BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.4 - phase: 0
(162 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207894 similar to UP|O81500 (O81500) F9D12.16 protein (At5g263... 95 1e-20
TC216363 similar to UP|Q7YHL4 (Q7YHL4) NADH dehydrogenase subuni... 93 5e-20
TC209188 similar to UP|BCP_PEA (Q41001) Blue copper protein prec... 92 8e-20
TC207895 similar to UP|O81500 (O81500) F9D12.16 protein (At5g263... 92 1e-19
TC226353 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial ... 91 2e-19
CD409344 91 3e-19
TC218114 similar to UP|BCP_PEA (Q41001) Blue copper protein prec... 88 2e-18
TC231411 similar to GB|AAP21370.1|30102904|BT006562 At3g27200 {A... 87 3e-18
TC214395 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like ... 86 8e-18
TC214067 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like ... 83 5e-17
TC204673 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein... 83 7e-17
TC204674 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein... 82 9e-17
CD404820 weakly similar to SP|Q41001|BCP_P Blue copper protein p... 80 6e-16
TC225573 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein... 79 9e-16
TC225574 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein... 77 3e-15
TC219353 weakly similar to UP|Q8L555 (Q8L555) Uclacyanin 3-like ... 76 8e-15
TC226352 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial ... 74 2e-14
TC227855 weakly similar to GB|AAP88350.1|32815931|BT009716 At3g2... 72 1e-13
TC217028 weakly similar to UP|Q39370 (Q39370) Lamin, partial (80%) 72 2e-13
TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier pr... 69 7e-13
>TC207894 similar to UP|O81500 (O81500) F9D12.16 protein (At5g26330), partial
(56%)
Length = 755
Score = 95.1 bits (235), Expect = 1e-20
Identities = 52/142 (36%), Positives = 77/142 (53%), Gaps = 2/142 (1%)
Frame = +2
Query: 6 VVLILSISMVLLSSVAIAATDYIVGDDKGWTV--DFDYTQWAQDKVFRVGDNLVFNYDPS 63
VVL + +++V +S A+ Y VGD GWT DY +WA K F++GD ++F Y+
Sbjct: 68 VVLFIVMTIVKVSYAAV----YKVGDSAGWTTLGTIDYRKWAATKNFQIGDTIIFEYNAK 235
Query: 64 RHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITV 123
HNV +V ++++C +TGKD I + G ++ CGV HC A Q K+ I V
Sbjct: 236 FHNVMRVTHAMYKTCNASSPIATFTTGKDSINITNHGHHFFFCGVPGHCQAGQ-KVDINV 412
Query: 124 LAEGAPAPSPPPSSDAHSVVSS 145
L A AP+P S+ A V +
Sbjct: 413 LKVSAEAPTPSGSALASPTVQA 478
>TC216363 similar to UP|Q7YHL4 (Q7YHL4) NADH dehydrogenase subunit 1, partial
(5%)
Length = 854
Score = 93.2 bits (230), Expect = 5e-20
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = +1
Query: 10 LSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFK 69
L+ +++LL S + ATD+IVG ++GW F+YT WA + F VGD + F Y +++NVF+
Sbjct: 145 LTCALLLLFSAVVTATDHIVGANRGWNPGFNYTLWANNHTFYVGDLISFRYQKNQYNVFE 324
Query: 70 VNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAEGAP 129
VN T + +CT S+GKD I L R +++CG S ++ +V+ P
Sbjct: 325 VNQTGYDNCTTEGAVGNWSSGKDFIPLNKAKRYYFICGNGQCFSGMKVSVVV------HP 486
Query: 130 APSPPPSSDA--HSVVSSLFGVVM 151
P PP S+ A HS S V++
Sbjct: 487 LPPPPTSAVAAQHSSPKSASPVLL 558
>TC209188 similar to UP|BCP_PEA (Q41001) Blue copper protein precursor,
partial (57%)
Length = 597
Score = 92.4 bits (228), Expect = 8e-20
Identities = 54/171 (31%), Positives = 91/171 (52%), Gaps = 10/171 (5%)
Frame = +1
Query: 1 MASSRVVLILSISMVLLSSVAI------AATDYIVGDDKGWTVDFDYTQWAQDKVFRVGD 54
++ S ++ S +++L S +AI AT Y VGD GW + DY+ W DK+F VGD
Sbjct: 37 LSRSHKIMAFSSALILWSLLAINMALPTLATVYTVGDTSGWAIGTDYSTWTGDKIFSVGD 216
Query: 55 NLVFNYDPSRHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSA 114
