BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126006.10 - phase: 0 /pseudo
(352 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI495080 80 2e-15
CA820303 72 4e-13
BQ576456 69 3e-12
TC211858 47 9e-12
TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%) 52 3e-07
CO979307 52 4e-07
TC234144 42 5e-04
BG881451 weakly similar to PIR|D96521|D96 protein F21D18.16 [imp... 40 0.002
BF071225 weakly similar to PIR|D96521|D96 protein F21D18.16 [imp... 38 0.006
TC220808 weakly similar to UP|Q9SK32 (Q9SK32) Expressed protein,... 30 1.3
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat... 30 2.1
BE191311 30 2.1
TC224671 similar to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, p... 28 6.3
TC218757 28 6.3
AW472176 similar to SP|O81361|RS8_ 40S ribosomal protein S8. [Ap... 28 8.2
TC230732 similar to UP|O48796 (O48796) F24O1.5, partial (46%) 28 8.2
TC211545 weakly similar to UP|Q7XHQ1 (Q7XHQ1) Calcineurin-like p... 28 8.2
>AI495080
Length = 407
Score = 79.7 bits (195), Expect = 2e-15
Identities = 51/124 (41%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Frame = +2
Query: 165 KALGGSVTLLTIRKLIFYFFVNVDPNT---DYMENYPVAARWKLQKGHEEGIM---YRSL 218
+ L G +TLL I+ F +V +T DY E P A RW K + I YR
Sbjct: 2 RQLSGYITLLQC--WIYEHFPSVAESTAD*DYDEASPRACRWIATKKTVKSIRTPSYRER 175
Query: 219 LDRIQLDDVCWRPYEEHREIQDFEDVFWYSGWIMCGVRRVYRHLPERVLRQYGYMQTIPR 278
L+R+++ DVCW Y EHRE+QDF YSG + G+ VY + PE+V+RQ+GY IP
Sbjct: 176 LNRLRISDVCWILYGEHREVQDFHVRSCYSGLLHWGLVAVY-YRPEKVVRQFGYTPAIPA 352
Query: 279 HPTD 282
P D
Sbjct: 353 PPVD 364
>CA820303
Length = 421
Score = 72.0 bits (175), Expect = 4e-13
Identities = 36/68 (52%), Positives = 44/68 (63%)
Frame = -1
Query: 215 YRSLLDRIQLDDVCWRPYEEHREIQDFEDVFWYSGWIMCGVRRVYRHLPERVLRQYGYMQ 274
YR LDR+++ DVCW PY EHRE+QDF YSG + G VY + ERV+RQ+GY Q
Sbjct: 397 YRERLDRLRIPDVCWIPYGEHREVQDFHVRSCYSGLLCWGPVVVY-YRSERVVRQFGYTQ 221
Query: 275 TIPRHPTD 282
TIP D
Sbjct: 220 TIPASTVD 197
>BQ576456
Length = 424
Score = 68.9 bits (167), Expect = 3e-12
Identities = 47/150 (31%), Positives = 69/150 (45%)
Frame = +1
Query: 4 GEMTVTLDDVACLTHLPIEGRMLSHGKKMPKHEGAALLMRHLGVSQQEAEKICGQEYGGY 63
GE+T+TLDD+ACL HLPI G L + + E LLM L VS++EA + + Y
Sbjct: 31 GELTITLDDMACLLHLPITG-ALHRFEPLGVDEAVLLLMELLEVSREEARAKIVRAHRAY 207
Query: 64 ISYPRLRDFYTTYLGRANLLASTEDPVELEELARVRTYCVRCYLLYLIGCLLFGDRSNKR 123
+ LR+ Y + AR VR YL +L+ C LF ++S
Sbjct: 208 VRLSWLREVYQSRC-----------------QARCWIVAVRAYLFHLVDCTLFANKSATH 336
Query: 124 IELIYLTTMEDGYAGMRNYSWGGMTLAYLY 153
+ +++L D Y WG L ++Y
Sbjct: 337 VHVVHLKGF*D-LC*SGGYGWGVAALVHMY 423
>TC211858
Length = 524
Score = 46.6 bits (109), Expect(3) = 9e-12
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -3
Query: 193 YMENYPVAARWKLQKGHEEGIM---YRSLLDRIQLDDVCWRPYEEHREIQDFE 242
Y E P A+RW K H +GI YR+ D + + DV W PY EHR ++ FE
Sbjct: 180 Y*ETSPRASRWLTSKAHMKGITGAPYRARCDALTVIDVSWLPYTEHRGVRAFE 22
Score = 34.3 bits (77), Expect(3) = 9e-12
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 124 IELIYLTTMED-GYAGMRNYSWGGMTLAYLYGELADACRPGDKALGGSVTLLTIRKLIFY 182
