BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126006.3 + phase: 0
(692 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM892478 110 2e-24
TC220316 107 1e-23
AW781991 104 1e-22
BG882562 96 7e-20
TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired r... 85 9e-17
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 82 8e-16
TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part... 80 3e-15
BM309807 similar to GP|5764395|gb| far-red impaired response pro... 80 4e-15
BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidop... 77 3e-14
TC232091 74 2e-13
TC210850 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part... 72 8e-13
TC229006 70 3e-12
BI973310 67 3e-11
TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] ... 65 8e-11
AW780793 58 2e-08
TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N... 57 2e-08
BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thalia... 56 6e-08
TC221877 54 2e-07
TC208764 similar to UP|Q9ZVC9 (Q9ZVC9) Mutator-like transposase ... 51 2e-06
BG511116 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidop... 48 1e-05
>BM892478
Length = 429
Score = 110 bits (275), Expect = 2e-24
Identities = 59/135 (43%), Positives = 84/135 (61%), Gaps = 3/135 (2%)
Frame = +3
Query: 205 GALLMHFK-RQSENPSFYYDFQMDVEEKITNVFWADAQMINDYGCS--GDVITFDTTYMT 261
G LL +F+ RQ+E+ F+Y ++D N+FWAD + + Y CS GDV+ DT+Y
Sbjct: 24 GILLEYFQSRQAEDTGFFYAMEVD-NGNCMNIFWADGR--SRYSCSHFGDVLVLDTSYRK 194
Query: 262 NKDYRPLGVFVGLNNHKQMVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTLLTDQDE 321
P FVG+N+HKQ V+ G L+ DE+ SF WLF+T+L+AM G P T++ DQD
Sbjct: 195 TVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDI 374
Query: 322 AMAKAISVVMPQTFH 336
A+ +AI+ V P T H
Sbjct: 375 AIQRAIAKVFPVTHH 419
>TC220316
Length = 988
Score = 107 bits (268), Expect = 1e-23
Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 7/271 (2%)
Frame = +1
Query: 377 EFLNSWNVLLVEHNVSEDSWLRMIFQLKEKWAWVYVRKHFTAGMRSTQLSESFNAELKNY 436
E +WN ++ + +D+WL+ ++Q + W +Y++ F AG+ + +SF L N
Sbjct: 31 EXXATWNXXXNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPMNESLDSFFGALLN- 207
Query: 437 LKSDLNLVQFFSHFGRIVHGIRNNESEADYESRHKLPKLKMKRAPMLVQAGNIYTPKTFE 496
+ L++F + R + R E + D+ + + P L+ K P+ Q +YT F+
Sbjct: 208 --AQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKE-PVEEQCRRLYTLTVFK 378
Query: 497 EFQEEYEE---YLGTCVKNLKEG---LYVVTNYDNNKERMVIG-NLMDQKVACDCRKFET 549
FQ+E + YLG K +EG Y+V N+ E+ V+ N + ++C C+ FE
Sbjct: 379 IFQKELLQCFSYLG--FKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNISISCSCQMFEY 552
Query: 550 HGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNHDLKGQHIELDTKAHFMRRYND 609
G+LC H L+V ++ ++ +P YIL RWTR+ G D++ + K + +
Sbjct: 553 EGVLCRHVLRVFQILQLREVPSRYILHRWTRNTEDGVFPDMESWSSSQELKNLMLWSLRE 732
Query: 610 LCPQMIKLINKASKSHETYTFLSKVFEESDK 640
