BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.1 - phase: 0
(326 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226176 401 e-112
TC226178 UP|Q8BU53 (Q8BU53) Mus musculus 2 days pregnant adult f... 245 2e-65
TC226180 192 2e-49
TC211110 179 1e-45
TC226175 similar to UP|Q9SAK3 (Q9SAK3) T8K14.13, partial (47%) 177 6e-45
TC226177 72 3e-13
BI787482 similar to GP|15010742|gb| At1g54320/F20D21_50 {Arabido... 70 1e-12
TC207281 33 0.17
TC233521 similar to UP|O04140 (O04140) Myb protein, partial (44%) 31 0.66
TC227243 similar to UP|Q6WSC4 (Q6WSC4) PDR-type ABC transporter ... 30 1.5
TC227242 similar to UP|Q8GU90 (Q8GU90) PDR-like ABC transporter ... 30 1.9
TC230271 29 2.5
TC218747 similar to UP|Q76CU1 (Q76CU1) PDR-type ABC transporter ... 28 4.3
BM954585 GP|14133665|g histidine kinase DhkK {Dictyostelium disc... 28 5.6
AW832103 28 5.6
TC205882 UP|Q9SYR0 (Q9SYR0) Nitrate reductase (Fragment), complete 23 5.6
TC216213 28 7.3
TC221062 weakly similar to UP|Q7Y1Z2 (Q7Y1Z2) 27K protein (Fragm... 27 9.6
BM954815 similar to GP|7243765|gb unconventional myosin XI {Vall... 27 9.6
TC211117 similar to UP|Q949G3 (Q949G3) ABC1 protein, partial (6%) 27 9.6
>TC226176
Length = 1554
Score = 401 bits (1031), Expect = e-112
Identities = 195/318 (61%), Positives = 240/318 (75%)
Frame = +1
Query: 4 SRFSQQELHAWQPILTPGWVIAIFTFIGLVFIPIGVASLFASEQVVEVPLRYDDQCLPSL 63
S+F+QQEL A +PILTP VI+ F + +VF+PIGVASL AS +VVE+ RY+ C+P
Sbjct: 331 SKFTQQELPACKPILTPRAVISAFLLVSIVFVPIGVASLIASRKVVEIVFRYESTCIPHE 510
Query: 64 YKDDAMTYIKGNRISKTCTKKLTVKSKMKAPIYVYYQLSNFYQNHRHYVKSRDHKQLRSK 123
D + YI+ + KTC L V MK+PIYVYYQL NFYQNHR YVKSR +QLR +
Sbjct: 511 VTDK-VAYIQ-SPADKTCKISLPVDKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRDR 684
Query: 124 ADENDVGKCFPEDYTANGYLPVVPCGLAAWSLFNDTYRFSNNNKDLVINKKNIAWKSDQK 183
+EN C PED ANG +VPCGL AWSLFNDTY FS +NK+L +NK I+WKSD++
Sbjct: 685 REENSTSACNPEDI-ANGKA-IVPCGLIAWSLFNDTYSFSRDNKNLTVNKNGISWKSDRE 858
Query: 184 AKFGSDVYPKNFQTGSLIGGARLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEA 243
KFG DV+PKNFQ+ ++ GGA LNESIPLS+QEDLIVWMRTAALPTFRKLYGKIEVDL
Sbjct: 859 HKFGKDVFPKNFQSSAIRGGASLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLNE 1038
Query: 244 NDEITVVIENNYNTYQFGGTKSVILSTTTWIGGKNDFLGIAYILIGGLSLVYSLVFLLMY 303
D+I V ++NNYNTY F G K ++LSTT+W+GGKNDFLGIAY+ +GGL +L F ++Y
Sbjct: 1039GDKINVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALAFTIVY 1218
Query: 304 LMKPRPLGDPRYLTWNKN 321
+KPR LGDP YL+WN+N
Sbjct: 1219FVKPRQLGDPSYLSWNRN 1272
>TC226178 UP|Q8BU53 (Q8BU53) Mus musculus 2 days pregnant adult female oviduct