+ ++YL D G +G Y+WG L ++Y +L +A R + + G +TLL + +
Sbjct: 470 VHVVYLDAFRDLGQSG--GYAWGVAALVHMYNQLDEASRTTTRQIVGYLTLLQVN----F 309
Query: 183 FFVNV 187
F+N+
Sbjct: 308 VFLNM 294
Score = 25.8 bits (55), Expect(3) = 9e-12
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 106 YLLYLIGCLLFGDRS 120
YLL+L+GC LF ++S
Sbjct: 523 YLLHLVGCTLFANKS 479
>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
Length = 746
Score = 52.4 bits (124), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%)
Frame = -1
Query: 4 GEMTVTLDDVACLTHLPIEGRMLSHGKKMPKHEGAALLMRHLGVSQQEAEKICGQEYGGY 63
GE T+TL DV L L +G L + + A L LGV QE G+ G
Sbjct: 422 GEATITLQDVLILLGLRTDGAPLIGSTNL---DWADLCEELLGVRPQE-----GEIEGSV 267
Query: 64 ISYPRLRDFYTTYLGRANLLASTEDPVELEELARVRTYCVRCYLLYLIGCLLFGDRSNKR 123
+ L +++ N+ D +E+L R +R ++L IG ++F ++S+ R
Sbjct: 266 VKLSWLAHYFS----HINI-----DEGNVEQLQRF----IRAWILRFIGGVIFVNKSSSR 126
Query: 124 IELIYLTTMEDGYAGMRNYSWGGMTLAYLYGEL 156
+ L YL + D + Y+WG LAYLY E+
Sbjct: 125 VSLRYLQFLRD-FE*CSTYAWGPAMLAYLYREM 30
>CO979307
Length = 553
Score = 52.0 bits (123), Expect = 4e-07
Identities = 41/169 (24%), Positives = 74/169 (43%)
Frame = -3
Query: 109 YLIGCLLFGDRSNKRIELIYLTTMEDGYAGMRNYSWGGMTLAYLYGELADACRPGDKALG 168
+LI ++F D+S + + YL + + G L YLY L+ +K G
Sbjct: 551 HLISSMIFADKSLAHVHVAYL*YLSN-LTACHK*V*GVAALVYLYDHLSYVSLDDNKQCG 375
Query: 169 GSVTLLTIRKLIFYFFVNVDPNTDYMENYPVAARWKLQKGHEEGIMYRSLLDRIQLDDVC 228
+TLL V DY + P+ RW G ++ + ++ I ++
Sbjct: 374 DYMTLLMA*VFEHLPSVGYSNPEDYSDGDPLNTRWNPLGGTRHALLVKERMNNIHMNVFI 195
Query: 229 WRPYEEHREIQDFEDVFWYSGWIMCGVRRVYRHLPERVLRQYGYMQTIP 277
PYE ++ ++ F + G+ C + + +L +RV RQ+ ++QTIP
Sbjct: 194 *CPYE*NKLVRPFVEQTL*FGYFKCRI-DMRSYLLKRVRRQFCHVQTIP 51
>TC234144
Length = 468
Score = 41.6 bits (96), Expect = 5e-04
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 216 RSLLDRIQLDDVCWRPYEEHREIQDFEDVFWYSGWIMCG 254
R LD + D+ W PY HRE + F D+ +SG+I CG
Sbjct: 6 RPALDML*TKDILWMPYTVHREHRPFHDISLFSGYIRCG 122
>BG881451 weakly similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (1%)
Length = 421
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 213 IMYRSLLDRIQLDDVCWRPYE--EHREIQDFED---VFWYSGWIMCGVRRVYRHLPERVL 267
+ YR LD ++ DV W PY + I ++ + S ++ + RHLP R L
Sbjct: 6 VFYRKSLDSLKPCDVEWLPYRNMDSMVIPEYIKSTLILGRSKTMLICFDKAERHLPNRCL 185
Query: 268 RQYGYMQTIP 277
RQYG +Q+IP
Sbjct: 186 RQYGMLQSIP 215
>BF071225 weakly similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (4%)
Length = 359
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/79 (30%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Frame = +2
Query: 208 GHEEGIMYRSLLDRIQLDDVCWRPYEEH-----REIQDFEDVFWYSGWIMCGVRRVYRHL 262
G+++ ++R LD ++ + W PY +I V W++ + V H
Sbjct: 29 GNDDLRVFRRKLDLMKRHEFVWEPYTPTVMAALPQICVVGSVVWFAVVPLICFHVVEWHQ 208
Query: 263 PERVLRQYGYMQTIPRHPT 281
P+RVLRQYG Q IP P+
Sbjct: 209 PDRVLRQYGLQQPIPGCPS 265
>TC220808 weakly similar to UP|Q9SK32 (Q9SK32) Expressed protein, partial
(9%)
Length = 869
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 260 RHLPERVLRQYGYMQTIPR 278