K I+ + S E Y ++ E +
Sbjct: 733 TAS---KYIDAGATSIEKYKLAYEILREGGR 816
>AW781991
Length = 419
Score = 104 bits (259), Expect = 1e-22
Identities = 55/135 (40%), Positives = 83/135 (60%), Gaps = 9/135 (6%)
Frame = +3
Query: 178 VFKQDGGIDDVG--------YLQTRRMRSLMYGEVGALLMHFKRQ-SENPSFYYDFQMDV 228
+ K+ GGI VG Y++ R+RSL G++ +L + ++ +ENP+F+Y Q D
Sbjct: 18 LIKEYGGISKVGFTEVDCRNYMRNNRLRSLE-GDIQLVLDYLRQMHAENPNFFYAVQGDE 194
Query: 229 EEKITNVFWADAQMINDYGCSGDVITFDTTYMTNKDYRPLGVFVGLNNHKQMVVFGATLL 288
++ ITNVFWAD + +Y GD +TFDTTY +N+ P F G+N+H Q V+FG L
Sbjct: 195 DQSITNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAFFTGVNHHGQPVLFGCAFL 374
Query: 289 YDETIPSFQWLFETF 303
+E+ SF WLF+T+
Sbjct: 375 INESEASFVWLFKTW 419
>BG882562
Length = 416
Score = 95.5 bits (236), Expect = 7e-20
Identities = 46/117 (39%), Positives = 72/117 (61%)
Frame = +3
Query: 214 QSENPSFYYDFQMDVEEKITNVFWADAQMINDYGCSGDVITFDTTYMTNKDYRPLGVFVG 273
Q NP+F+Y ++ + ++ NVFW D++ Y GDV+ FD+T ++N PL FVG
Sbjct: 66 QLMNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVG 245
Query: 274 LNNHKQMVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTLLTDQDEAMAKAISVV 330
+N+H + V+ G LL DET ++ WLF +L M G P+T++T+ +AM AI+ V
Sbjct: 246 VNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTIITNXCKAMQSAIAEV 416
>TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein; Mutator-like transposase-like protein;
phytochrome A signaling protein-like, partial (25%)
Length = 1354
Score = 85.1 bits (209), Expect = 9e-17
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
Frame = +2
Query: 465 DYESRHKLPKLKMKRAPMLVQAGNIYTPKTFEEFQEEYEEYLGTCVKNLKEG----LYVV 520
D ++ +K+ LK +P+ I+T F++ Q E + K ++ ++ V
Sbjct: 2 DSDTWNKVATLKTP-SPLEKSVAGIFTHAVFKKIQAEVIGAVACHPKADRQDDTTIVHRV 178
Query: 521 TNYDNNKERMVIGNLMDQKVACDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTR 580
+ + NK+ V+ N + +++C CR FE G LC HAL VL + P YILKRWT+
Sbjct: 179 HDMETNKDFFVVVNQVKSELSCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTK 358
Query: 581 DARLGSNHDLKGQHIELDTKAHFMRRYNDLCPQMIKLINKASKSHETYTFLSKVFEESDK 640
DA++ + + +H+ ++RYNDLC + +KL + S S E+Y E+ K
Sbjct: 359 DAKVRNIMGEESEHM-----LTRVQRYNDLCQRALKLSEEGSLSQESYGIAFHALHEAHK 523
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 82.0 bits (201), Expect = 8e-16
Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Frame = +1
Query: 253 ITFDTTYMTNKDYRPLGVFVGLNNHKQMVVFGATLLYDETIPSFQWLFETFLKAMGGEKP 312
+ FDTTY LG+++G++N+ F LL DE I SF W + FL M G+ P
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAP 189
Query: 313 KTLLTDQDEAMAKAISVVMPQTFHGLCTWRIRENAQTHVNHLYQKSSKFCSDFEACIDLH 372
+T+LTD + + +AI+V +PQT H C W I SKF F +
Sbjct: 190 QTILTDHNMWLKEAIAVELPQTKHAFCIWHI--------------LSKFSDWFSLLLGSQ 327
Query: 373 EEE--GEFLNSWNVLLVEHNVSEDSWLRMIFQ 402
+E EF +N+ VE E+ W +M+ Q
