCNVSGHVARQCPKAN 760
>TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (42%)
Length = 655
Score = 28.9 bits (63), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 419 RRCGLCRHTGHIRRNCPS 436
+ C CR TGH+ R+CP+
Sbjct: 129 KACNNCRKTGHLARDCPN 182
Score = 28.9 bits (63), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = +3
Query: 416 PTPRRCGLCRHTGHIRRNCPSLN 438
P C LC +GH+ R CP N
Sbjct: 177 PNDPICNLCNVSGHVARQCPKAN 245
>TC205359 homologue to GB|AAM64579.1|21592630|AY087018 silencing group B
protein {Arabidopsis thaliana;} , partial (92%)
Length = 830
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/82 (25%), Positives = 37/82 (44%), Gaps = 2/82 (2%)
Frame = +1
Query: 44 YCKPVVHVDGTWLYDKYKGTLLLAVAQDGNNKTIPIAFALVEGETKE--GWSFFLKNLRR 101
+C P + +LY LL VA+D N + + A +E ET + G L LR
Sbjct: 136 FCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETTDCHGHITSLAVLRT 315
Query: 102 HVTKGISVCMVSDRHESIKSAF 123
H G++ +++ +++ F
Sbjct: 316 HRKLGLATKLMTAAQNAMEQVF 381
>TC207337 similar to UP|Q6K270 (Q6K270) Nodulation receptor kinase-like
protein, partial (39%)
Length = 916
Score = 28.5 bits (62), Expect = 6.3
Identities = 16/53 (30%), Positives = 25/53 (46%)
Frame = -3
Query: 334 HVIAACSSFRHDYTTLIPHVFKNESVYSIYNTAFKVVHDKSYWLPYDGPVICH 386
HV + CS+ I H +N SVYS ++ H S+ + +GP C+
Sbjct: 560 HVRSICSNGGCTLKRQIKHFHQNISVYSFFH*RIHKFHHTSFIILPEGPSECN 402
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,505,870
Number of Sequences: 63676
Number of extensions: 360321
Number of successful extensions: 1801
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1797
length of query: 440
length of database: 12,639,632
effective HSP length: 100
effective length of query: 340
effective length of database: 6,272,032
effective search space: 2132490880
effective search space used: 2132490880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC126012.8