BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.3 - phase: 0 /pseudo
(60 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216363 similar to UP|Q7YHL4 (Q7YHL4) NADH dehydrogenase subuni... 50 2e-07
TC209188 similar to UP|BCP_PEA (Q41001) Blue copper protein prec... 50 2e-07
TC219078 47 2e-06
AW832491 45 1e-05
TC214395 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like ... 44 2e-05
TC214067 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like ... 44 2e-05
TC231411 similar to GB|AAP21370.1|30102904|BT006562 At3g27200 {A... 43 3e-05
TC218257 42 6e-05
TC218258 42 8e-05
TC234063 weakly similar to UP|Q6V5D0 (Q6V5D0) Cu2+ plastocyanin-... 42 8e-05
TC234005 42 8e-05
TC204673 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein... 41 1e-04
TC204674 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein... 41 1e-04
TC217028 weakly similar to UP|Q39370 (Q39370) Lamin, partial (80%) 41 1e-04
TC218114 similar to UP|BCP_PEA (Q41001) Blue copper protein prec... 41 1e-04
TC207895 similar to UP|O81500 (O81500) F9D12.16 protein (At5g263... 40 2e-04
CD409344 40 3e-04
CD404820 weakly similar to SP|Q41001|BCP_P Blue copper protein p... 39 4e-04
TC226353 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial ... 39 4e-04
BE058072 homologue to GP|11994144|dbj contains similarity to nod... 38 0.001
>TC216363 similar to UP|Q7YHL4 (Q7YHL4) NADH dehydrogenase subunit 1, partial
(5%)
Length = 854
Score = 50.4 bits (119), Expect = 2e-07
Identities = 21/40 (52%), Positives = 28/40 (69%)
Frame = +1
Query: 14 MVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGD 53
++L S+V ATDHIVG ++GW F+YT WA + F VGD
Sbjct: 160 LLLFSAVVTATDHIVGANRGWNPGFNYTLWANNHTFYVGD 279
>TC209188 similar to UP|BCP_PEA (Q41001) Blue copper protein precursor,
partial (57%)
Length = 597
Score = 50.1 bits (118), Expect = 2e-07
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MA S +++ S+ + ++ +AT + VGD GW + DY+ W DK+F VGD+L
Sbjct: 58 MAFSSALILWSLLAINMALPTLATVYTVGDTSGWAIGTDYSTWTGDKIFSVGDSL 222
>TC219078
Length = 758
Score = 47.0 bits (110), Expect = 2e-06
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +3
Query: 12 ISMVLLSSVAIATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
++MV + VA ATD+IVG+ GW+V + YT WA K F VGDNL
Sbjct: 96 VAMVFIIGVAEATDYIVGEGFGWSVPSNESFYTDWASTKRFFVGDNL 236
>AW832491
Length = 285
Score = 44.7 bits (104), Expect = 1e-05
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 23 ATDHIVGDDKGWTVDFDYTQWAQDKVFRVGD 53
ATDHIVG ++GW F+YT WA + F VGD
Sbjct: 8 ATDHIVGANRGWNPGFNYTLWANNHTFYVGD 100
>TC214395 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like protein,
partial (44%)
Length = 652
Score = 43.9 bits (102), Expect = 2e-05
Identities = 17/31 (54%), Positives = 20/31 (63%)
Frame = +2
Query: 25 DHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
DH VGD GW + +Y WA K FR+GDNL
Sbjct: 11 DHEVGDTGGWALGVNYNTWASGKTFRIGDNL 103
>TC214067 weakly similar to UP|Q949E8 (Q949E8) Uclacyanin 3-like protein,
partial (50%)
Length = 948
Score = 43.5 bits (101), Expect = 2e-05
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
+A+S +VL+L+ V DH VGD GW + +Y WA K F VGD L
Sbjct: 100 IAASFLVLLLAFPTVF------GADHEVGDTSGWALGVNYNTWASGKTFTVGDTL 246
>TC231411 similar to GB|AAP21370.1|30102904|BT006562 At3g27200 {Arabidopsis
thaliana;} , partial (57%)
Length = 855
Score = 43.1 bits (100), Expect = 3e-05
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 8 LILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
+ L++ L++ A A H+VG +GW D+ W + F+VGD L +S
Sbjct: 77 IFLALIATLIAKEAFAAQHVVGGSQGWDQSTDFKSWTSGQTFKVGDKLVFKYS 235
>TC218257
Length = 971
Score = 42.0 bits (97), Expect = 6e-05
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 VVLILSISMVLLSS--VAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
+V I+++ + L V H+VG D+GW D W+ +VFRVGD + +S
Sbjct: 228 IVFIVALVAICLGGKWVEAQVHHVVGADRGWDQTSDLVSWSASRVFRVGDQIWLTYS 398
>TC218258
Length = 713
Score = 41.6 bits (96), Expect = 8e-05
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 6 VVLILSISMVLLSS--VAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
++ I+++ + L V H+VG D+GW D WA +VFRVGD + +S
Sbjct: 85 MIFIVALVAICLGGKWVEAQVHHVVGADRGWDQTSDLVSWAAGRVFRVGDQIWLTYS 255
>TC234063 weakly similar to UP|Q6V5D0 (Q6V5D0) Cu2+ plastocyanin-like,
partial (59%)
Length = 794
Score = 41.6 bits (96), Expect = 8e-05
Identities = 19/56 (33%), Positives = 30/56 (52%)
Frame = +2
Query: 5 RVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
+++L+ S+ ++ AT + VGD GW + + W DK FRVGD L +S