Sbjct: 328 YDEWKAEFHRLYNLEQVED--FEEGWRQMVDQ 417
>TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (65%)
Length = 866
Score = 80.1 bits (196), Expect = 3e-15
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = +1
Query: 41 EFESEAAAYEFYNKYSRRIGFGIRREYGNKSKKDGILTSRRFTCFKEGKRGVDKRDHLTK 100
EF SEAAA+ FYN Y+ +GF +R ++S++DG R C KEG R DKR+ + +
Sbjct: 4 EFGSEAAAHAFYNAYATEVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKREKIVR 183
Query: 101 EGRVETRTGCDARMVISLDRKI--GKYKVVDFVAQHNHLLEP 140
+ R ETR GC A +++ RK+ GK+ V FV +H H L P
Sbjct: 184 Q-RAETRVGCRAMIMV---RKLSSGKWVVAKFVKEHTHPLTP 297
>BM309807 similar to GP|5764395|gb| far-red impaired response protein
{Arabidopsis thaliana}, partial (15%)
Length = 428
Score = 79.7 bits (195), Expect = 4e-15
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Frame = +3
Query: 485 QAGNIYTPKTFEEFQEEYEEYLGTCVKNLKEG-----LYVVTNYDNNKERMVIGNLMDQK 539
Q +YT F++FQ E G C ++ G ++V +Y+ ++E +V N + +
Sbjct: 54 QMSTVYTHAIFKKFQVEVLGVAG-CQSRIEAGDGTIAKFIVQDYEKDEEFLVTWNELSSE 230
Query: 540 VACDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNHDLKGQHIELDT 599
V+C CR FE G LC HAL VL +P HYILKRWT+DA++ + + T
Sbjct: 231 VSCFCRLFEYKGFLCRHALSVLQRCGCSCVPSHYILKRWTKDAKI--KELMADRTRRTQT 404
Query: 600 KAHFMRRYNDL 610
+ ++RYNDL
Sbjct: 405 R---VQRYNDL 428
>BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (9%)
Length = 402
Score = 77.0 bits (188), Expect = 3e-14
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 524 DNNKERMVIGNLMDQKVACDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDAR 583
D+ K MV N + K C C+ FE GILC H L V V N+ +P HYILKRWTR+A+
Sbjct: 35 DDQKAYMVTLNHSELKANCSCQMFEYAGILCKHILTVFTVTNVLTLPPHYILKRWTRNAK 214
Query: 584 LGSNHDLKGQHI-ELDTKAHFMRRYNDLCPQMIKLINKASKSHETY 628
+ D +H E + RY +LC + I+ + S + ETY
Sbjct: 215 NSAGLD---EHTGESHAQESLTARYGNLCKEAIRYAEEGSVTVETY 343
>TC232091
Length = 530
Score = 74.3 bits (181), Expect = 2e-13
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 36 PHLEMEFESEAAAYEFYNKYSRRIGFGIRREYGNKSKKDGILTSRRFTCFKEGKR-GVDK 94
P++ MEF+SE AA FY +Y+RR GF +R + ++S+ D + SRRF+C K+G V
Sbjct: 136 PNVGMEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRN 315
Query: 95 RDHLTKEGRVETRTGCDARMVISLDRKIGKYKVVDFVAQHNHLL 138
+ + R R GC+A M + ++ GK+ V FV +H+HLL
Sbjct: 316 KTKPVHKPRASIREGCEAMMYVKVN-TCGKWVVTKFVKEHSHLL 444
>TC210850 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (63%)
Length = 1326
Score = 72.0 bits (175), Expect = 8e-13
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Frame = +1
Query: 46 AAAYEFYNKYSRRIGFGIRREYGNKSKKDGILTSRRFTCFKEGKRGVDKRDHLTKEGRVE 105
AAA+ FYN Y+ +GF +R ++S++DG R C KEG R DKR+ + ++ R E
Sbjct: 1 AAAHAFYNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKREKIVRQ-RAE 177
Query: 106 TRTGCDARMVISLDRKI--GKYKVVDFVAQHNHLLEP 140
TR GC A +++ RK+ GK+ + FV +H H L P