+L FNY + H V +V + ++SCT S+G I LK+ G +++C V HCS
Sbjct: 217 SLAFNYG-AGHTVDEVKESDYKSCTAGNSISTDSSGATTIALKSAGTHYFICSVPGHCSG 393
Query: 115 RQMKLVITV----LAEGAPAPSPPPSSDAHSVVSSLFGVVMAIMVAIAVIF 161
MKL +TV ++ P S ++ ++S +S ++A+ + ++ +
Sbjct: 394 -GMKLAVTVKSGKASDATPTTSTTTATKSNSSSASSVSPIVAMFIVSSISY 543
>TC207895 similar to UP|O81500 (O81500) F9D12.16 protein (At5g26330), partial
(53%)
Length = 858
Score = 91.7 bits (226), Expect = 1e-19
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 19/165 (11%)
Frame = +3
Query: 14 MVLLSSVAIA-ATDYIVGDDKGWTV--DFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKV 70
M+++++ ++ A + VGD GWT+ + DY +WA K F+VGD ++F Y+ HNV +V
Sbjct: 162 MMMMTAFQVSHAAVHKVGDSAGWTIIGNIDYKKWAATKNFQVGDTIIFEYNAKFHNVMRV 341
Query: 71 NGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMK--LVITVLAEGA 128
+++SC +STG D I++ G +++CG+ HC A Q V+ V A A
Sbjct: 342 THAMYKSCNASSPLTTMSTGNDTIKITNYGHHFFLCGIPGHCQAGQKVDINVVKVSAAAA 521
Query: 129 PA--------------PSPPPSSDAHSVVSSLFGVVMAIMVAIAV 159
P+ P+P P++ A +V G+ + ++A+A+
Sbjct: 522 PSPTSAMASPVPPANVPAPSPNNAAPFIVVKGAGIALMTLLALAL 656
>TC226353 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (26%)
Length = 1341
Score = 90.9 bits (224), Expect = 2e-19
Identities = 50/139 (35%), Positives = 73/139 (51%), Gaps = 4/139 (2%)
Frame = +3
Query: 1 MASSRVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFD----YTQWAQDKVFRVGDNL 56
+A +R +L++ ++ L + A T ++VGD GW + YT WA +K F V D L
Sbjct: 72 IAMARNLLLVLFAVATLLHGSAAQTRHMVGDATGWIIPAGGAATYTAWASNKTFTVNDTL 251
Query: 57 VFNYDPSRHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQ 116
VFN+ +HNV KV + F +C L++G + L G ++Y+C V HCSA Q
Sbjct: 252 VFNFATGQHNVAKVTKSAFDACNGGSAVFTLTSGPATVTLNETGEQYYICSVGSHCSAGQ 431
Query: 117 MKLVITVLAEGAPAPSPPP 135
KL I V + PSP P
Sbjct: 432 -KLAINVNRASSTGPSPAP 485
Score = 74.7 bits (182), Expect = 2e-14
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = +3
Query: 27 YIVGDDKGWTVDFD---YTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQSCTFPPK 83
+IVG+ GW V + YT WA K FRVGD LVFNY + HNV +V F +C+
Sbjct: 618 FIVGETAGWIVPGNASFYTAWASGKNFRVGDVLVFNYASNTHNVEEVTKANFDACSSASP 797
Query: 84 NEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAEGAPAPSPPPSSDAHSVV 143
+T + L G+ +++CG+ HC Q KL I V G+ +PP ++ +
Sbjct: 798 IATFTTPPARVTLNKSGQHFFICGIPGHCLGGQ-KLAINV--TGSSTATPPSAAAPPTTP 968
Query: 144 SS 145
SS
Sbjct: 969 SS 974
>CD409344
Length = 438
Score = 90.5 bits (223), Expect = 3e-19
Identities = 49/141 (34%), Positives = 75/141 (52%), Gaps = 2/141 (1%)
Frame = -2
Query: 5 RVVLILSISMVLLSSVAIAATDYIVGDDKGWTV--DFDYTQWAQDKVFRVGDNLVFNYDP 62
+ V+ L ++ +S+ A+ + VGD GWT+ + DY +WA K F+VGD ++F Y+
Sbjct: 413 KAVVFLMMTAFQVSNSAV----HKVGDSAGWTIIGNIDYKKWAATKNFQVGDTIIFEYNA 246
Query: 63 SRHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVIT 122
HNV +V +++SC +STG D I++ G ++CGV HC A Q +
Sbjct: 245 KFHNVMRVTHGMYKSCNASSPLTRMSTGNDTIKITNYGHHLFLCGVPGHCQAGQKVDINV 66
Query: 123 VLAEGAPAPSPPPSSDAHSVV 143
V A AP+P P S S V
Sbjct: 65 VKKVSAEAPTPSPISAMASPV 3
>TC218114 similar to UP|BCP_PEA (Q41001) Blue copper protein precursor,
partial (57%)
Length = 901
Score = 87.8 bits (216), Expect = 2e-18
Identities = 53/139 (38%), Positives = 74/139 (53%)
Frame = +3
Query: 1 MASSRVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNY 60
MASS V L+L + + L + A + VGD GW + DY+ WA +VGD+LVFNY
Sbjct: 51 MASS-VALVLGLCLALNMVLPTRAATHTVGDTSGWALGADYSTWASGLKLKVGDSLVFNY 227
Query: 61 DPSRHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLV 120
+ H V +V + ++SCT S+G I LKT G +++C HC MKL