RHLP+R LRQ+ QTIP+
Sbjct: 58 RHLPDRCLRQFAMHQTIPK 114
>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 429
Score = 29.6 bits (65), Expect = 2.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 4 GEMTVTLDDVACLTHLPIEGRML 26
GE T+TL DV+ L +P++GR L
Sbjct: 273 GEATITLQDVSVLLGIPVDGRPL 205
>BE191311
Length = 397
Score = 29.6 bits (65), Expect = 2.1
Identities = 23/78 (29%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
Frame = -1
Query: 171 VTLLTIRKLIFYFFVNVDPNTDYMENYPVAARWKLQKGHEEGIMYRSLLDRIQLDDVCWR 230
V+ L I ++ VN+ TD PV L GHE ++L+ +QLD + R
Sbjct: 328 VSRLRINTIVRVRIVNIXIRTD-----PVEMGLDLVLGHEHSRYSQALILHVQLDKI--R 170
Query: 231 PYEEHREI--QDFEDVFW 246
P+ H ++DVF+
Sbjct: 169 PFRNHNGTIRGQYKDVFF 116
>TC224671 similar to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, partial (87%)
Length = 1803
Score = 28.1 bits (61), Expect = 6.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 233 EEHREIQDFED-VFWYSGWIMCGVRRVYRHLPERVLRQYGYMQTIPRHPTDVVELPLPYI 291
+E R I+D V W W + GV V R +R+L+Q Y+ P + V+ L ++
Sbjct: 999 DERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQ--YVVADPEIQEEKVDSSLEFL 1172
Query: 292 VQA 294
+ A
Sbjct: 1173 ILA 1181
>TC218757
Length = 773
Score = 28.1 bits (61), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = -3
Query: 311 RQESRHGGWLMAICYGTLGCLTLILCHL 338
+Q HG +L +CY + L+LCH+
Sbjct: 231 QQRQEHGIYLNGVCYQ*TSSMNLMLCHI 148
>AW472176 similar to SP|O81361|RS8_ 40S ribosomal protein S8. [Apricot]
{Prunus armeniaca}, partial (52%)
Length = 352
Score = 27.7 bits (60), Expect = 8.2
Identities = 8/29 (27%), Positives = 19/29 (64%)
Frame = +3
Query: 300 THTLKAAIGVSRQESRHGGWLMAICYGTL 328
TH+ + + V+ +HGGW++++ +G +
Sbjct: 123 THSGRFGVRVAMSNVKHGGWILSMTHGVV 209
>TC230732 similar to UP|O48796 (O48796) F24O1.5, partial (46%)
Length = 1178
Score = 27.7 bits (60), Expect = 8.2
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +2
Query: 17 THLPIEGRMLSHGKKMPKHEGAALLMRHLGVSQQEAEKICGQE-YGGYISYPRLRDFYTT 75
T LP + S G E + L++ LG +++ + G YGG L + Y
Sbjct: 467 TKLPSPSELRSEGLCPLTPEESILMLGALGFNRKTHIFVAGSNLYGGGSRLVALTNLYPK 646
Query: 76 YLGRANLLASTEDPVELEELARVRTYCVRCYLLYLIGC 113
+ + NLL+S EL Y + L IGC
Sbjct: 647 LVTKENLLSSA-------ELKSFANYSSQLAALDFIGC 739
>TC211545 weakly similar to UP|Q7XHQ1 (Q7XHQ1) Calcineurin-like
phosphoesterase-like, partial (11%)
Length = 1127
Score = 27.7 bits (60), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 261 HLPERVLRQYGYMQTIPRHP 280
H +RVLRQ+G Q+IP P
Sbjct: 801 HQSDRVLRQFGMQQSIPEGP 860
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.143 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,933,365
Number of Sequences: 63676
Number of extensions: 270244
Number of successful extensions: 1658
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of query: 352
length of database: 12,639,632
effective HSP length: 98
effective length of query: 254
effective length of database: 6,399,384
effective search space: 1625443536
effective search space used: 1625443536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126006.10