cDNA, RIKEN full-length enriched library,
clone:E230038K10 product:procollagen-proline,
2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase),
alpha II polypeptide, full insert sequence, partial (8%)
Length = 1637
Score = 245 bits (625), Expect = 2e-65
Identities = 115/180 (63%), Positives = 142/180 (78%)
Frame = +1
Query: 142 YLPVVPCGLAAWSLFNDTYRFSNNNKDLVINKKNIAWKSDQKAKFGSDVYPKNFQTGSLI 201
YL V+ G +LFNDTY FS N+ +L +NK I+WKSD+ KFGSDV+PKNFQ G +I
Sbjct: 826 YLAVL*LG----TLFNDTYSFSRNSNNLTVNKTGISWKSDRDHKFGSDVFPKNFQNGPII 993
Query: 202 GGARLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEANDEITVVIENNYNTYQFG 261
GG L+E++PLS+ EDLIVWMRTAALPTFRKLYGKIEVDLE D I V + NNYNTY F
Sbjct: 994 GGGGLDENVPLSQHEDLIVWMRTAALPTFRKLYGKIEVDLEKGDVINVNLHNNYNTYSFN 1173
Query: 262 GTKSVILSTTTWIGGKNDFLGIAYILIGGLSLVYSLVFLLMYLMKPRPLGDPRYLTWNKN 321
G K ++LSTT+++GGKNDFLGIAY+ +GGLS S+ F ++YL+KPR LGDP YL+WN+N
Sbjct: 1174 GKKKLVLSTTSFLGGKNDFLGIAYLTVGGLSFFLSMAFTIVYLVKPRQLGDPSYLSWNRN 1353
Score = 152 bits (385), Expect = 2e-37
Identities = 82/152 (53%), Positives = 104/152 (67%)
Frame = +3
Query: 4 SRFSQQELHAWQPILTPGWVIAIFTFIGLVFIPIGVASLFASEQVVEVPLRYDDQCLPSL 63
S+F+QQEL A +PILTP VI+ F + +VFIPIGVASL AS VVE+ RYD C+PS
Sbjct: 411 SKFTQQELPACKPILTPRAVISAFLIVTIVFIPIGVASLIASHDVVEIIDRYDSHCIPSN 590
Query: 64 YKDDAMTYIKGNRISKTCTKKLTVKSKMKAPIYVYYQLSNFYQNHRHYVKSRDHKQLRSK 123
D + YI+ K C ++LTV+ +MK+PIYVYYQL NFYQNHR YVKSR+ QLR
Sbjct: 591 VTDK-VAYIQTPG-EKPCNRQLTVEKRMKSPIYVYYQLDNFYQNHRRYVKSRNDDQLRDS 764
Query: 124 ADENDVGKCFPEDYTANGYLPVVPCGLAAWSL 155
+ V C PE+ NG + ++PCGL AW+L
Sbjct: 765 GKASSVSGCEPEN-NVNG-MAILPCGLIAWNL 854
>TC226180
Length = 795
Score = 192 bits (487), Expect = 2e-49
Identities = 101/176 (57%), Positives = 126/176 (71%)
Frame = +3
Query: 4 SRFSQQELHAWQPILTPGWVIAIFTFIGLVFIPIGVASLFASEQVVEVPLRYDDQCLPSL 63
S+F+QQEL A +PILTP VI+ F + +VFIPIGVASL AS VVE+ RYD +C+PS
Sbjct: 279 SKFTQQELPACKPILTPRAVISAFLIVTIVFIPIGVASLIASHDVVEIIDRYDLRCIPSN 458
Query: 64 YKDDAMTYIKGNRISKTCTKKLTVKSKMKAPIYVYYQLSNFYQNHRHYVKSRDHKQLRSK 123
D + YI+ K C ++LTV +MK+PIYVYYQL NFYQNHR YVKSR+ +QLR
Sbjct: 459 VTDK-VAYIQTPG-EKQCNRQLTVDKRMKSPIYVYYQLDNFYQNHRRYVKSRNDEQLRDS 632
Query: 124 ADENDVGKCFPEDYTANGYLPVVPCGLAAWSLFNDTYRFSNNNKDLVINKKNIAWK 179
N V C PE+ ANG ++PCGL AWSLFNDTY FS N+K+L +NKK+I+WK
Sbjct: 633 GKANSVSGCEPEN-NANG-KAILPCGLIAWSLFNDTYSFSRNSKNLTVNKKDISWK 794
>TC211110
Length = 486
Score = 179 bits (455), Expect = 1e-45
Identities = 80/109 (73%), Positives = 99/109 (90%)
Frame = +3
Query: 213 SEQEDLIVWMRTAALPTFRKLYGKIEVDLEANDEITVVIENNYNTYQFGGTKSVILSTTT 272