Sbjct: 228 G-AGHTVDEVKESDYKSCTTGNSLSTDSSGTTTITLKTAGTHYFICASPGHCDG-GMKLA 401
Query: 121 ITVLAEGAPAPSPPPSSDA 139
+ V A+ A AP+ PS A
Sbjct: 402 VKVKAKKASAPATAPSPAA 458
>TC231411 similar to GB|AAP21370.1|30102904|BT006562 At3g27200 {Arabidopsis
thaliana;} , partial (57%)
Length = 855
Score = 87.0 bits (214), Expect = 3e-18
Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Frame = +2
Query: 8 LILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNV 67
+ L++ L++ A AA ++VG +GW D+ W + F+VGD LVF Y S H+V
Sbjct: 77 IFLALIATLIAKEAFAA-QHVVGGSQGWDQSTDFKSWTSGQTFKVGDKLVFKYS-SFHSV 250
Query: 68 FKV-NGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAE 126
++ N + +++C ++LSTG D+++L G +++ CG HCS + MK+ IT+
Sbjct: 251 VELGNESAYKNCDISSPVQSLSTGNDVVKLDKPGTRYFTCGTLGHCS-QGMKVKITIRKG 427
Query: 127 GAPAPSPPPSS 137
AP+P+ P++
Sbjct: 428 NAPSPALSPAT 460
>TC214395 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like protein,
partial (44%)
Length = 652
Score = 85.9 bits (211), Expect = 8e-18
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 25/161 (15%)
Frame = +2
Query: 26 DYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQSCTFPPKNE 85
D+ VGD GW + +Y WA K FR+GDNLVF YD S H V +V+ + + SC+ +
Sbjct: 11 DHEVGDTGGWALGVNYNTWASGKTFRIGDNLVFKYD-STHQVDEVDESGYNSCSSSNIIK 187
Query: 86 ALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAEGAPA------------PSP 133
G I+L + G+++++C ++ HC A MKL I V+A P PSP
Sbjct: 188 NYKDGNTKIELTSTGKRYFLCPISGHC-AGGMKLQINVVAGTPPTTPSGTPPTTPSNPSP 364
Query: 134 PPSSDAHS-------------VVSSLFGVVMAIMVAIAVIF 161
P SD+ S VSS G+++ A A++F
Sbjct: 365 SPPSDSGSTNTTSPPKPSGAVTVSSGIGLLVGSFFASAIMF 487
>TC214067 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like protein,
partial (50%)
Length = 948
Score = 83.2 bits (204), Expect = 5e-17
Identities = 44/124 (35%), Positives = 67/124 (53%)
Frame = +1
Query: 11 SISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKV 70
S ++LL+ + D+ VGD GW + +Y WA K F VGD LVF YD S H V +V
Sbjct: 109 SFLVLLLAFPTVFGADHEVGDTSGWALGVNYNTWASGKTFTVGDTLVFKYD-STHQVDEV 285
Query: 71 NGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAEGAPA 130
+ + + SC+ + G I+L + G+++++C ++ HC A MKL I V A
Sbjct: 286 DESGYNSCSSSNSIKNYQDGNSKIELTSPGKRYFLCPISGHC-AGGMKLQINVAAASGTP 462
Query: 131 PSPP 134
P+ P
Sbjct: 463 PTTP 474
>TC204673 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(98%)
Length = 582
Score = 82.8 bits (203), Expect = 7e-17
Identities = 49/118 (41%), Positives = 67/118 (56%)
Frame = +3
Query: 4 SRVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPS 63
S VVL+L ++L S +A AAT Y VGD GWT F+ W + K+FR GD L FNY P
Sbjct: 63 SAVVLLLCF-LLLHSQMARAAT-YTVGDSGGWT--FNTVAWPKGKLFRAGDTLAFNYSPG 230
Query: 64 RHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVI 121
HNV VN + SC P + +G D I+L +G+ +++C HC + MK+ I
Sbjct: 231 THNVVAVNKAGYDSCKTPRGAKVYKSGTDQIRL-AKGQNYFICNYVGHCES-GMKIAI 398
>TC204674 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(98%)
Length = 635
Score = 82.4 bits (202), Expect = 9e-17
Identities = 50/118 (42%), Positives = 66/118 (55%)
Frame = +2
Query: 4 SRVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPS 63
S VVL+L +VL S +A AAT Y VGD +GWT F+ W Q K F GD L FNY P
Sbjct: 71 SAVVLLLCF-LVLQSEMARAAT-YRVGDSRGWT--FNTVTWPQGKRFTAGDTLAFNYSPG 238
Query: 64 RHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVI 121
HNV V+ + SC P + +GKD I+L G+ +++C HC + MK+ I
Sbjct: 239 AHNVVAVSKAGYDSCKTPRGAKVYRSGKDQIRL-ARGQNYFICNYVGHCES-GMKIAI 406
>CD404820 weakly similar to SP|Q41001|BCP_P Blue copper protein precursor.