Sbjct: 26 KLLLVYSLLFSVVIITCSATTYTVGDSSGWDISTNLDAWIADKNFRVGDALVFQYS 193
>TC234005
Length = 457
Score = 41.6 bits (96), Expect = 8e-05
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 6 VVLILSISMVLLSS--VAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
++ I+++ + L V H+VG D+GW D WA +VFRVGD + +S
Sbjct: 22 MIFIVALVAICLGGKWVEAQVHHVVGADRGWDQTSDLVSWAAGRVFRVGDQIWLTYS 192
>TC204673 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(98%)
Length = 582
Score = 41.2 bits (95), Expect = 1e-04
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +3
Query: 4 SRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
S VVL+L ++L S +A A + VGD GWT F+ W + K+FR GD L +S
Sbjct: 63 SAVVLLLCF-LLLHSQMARAATYTVGDSGGWT--FNTVAWPKGKLFRAGDTLAFNYS 224
>TC204674 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(98%)
Length = 635
Score = 41.2 bits (95), Expect = 1e-04
Identities = 25/57 (43%), Positives = 32/57 (55%)
Frame = +2
Query: 4 SRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
S VVL+L +VL S +A A + VGD +GWT F+ W Q K F GD L +S
Sbjct: 71 SAVVLLLCF-LVLQSEMARAATYRVGDSRGWT--FNTVTWPQGKRFTAGDTLAFNYS 232
>TC217028 weakly similar to UP|Q39370 (Q39370) Lamin, partial (80%)
Length = 862
Score = 40.8 bits (94), Expect = 1e-04
Identities = 17/48 (35%), Positives = 33/48 (68%)
Frame = +1
Query: 6 VVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGD 53
++L+L+ +++L+ A AT VG+++ W + +YT+WA+ K F +GD
Sbjct: 115 LLLLLAFTVLLMLPEASATKFTVGNNQFWNPNINYTEWAKGKHFYLGD 258
>TC218114 similar to UP|BCP_PEA (Q41001) Blue copper protein precursor,
partial (57%)
Length = 901
Score = 40.8 bits (94), Expect = 1e-04
Identities = 23/58 (39%), Positives = 34/58 (57%), Gaps = 3/58 (5%)
Frame = +3
Query: 1 MASSRVVLI---LSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MASS +++ L+++MVL + A H VGD GW + DY+ WA +VGD+L
Sbjct: 51 MASSVALVLGLCLALNMVLPTRAAT---HTVGDTSGWALGADYSTWASGLKLKVGDSL 215
>TC207895 similar to UP|O81500 (O81500) F9D12.16 protein (At5g26330), partial
(53%)
Length = 858
Score = 40.4 bits (93), Expect = 2e-04
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +3
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTV--DFDYTQWAQDKVFRVGDNL 55
MA + + M+ V+ A H VGD GWT+ + DY +WA K F+VGD +
Sbjct: 129 MAFIEKAVFFLMMMMTAFQVSHAAVHKVGDSAGWTIIGNIDYKKWAATKNFQVGDTI 299
>CD409344
Length = 438
Score = 39.7 bits (91), Expect = 3e-04
Identities = 20/53 (37%), Positives = 32/53 (59%), Gaps = 2/53 (3%)
Frame = -2
Query: 5 RVVLILSISMVLLSSVAIATDHIVGDDKGWTV--DFDYTQWAQDKVFRVGDNL 55
+ V+ L ++ +S+ A+ H VGD GWT+ + DY +WA K F+VGD +
Sbjct: 413 KAVVFLMMTAFQVSNSAV---HKVGDSAGWTIIGNIDYKKWAATKNFQVGDTI 264
>CD404820 weakly similar to SP|Q41001|BCP_P Blue copper protein precursor.
[Garden pea] {Pisum sativum}, partial (22%)
Length = 632
Score = 39.3 bits (90), Expect = 4e-04
Identities = 19/39 (48%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = -3
Query: 24 TDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNLGTMF 59
T ++VGD GW V D Y WA DK F VGD L +F
Sbjct: 621 TSYVVGDGTGWRVPQDASTYHNWASDKNFTVGDTLSFIF 505
>TC226353 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (26%)
Length = 1341
Score = 39.3 bits (90), Expect = 4e-04
Identities = 21/54 (38%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Frame = +3
Query: 6 VVLILSISMVLLSSVAIATDHIVGDDKGWTVD----FDYTQWAQDKVFRVGDNL 55
++L+L LL A T H+VGD GW + YT WA +K F V D L
Sbjct: 90 LLLVLFAVATLLHGSAAQTRHMVGDATGWIIPAGGAATYTAWASNKTFTVNDTL 251
Score = 32.3 bits (72), Expect = 0.051
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 27 IVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
IVG+ GW V + YT WA K FRVGD L
Sbjct: 621 IVGETAGWIVPGNASFYTAWASGKNFRVGDVL 716
>BE058072 homologue to GP|11994144|dbj contains similarity to
nodulin~gene_id:K10D20.11 {Arabidopsis thaliana},
partial (6%)
Length = 308
Score = 38.1 bits (87), Expect = 0.001
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 12 ISMVLLSSVAIATDHIVGDDKGWTVDFD-----YTQWAQDKVFRVGDNLG 56
+ ++L+ + D +VG KGW+V D + QWA+ F++GD+LG
Sbjct: 39 LCLLLMVHKGASYDFVVGGQKGWSVPNDPSFNPFNQWAEKSRFQIGDSLG 188
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,321,496
Number of Sequences: 63676
Number of extensions: 20193
Number of successful extensions: 150
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of query: 60
length of database: 12,639,632
effective HSP length: 36
effective length of query: 24
effective length of database: 10,347,296
effective search space: 248335104
effective search space used: 248335104
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)
Medicago: description of AC126009.3