+ +EDLIVWMRTAALPTFRKLYGKIE D+E ND + +VIENNYNTY+FGG KS++LSTTT
Sbjct: 6 ASEEDLIVWMRTAALPTFRKLYGKIETDIEVND-VVLVIENNYNTYEFGGRKSIVLSTTT 182
Query: 273 WIGGKNDFLGIAYILIGGLSLVYSLVFLLMYLMKPRPLGDPRYLTWNKN 321
W+GG+N+FLG+AYILIGG+SL+ + FLL+Y+M+PRPLGDP YL+WNKN
Sbjct: 183 WVGGRNNFLGMAYILIGGISLLLAAAFLLLYVMQPRPLGDPSYLSWNKN 329
>TC226175 similar to UP|Q9SAK3 (Q9SAK3) T8K14.13, partial (47%)
Length = 812
Score = 177 bits (449), Expect = 6e-45
Identities = 80/116 (68%), Positives = 96/116 (81%)
Frame = +3
Query: 206 LNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEANDEITVVIENNYNTYQFGGTKS 265
L ES PLS+QEDLIVWMRTAALPTFRKLYGKIEVDL A D+I V ++NNYNTY F G K
Sbjct: 192 LPESSPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLNAGDQINVTLQNNYNTYSFNGKKK 371
Query: 266 VILSTTTWIGGKNDFLGIAYILIGGLSLVYSLVFLLMYLMKPRPLGDPRYLTWNKN 321
++LSTT+W+GGKNDFLGIAY+ +GGL +L F ++Y +KPR LGDP YL+WN+N
Sbjct: 372 LVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALAFTVVYFVKPRQLGDPSYLSWNRN 539
Score = 59.7 bits (143), Expect = 2e-09
Identities = 35/77 (45%), Positives = 41/77 (52%)
Frame = +1
Query: 39 VASLFASEQVVEVPLRYDDQCLPSLYKDDAMTYIKGNRISKTCTKKLTVKSKMKAPIYVY 98
V S A VVE+ RY+ C D + YI+ + TC L V MK+PIYVY
Sbjct: 1 VXSXXAXXXVVEIVXRYESTCXXHEVTDK-VAYIQ-SPADXTCKISLPVDKHMKSPIYVY 174
Query: 99 YQLSNFYQNHRHYVKSR 115
YQL NFYQNHR V R
Sbjct: 175 YQLDNFYQNHRR*VSRR 225
>TC226177
Length = 432
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/63 (58%), Positives = 45/63 (70%)
Frame = +3
Query: 4 SRFSQQELHAWQPILTPGWVIAIFTFIGLVFIPIGVASLFASEQVVEVPLRYDDQCLPSL 63
S+F+QQEL A +PILTP VI+ F + +VFIPIGVASL AS VVE+ RYD C+PS
Sbjct: 204 SKFTQQELPACKPILTPRAVISAFLIVTIVFIPIGVASLIASHDVVEIIDRYDSHCIPSN 383
Query: 64 YKD 66
D
Sbjct: 384 VTD 392
>BI787482 similar to GP|15010742|gb| At1g54320/F20D21_50 {Arabidopsis
thaliana}, partial (26%)
Length = 447
Score = 70.1 bits (170), Expect = 1e-12
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +2
Query: 247 ITVVIENNYNTYQFGGTKSVILSTTTWIGGKNDFLGIAYILIGGLS 292
I V + NNYNTY F G K ++LSTT+++GGKNDFLGIAY+ +GGLS
Sbjct: 305 INVNLHNNYNTYSFNGKKKLVLSTTSFLGGKNDFLGIAYLTVGGLS 442
Score = 32.0 bits (71), Expect = 0.39
Identities = 15/27 (55%), Positives = 20/27 (73%)
Frame = +2
Query: 4 SRFSQQELHAWQPILTPGWVIAIFTFI 30
S+F+QQEL A +PILTP VI+ F +
Sbjct: 224 SKFTQQELPACKPILTPRAVISAFLIV 304
>TC207281
Length = 581
Score = 33.1 bits (74), Expect = 0.17
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 163 SNNNKDLVINKKNIAWKSDQKAKFGSDVYPKNFQTGSLIGGARLNESIPLSEQEDLIVWM 222
SN N+ + + I +S+ K S+ P NF+ SL+ S+ L + ED I+W+