Sbjct: 178 TRVGCRAMIMV---RKLSSGKWVIAKFVKEHTHPLTP 279
>TC229006
Length = 991
Score = 70.1 bits (170), Expect = 3e-12
Identities = 45/123 (36%), Positives = 67/123 (53%), Gaps = 1/123 (0%)
Frame = +2
Query: 36 PHLEMEFESEAAAYEFYNKYSRRIGFGIRREYGNKSKKDGILTSRRFTCFKEGK-RGVDK 94
P+ MEFESE AA FY++Y+RR+GF +R + ++DG + +RR C KEG +
Sbjct: 101 PYEGMEFESEDAAKIFYDEYARRLGFVMRVMSCRRPERDGRILARRLGCNKEGYCVSIRG 280
Query: 95 RDHLTKEGRVETRTGCDARMVISLDRKIGKYKVVDFVAQHNHLLEPPGYFHTPRSHRQIS 154
+ ++ R TR GC A + I + K GK+ + FV HNH L +PR RQ
Sbjct: 281 KFASVRKPRASTREGCKAMIHIKYN-KSGKWVITKFVKDHNHPL-----VVSPREARQTM 442
Query: 155 ESR 157
+ +
Sbjct: 443 DEK 451
>BI973310
Length = 457
Score = 67.0 bits (162), Expect = 3e-11
Identities = 40/130 (30%), Positives = 65/130 (49%)
Frame = +3
Query: 377 EFLNSWNVLLVEHNVSEDSWLRMIFQLKEKWAWVYVRKHFTAGMRSTQLSESFNAELKNY 436
EF + W+ LL V ++ WL+ I+ ++ W VY+R+ F + + +E + Y
Sbjct: 12 EFESYWHSLLERFYVMDNEWLQSIYNSRQHWVPVYLRETFFGEISLNEGNEYLISFFDGY 191
Query: 437 LKSDLNLVQFFSHFGRIVHGIRNNESEADYESRHKLPKLKMKRAPMLVQAGNIYTPKTFE 496
+ S L + + V E +ADY++ + P LK +PM QA ++YT K F
Sbjct: 192 VFSSTTLQVLVRQYEKAVSSWHEKELKADYDTTNSSPVLKTP-SPMEKQAASLYTRKIFM 368
Query: 497 EFQEEYEEYL 506
+FQEE E L
Sbjct: 369 KFQEELVETL 398
>TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(8%)
Length = 551
Score = 65.5 bits (158), Expect = 8e-11
Identities = 47/159 (29%), Positives = 70/159 (43%), Gaps = 13/159 (8%)
Frame = +1
Query: 436 YLKSDLNLVQFFSHFGRIVHGIRNNESEADYESRHKLPKLKMKRAPMLVQAGNIYTPKTF 495
Y+ + +F + ++H E+ AD E+R+ +LK R VQ +YT + F
Sbjct: 7 YVHKHTSFKEFVDKYDLVLHRKHLKEAMADLETRNVSFELKT-RCNFEVQLAKVYTKEIF 183
Query: 496 EEFQEEYEEYLGTCVKN-------------LKEGLYVVTNYDNNKERMVIGNLMDQKVAC 542
++FQ E E + +C +KE + V N K V+ + + C
Sbjct: 184 QKFQSEVEG-MYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETTELDIRC 360
Query: 543 DCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRD 581
C F G LC AL VL+ I+ IP YIL RW RD
Sbjct: 361 ICSLFNYKGYLCRRALNVLNYNGIEEIPSRYILHRWRRD 477
>AW780793
Length = 419
Score = 57.8 bits (138), Expect = 2e-08
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Frame = +3
Query: 36 PHLEMEFESEAAAYEFYNKYSRRIGFGIRREYGNKSKKDGILTSRRFTCFKEGKRGVDKR 95
P + MEF S A EFY Y RRIGF +R + +S+ + + + F C KEG R +
Sbjct: 132 PFIGMEFNSREEAREFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRA---K 302
Query: 96 DHLTKEGRV-----ETRTGCDARMVISLDRKIGKYKVVDF 130
+L ++ RV TR GC A + ++L R GK+ V F
Sbjct: 303 KYLHRKDRVLPPPPATREGCQAMIRLAL-RDRGKWVVTKF 419
>TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N23_12),
partial (30%)
Length = 971
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Frame = +2
Query: 443 LVQFF-SHFGRIVHGIRNNESEADYESR--------HKLPKLKMKR-APMLVQAGNIYTP 492
L+QFF S R+ H + D++ + L + +K APM A I TP
Sbjct: 104 LIQFFLSAQTRLAHFVEQVAVAVDFKDQTG*QQTMQQNLQNVCLKTGAPMESHAATILTP 283