[Garden pea] {Pisum sativum}, partial (22%)
Length = 632
Score = 79.7 bits (195), Expect = 6e-16
Identities = 52/149 (34%), Positives = 69/149 (45%), Gaps = 10/149 (6%)
Frame = -3
Query: 23 AATDYIVGDDKGWTVDFD---YTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQSCT 79
A T Y+VGD GW V D Y WA DK F VGD L F + HNV +V+ + SC+
Sbjct: 627 AQTSYVVGDGTGWRVPQDASTYHNWASDKNFTVGDTLSFIFQTGLHNVIEVSEESYNSCS 448
Query: 80 FP-PKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAEGAPAP------S 132
P +TG + L G +Y+C +HC+ Q +L I+V P
Sbjct: 447 SANPIGTTYNTGPANVTLNRGGEHYYICSFGNHCNNGQ-RLAISVSGSSTAFPPATTTAP 271
Query: 133 PPPSSDAHSVVSSLFGVVMAIMVAIAVIF 161
PPPSS S SS V+ + A +F
Sbjct: 270 PPPSS---SAPSSFHTTVLPFLFLSAFVF 193
>TC225573 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(82%)
Length = 863
Score = 79.0 bits (193), Expect = 9e-16
Identities = 46/123 (37%), Positives = 69/123 (55%)
Frame = +1
Query: 2 ASSRVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYD 61
++S +++ +S++ L A AAT Y VG GWT F+ W K FR GD L+FNYD
Sbjct: 94 SASLPIVVTVVSLLCLLERANAAT-YSVGGPGGWT--FNTNAWPNGKRFRAGDILIFNYD 264
Query: 62 PSRHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVI 121
+ HNV V+ + + SC P + S+GKD I+L G+ +++C HC + MK+ I
Sbjct: 265 STTHNVVAVDRSGYNSCKTPGGAKVFSSGKDQIKL-ARGQNYFICNYPGHCES-GMKVAI 438
Query: 122 TVL 124
L
Sbjct: 439 NAL 447
>TC225574 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(83%)
Length = 868
Score = 77.4 bits (189), Expect = 3e-15
Identities = 43/119 (36%), Positives = 65/119 (54%)
Frame = +1
Query: 6 VVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRH 65
VV ++S+ +L+ A Y VG GWT F+ W + K FR GD L+FNYD + H
Sbjct: 127 VVTVVSLLCLLVLLERADAATYTVGGPGGWT--FNTNAWPKGKRFRAGDILIFNYDSTTH 300
Query: 66 NVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVL 124
NV V+ + + SC P + S+GKD I+L G+ +++C HC + MK+ I +
Sbjct: 301 NVVAVDRSGYNSCKTPGGAKVFSSGKDQIKL-ARGQNYFICNYPGHCES-GMKVAINAV 471
>TC219353 weakly similar to UP|Q8L555 (Q8L555) Uclacyanin 3-like protein-like
protein, partial (44%)
Length = 713
Score = 75.9 bits (185), Expect = 8e-15
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Frame = +2
Query: 8 LILSISMVLLSSVAIAATDYIVGDDKG-WTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHN 66
L+ +S + + +AT+YIVG G W + + WA ++F VGD+LVF Y P+ H+
Sbjct: 68 LMFRVSFMAVLIKLASATNYIVGGPSGGWDTNSNLQSWASSQIFSVGDSLVFQYPPN-HD 244
Query: 67 VFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAE 126
V +V + SC ++ + G I L G+++++CG HCS + MK+ I LA
Sbjct: 245 VVEVTKADYDSCQPTNPIQSYNDGATTIPLTLPGKRYFICGTIGHCS-QGMKVEIDTLAS 421
Query: 127 G----APAPSPPPSS 137
PA SP S+
Sbjct: 422 ATNSVTPAASPEDST 466
>TC226352 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (27%)
Length = 795
Score = 74.3 bits (181), Expect = 2e-14
Identities = 50/151 (33%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Frame = +1
Query: 27 YIVGDDKGWTVDFD---YTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQSCTFPPK 83