Sbjct: 104 SNQNQHCALRLEEIQSESEWKL---SESKPPNFENRSLVNNRLCLNSLGLGDMEDQIIWL 274
>TC233521 similar to UP|O04140 (O04140) Myb protein, partial (44%)
Length = 886
Score = 31.2 bits (69), Expect = 0.66
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = -3
Query: 132 CFPEDYTANGYLPVVPC------GLAAWSLFNDTYRFSNNNKDLVINKKNIAWKSDQKAK 185
CF E + A G+ P++PC LA+ +L N+ Y + + ++ + + A
Sbjct: 281 CFQEFHVALGWYPLLPC*ISLV*YLASSNLSNEAYNSCHTLTNQLV*EAH--------AS 126
Query: 186 FGSDVYPKNFQTGSLIGGARLNESIPLSEQEDLIVWMRTA 225
F + L+ +++ SIP S ++ W TA
Sbjct: 125 FHGHIVEYEKPISDLLQQSKVPSSIPFSHNKEFSSWSVTA 6
>TC227243 similar to UP|Q6WSC4 (Q6WSC4) PDR-type ABC transporter 9, partial
(10%)
Length = 704
Score = 30.0 bits (66), Expect = 1.5
Identities = 9/27 (33%), Positives = 21/27 (77%)
Frame = +2
Query: 273 WIGGKNDFLGIAYILIGGLSLVYSLVF 299
+ G K+DF+GI +++ G+++ ++L+F
Sbjct: 320 YFGFKHDFVGICAVVVAGIAVAFALIF 400
>TC227242 similar to UP|Q8GU90 (Q8GU90) PDR-like ABC transporter (PDR3 ABC
transporter), partial (17%)
Length = 1126
Score = 29.6 bits (65), Expect = 1.9
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = +2
Query: 273 WIGGKNDFLGIAYILIGGLSLVYSLVF 299
+ G K+DF+G+ +++ G+++ ++L+F
Sbjct: 755 YFGFKHDFVGVCAVVVAGIAVAFALIF 835
>TC230271
Length = 700
Score = 29.3 bits (64), Expect = 2.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 261 GGTKSVILSTTTWIGGKNDFLGIAYILIGGLSLVYSLVFLLMYLMKPRPL 310
GGT +++ +T +W+ G+ FL G + + SL ++ + RPL
Sbjct: 330 GGTTTILGTTPSWVEGEEGFLSTCL----GWAFMISLALMVPLISSTRPL 193
>TC218747 similar to UP|Q76CU1 (Q76CU1) PDR-type ABC transporter 2
(Fragment), partial (9%)
Length = 617
Score = 28.5 bits (62), Expect = 4.3
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 234 YGKIEVDLEANDEITVVIENNYNTYQFGGTKSVILSTTTWIGGKNDFLGIAYILIGGLSL 293
YG I+ +E++D T V E +Y G K+DFLG+ +I +
Sbjct: 155 YGDIKQSMESSDGRTTV-EGFVRSY---------------FGFKHDFLGVVAAVIVAFPV 286
Query: 294 VYSLVFLLMYLM 305
V++LVF + M
Sbjct: 287 VFALVFAISVKM 322
>BM954585 GP|14133665|g histidine kinase DhkK {Dictyostelium discoideum},
partial (1%)
Length = 422
Score = 28.1 bits (61), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -1
Query: 150 LAAWSLFNDTYRFSNNNKDLVINKKNI 176
LA WS F R N NK+L++ KK +
Sbjct: 122 LAGWSFFPSLRRDINPNKELLVGKKGL 42
>AW832103
Length = 385
Score = 28.1 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 16/17 (93%)
Frame = -3
Query: 285 YILIGGLSLVYSLVFLL 301
+I+IGGL++VYSLV L+
Sbjct: 344 FIIIGGLNMVYSLVMLI 294
>TC205882 UP|Q9SYR0 (Q9SYR0) Nitrate reductase (Fragment), complete
Length = 2934