Query: 493 KTFEEFQEEYEEYLGTCVKNLKEGLYVVTNYDNNKERMVIGNLMDQKVACDCRKFETHGI 552
F + QE+ ++++G V + R V + ++C C +FE GI
Sbjct: 284 FAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGI 463
Query: 553 LCSHALKVLDVMNIKLIPQHYILKRWTR 580
LC H+L+VL N IP Y+ RW R
Sbjct: 464 LCRHSLRVLSTGNCFQIPDRYLPIRWRR 547
>BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana}, partial
(20%)
Length = 422
Score = 55.8 bits (133), Expect = 6e-08
Identities = 33/129 (25%), Positives = 61/129 (46%), Gaps = 1/129 (0%)
Frame = +1
Query: 319 QDEAMAKAISVVMPQTFHGLCTWRIRENAQTHVNH-LYQKSSKFCSDFEACIDLHEEEGE 377
Q+ + +A+S MP T H C W I + N L ++ + + ++F +L E +
Sbjct: 1 QNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVE-D 177
Query: 378 FLNSWNVLLVEHNVSEDSWLRMIFQLKEKWAWVYVRKHFTAGMRSTQLSESFNAELKNYL 437
F W + + + + ++ + WA ++R HF AGM +T S+S NA ++ +L
Sbjct: 178 FELGWREMACSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFL 357
Query: 438 KSDLNLVQF 446
+ L F
Sbjct: 358 SAQTRLAHF 384
>TC221877
Length = 1068
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +2
Query: 566 IKLIPQHYILKRWTRDARLGSNHDLKGQHIELDTKAHFMRRYNDLCPQMIKLINKASKSH 625
IK++P YIL RWT ARLG+ +++ ++ + Y DLC +++KL +AS+S
Sbjct: 2 IKVVPSRYILDRWTGHARLGNLREIRQCKMQDNPNMVVTSCYKDLCNRLLKLSARASESM 181
Query: 626 ETYTFLSKVFEE 637
E Y F ++ +E
Sbjct: 182 EAYQFAARQLDE 217
>TC208764 similar to UP|Q9ZVC9 (Q9ZVC9) Mutator-like transposase
(At2g27110/T20P8.16), partial (4%)
Length = 774
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +2
Query: 558 LKVLDVMNIKLIPQHYILKRWTRDARLGSNHDLKGQHIELDT---KAHFMRRYNDLCPQM 614
L V V N+ +P HYILKRWTR+A+ SN L+ ++ T ++H + RYN L +
Sbjct: 5 LAVFRVTNVLTLPSHYILKRWTRNAK--SNVILEEHACDVYTYYLESHIV-RYNTLRHEA 175
Query: 615 IKLINKASKSHETYTFLSKVFEESDK 640
K +++ ++S ETY +E+ K
Sbjct: 176 FKFVDEGARSAETYDVAMDALQEAAK 253
>BG511116 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (7%)
Length = 296
Score = 48.1 bits (113), Expect = 1e-05
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 556 HALKVLDVMNIKLIPQHYILKRWTRDARLGSNHDLKGQHIELDTK--AHFMRRYNDLCPQ 613
H L V V N+ +P HYILKRWT +A+ D++ D + R+N LC +
Sbjct: 1 HILTVFTVTNVLTLPSHYILKRWTTNAK----SDIRTYEKITDPLDIENLTVRFNSLCRE 168
Query: 614 MIKLINKASKSHETYTFLSKVFEESDKIIDDM 645
IKL + + + ETY E K + M
Sbjct: 169 AIKLAEEGAIAVETYNATMNALREGAKRVGIM 264
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,757,978
Number of Sequences: 63676
Number of extensions: 417705
Number of successful extensions: 1910
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of query: 692
length of database: 12,639,632
effective HSP length: 104
effective length of query: 588
effective length of database: 6,017,328
effective search space: 3538188864
effective search space used: 3538188864
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC126006.3