Y VG+ GW V + Y WA K F+VGD LVFNY + HNV +V + SC+
Sbjct: 163 YTVGETAGWIVPGNASFYPAWASAKNFKVGDILVFNYPSNAHNVEEVTKANYDSCSSASP 342
Query: 84 NEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITV---------LAEGAPAP--- 131
+T + L G +Y+CG+ HC Q KL I V +P+P
Sbjct: 343 IATFTTPPARVPLSKSGEHYYICGIPGHCLGGQ-KLSINVTGGSTATAPTTPSSPSPSGA 519
Query: 132 -SPPPSSDAHSVVSSLFGVVMAIMVAIAVIF 161
SPPP + A + + L GV ++ A F
Sbjct: 520 VSPPPQNSAAASL-GLVGVSATLLSVAAAFF 609
>TC227855 weakly similar to GB|AAP88350.1|32815931|BT009716 At3g20570
{Arabidopsis thaliana;} , partial (44%)
Length = 988
Score = 72.0 bits (175), Expect = 1e-13
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Frame = +1
Query: 23 AATDYIVGDDKGWTVDFD-----YTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQS 77
A+ D++VG KGW+V D + QWA+ F++GD+LVFNY + +V V + S
Sbjct: 145 ASYDFVVGGQKGWSVPNDPSFNPFNQWAEKSRFQIGDSLVFNYQSGQDSVLYVKSEDYAS 324
Query: 78 CTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAE---------GA 128
C S G + +L G +++ G D+C+ + KL + VLA+ A
Sbjct: 325 CNIDSPYAKYSDGHTVYKLNQSGPHFFISGNKDNCNKNE-KLTVIVLADRNKNTNQTTTA 501
Query: 129 PAPSPPPSS 137
PSP SS
Sbjct: 502 SPPSPQTSS 528
>TC217028 weakly similar to UP|Q39370 (Q39370) Lamin, partial (80%)
Length = 862
Score = 71.6 bits (174), Expect = 2e-13
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Frame = +1
Query: 5 RVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSR 64
RV+L+L VLL +AT + VG+++ W + +YT+WA+ K F +GD L F YD ++
Sbjct: 109 RVLLLLLAFTVLLMLPEASATKFTVGNNQFWNPNINYTEWAKGKHFYLGDWLYFVYDRNQ 288
Query: 65 HNVFKVNGTLFQSCT--FPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVIT 122
+V +VN T +++C P N G+D++ L + +Y+ C + MK+ +
Sbjct: 289 ASVLEVNKTDYETCNSDHPLTNWTRGAGRDVVPLNVT-KTYYIISGRGFCFS-GMKIAVH 462
Query: 123 VLAEGAPAPSPPPSSDAHSVVSSLF 147
V P PP ++ S +LF
Sbjct: 463 V----EKLPPPPKAAPVKSAAPTLF 525
>TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier protein, partial
(40%)
Length = 2164
Score = 69.3 bits (168), Expect = 7e-13
Identities = 36/93 (38%), Positives = 50/93 (53%)
Frame = +3
Query: 29 VGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQSCTFPPKNEALS 88
VGD GWT F+ W + K+FR GD L FNY P HNV VN + SC P +
Sbjct: 1737 VGDSGGWT--FNTVAWPKGKLFRAGDTLAFNYSPGTHNVVAVNKAGYDSCKTPRGAKVYK 1910
Query: 89 TGKDIIQLKTEGRKWYVCGVADHCSARQMKLVI 121
+G D I+L +G+ +++C C + MK+ I
Sbjct: 1911 SGTDQIRL-AKGQNYFICNYVGPCES-GMKIAI 2003
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,791,366
Number of Sequences: 63676
Number of extensions: 122350
Number of successful extensions: 1246
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of query: 162
length of database: 12,639,632
effective HSP length: 90
effective length of query: 72
effective length of database: 6,908,792
effective search space: 497433024
effective search space used: 497433024
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC126009.4