Score = 23.5 bits (49), Expect(2) = 5.6
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = -1
Query: 132 CFPEDYTANGYLPVVPCGLAAWSLFNDTYRFSNNNKDLVINKKNIAW 178
C P D + + PV+P G W + D + + V+++ W
Sbjct: 441 CGPGDQARDFHGPVLPAGPGDWPVVADVVE-GDRGDEAVVHEAREGW 304
Score = 22.7 bits (47), Expect(2) = 5.6
Identities = 19/83 (22%), Positives = 37/83 (43%), Gaps = 2/83 (2%)
Frame = -2
Query: 202 GGARLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEANDEITVVIENNYNTYQFG 261
GG+ LN P+ + W++ + +P+ R K+E + T V+ +++F
Sbjct: 308 GGSELNGCFPVKRTREEFRWIQWSEVPSSRG--SKME-------DSTSVVPLRIRSFKFK 156
Query: 262 --GTKSVILSTTTWIGGKNDFLG 282
+ S + + + GG FLG
Sbjct: 155 VVSSSSSLEESESGGGGWGSFLG 87
>TC216213
Length = 819
Score = 27.7 bits (60), Expect = 7.3
Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Frame = +2
Query: 249 VVIENNYNTYQFGGTKSVILSTTTWIGGKNDFLGIAYILIGG-LSLVYSLVFLLMYLM 305
V++ YNT Q G + IGG +DF + I+IGG L+ +S +FLL+ L+
Sbjct: 29 VILHTTYNTIQ--GNLTFDF*NLIIIGG-SDF*HLILIIIGGNLNPKFSFLFLLLLLL 193
>TC221062 weakly similar to UP|Q7Y1Z2 (Q7Y1Z2) 27K protein (Fragment),
partial (19%)
Length = 714
Score = 27.3 bits (59), Expect = 9.6
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Frame = +2
Query: 148 CGLAAWSLFNDTYRFSNNNKDLVINKKNIAWKSDQKAKFGSDVYP----KNFQTGSLIGG 203
C L WS + Y+F N + L I WK + + G P N G+ +G
Sbjct: 200 CALNLWSKVDIQYQFVNCFEFLAIKGTIKEWKEECLNQLGLPKEPFLNCFNMGNGTELGK 379
Query: 204 ARLNESIPLSEQEDLIVWM 222
+N+ L + W+
Sbjct: 380 TYINQIAQLDPPPSFVPWV 436
>BM954815 similar to GP|7243765|gb unconventional myosin XI {Vallisneria
gigantea}, partial (6%)
Length = 424
Score = 27.3 bits (59), Expect = 9.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 72 IKGNRISKTCTKKLTVKSKMKAPIY 96
+KG +I KT + KL K+ ++AP Y
Sbjct: 7 LKGYQIGKTVSAKLIFKNNVRAPFY 81
>TC211117 similar to UP|Q949G3 (Q949G3) ABC1 protein, partial (6%)
Length = 354
Score = 27.3 bits (59), Expect = 9.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 273 WIGGKNDFLGIAYILIGGLSLVYSLVFLLMYLM 305
+ G K+DFLG+ ++ G ++ ++L+F + M
Sbjct: 150 YFGFKHDFLGVVAAVLIGFAVTFALIFAIAIKM 248
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,709,660
Number of Sequences: 63676
Number of extensions: 221273
Number of successful extensions: 1119
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of query: 326
length of database: 12,639,632
effective HSP length: 98
effective length of query: 228
effective length of database: 6,399,384
effective search space: 1459059552
effective search space used: 1459059552
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126009.1