TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126011.4 + phase: 0 /pseudo
         (133 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208159 similar to UP|Q39379 (Q39379) Non intermediate filament...    26  4.8
BU763938 similar to GP|21537026|gb| beta-N-acetylhexosaminidase-...    25  8.1
TC234485 similar to UP|Q6UY78 (Q6UY78) YDA, partial (16%)              25  8.1
TC208475 similar to UP|AKR_ARATH (Q05753) Ankyrin repeat protein...    25  8.1

>TC208159 similar to UP|Q39379 (Q39379) Non intermediate filament IFA binding
           protein (Fragment), partial (19%)
          Length = 652

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -3

Query: 73  NYLLHAIDRKIIETILEKNTLKKIWASMR 101
           NY+L + D KI+  + +K  +   W SMR
Sbjct: 644 NYILSSYDTKILNLLAQK*KISYKWNSMR 558


>BU763938 similar to GP|21537026|gb| beta-N-acetylhexosaminidase-like protein
           {Arabidopsis thaliana}, partial (7%)
          Length = 443

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (55%), Gaps = 4/32 (12%)
 Frame = +1

Query: 75  LLHAIDRKIIETILEKN----TLKKIWASMRG 102
           L+HA+D     +IL  +    T K +W +MRG
Sbjct: 253 LVHAVDESYTLSILPSSCATLTAKTVWGAMRG 348


>TC234485 similar to UP|Q6UY78 (Q6UY78) YDA, partial (16%)
          Length = 543

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 1/65 (1%)
 Frame = +1

Query: 39  LVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIE-TILEKNTLKKIW 97
           L D G+A+  +G     + + TPY M  + +K  N    A+D   +  T+LE  T K  W
Sbjct: 109 LADFGMAKHITGQSCPLSFKGTPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPW 288

Query: 98  ASMRG 102
               G
Sbjct: 289 FQYEG 303


>TC208475 similar to UP|AKR_ARATH (Q05753) Ankyrin repeat protein,
           chloroplast precursor (AKRP), partial (51%)
          Length = 1057

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 65  MLKYLKVKNYLLHAIDRKI 83
           +L Y+K+K Y+L+ I RKI
Sbjct: 931 VLYYIKIKMYILNVIGRKI 987


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.333    0.147    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,074,447
Number of Sequences: 63676
Number of extensions: 54482
Number of successful extensions: 315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of query: 133
length of database: 12,639,632
effective HSP length: 87
effective length of query: 46
effective length of database: 7,099,820
effective search space: 326591720
effective search space used: 326591720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (25.0 bits)