BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125481.2 + phase: 0 /pseudo
(1546 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922488 151 2e-36
NP334778 reverse transcriptase [Glycine max] 146 8e-35
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 119 8e-27
NP395547 reverse transcriptase [Glycine max] 116 9e-26
NP595172 polyprotein [Glycine max] 113 7e-25
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -... 105 1e-22
NP395548 reverse transcriptase [Glycine max] 105 1e-22
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 103 4e-22
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 93 1e-18
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 87 4e-17
BI316922 84 6e-16
AW184779 74 2e-14
BG839293 60 1e-08
TC211815 47 8e-05
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 43 0.001
AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine m... 41 0.004
BI321666 40 0.006
TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 40 0.008
TC206741 36 0.11
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 34 0.43
>CF922488
Length = 741
Score = 151 bits (381), Expect = 2e-36
Identities = 73/159 (45%), Positives = 105/159 (65%)
Frame = +3
Query: 642 VKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDL 701
V K GK MCVDY DLN A PKD +PLP+I+ L+DN + SFMD +S YNQ+K+
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 702 LDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSA 761
D K F+T + Y+ MSFGL+N GAT+QR+M +F + + +EVY+DD++VK+
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 762 EGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENFWVF 800
E +H +L+++F+++RK +RLNPAKC F V + F
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDF 479
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 146 bits (368), Expect = 8e-35
Identities = 69/143 (48%), Positives = 96/143 (66%)
Frame = +3
Query: 650 RMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVF 709
RMCVDY DLN A PKD +PLP+ID L+ N A + SFMD +S YNQ+KM D K F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 710 MTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDL 769
+T + Y+VMSFGL+N GAT+ R+M +F + + +E YVD+++ K+ E +H +L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 770 KEIFQQVRKANMRLNPAKCTFGV 792
+ +F Q+RK +RLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 119 bits (299), Expect = 8e-27
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Frame = +1
Query: 1179 QETEG--WMAPILKYLTGS--FDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCL 1234
+E +G W I +Y+ +++ +K+ +R+ AA F + LYKR LRC+
Sbjct: 118 EERDGKPWYFDIKRYVISKEYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCV 297
Query: 1235 GEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDK 1294
E ++ EVHEG G+H +G ++ K+LRAGYYW M DCC V+KC KCQ F+D
Sbjct: 298 DAREANHMIEEVHEGSFGTHANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADN 477
Query: 1295 KTAPANELTSVFSPWPFHKSGVDIVGPFPP 1324
AP + L + SPWPF G+D++G P
Sbjct: 478 VNAPPHPLNVMSSPWPFSMWGIDVIGAIEP 567
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 116 bits (290), Expect = 9e-26
Identities = 70/197 (35%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Frame = +1
Query: 614 VDEEVRKLKEARFISEIKYPTWLANTVLVKKSSG------------------KWRMCVDY 655
V +EV KL EA I I +W++ +V K G +WRMC+DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 656 TDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKN 715
LN A KD YPLP +D ++ A F+D YS YNQ+ +D D K F
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 716 YHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQ 775
+ Y M FGL NA TFQR M IF + + +EV++DD ++ G +L+++ Q+
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 776 VRKANMRLNPAKCTFGV 792
K+N+ LN KC F V
Sbjct: 541 CEKSNLVLNWEKCHFMV 591
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 113 bits (282), Expect = 7e-25
Identities = 72/250 (28%), Positives = 124/250 (48%)
Frame = +1
Query: 542 PNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQ 601
P T+K L + L LL A +FA P+ +P + H + + PV
Sbjct: 1639 PEDTLK---DLPTNIDPELAILLHTYAQVFA-VPASLP--PQREQDHAIPLKQGSGPVKV 1800
Query: 602 KKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMA 661
+ + ++ +++ ++++ I P L +LVKK G WR C DY LN
Sbjct: 1801 RPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLP-ILLVKKKDGSWRFCTDYRALNAI 1977
Query: 662 CPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVM 721
KD +P+P +D L+D G + S +D S Y+Q+ + D K F T+ +Y + VM
Sbjct: 1978 TVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVM 2157
Query: 722 SFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANM 781
FGL NA ATFQ M+ IF + + + V+ DD+++ +++ H + L+ + Q +++ +
Sbjct: 2158 PFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQL 2337
Query: 782 RLNPAKCTFG 791
+KC+FG
Sbjct: 2338 FARLSKCSFG 2367
Score = 48.9 bits (115), Expect = 2e-05
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 1211 AAKFTIVAGKLY-KRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGY 1269
A+ +T+ G LY K V P EE +L E H G H +A+L +A +
Sbjct: 3136 ASHYTVREGLLYWKDRVVIPA----EEEIVNKILQEYHSSPIGGHAGITRTLARL-KAQF 3300
Query: 1270 YWPRMTQDCCEFVKKCDKCQRFSDKKTAPANEL 1302
YWP+M +D +++KC CQ+ T PA L
Sbjct: 3301 YWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLL 3399
>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (1%)
Length = 285
Score = 105 bits (263), Expect = 1e-22
Identities = 53/90 (58%), Positives = 64/90 (70%)
Frame = -3
Query: 588 HHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSG 647
H LAI VK V Q+KRK+ EE+ + V +EV KL A FI +I Y T L + V+VKK +G
Sbjct: 277 HKLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNG 98
Query: 648 KWRMCVDYTDLNMACPKDPYPLPNIDHLID 677
KWR+C DY DLN ACPKD YPLPNIDH+ D
Sbjct: 97 KWRICTDYIDLN*ACPKDAYPLPNIDHMTD 8
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 105 bits (263), Expect = 1e-22
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Frame = +1
Query: 614 VDEEVRKLKEARFISEIKYPTWLANTVLVKKSSG------------------KWRMCVDY 655
V +EV KL E I I W++ ++V K G W++C+DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 656 TDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKN 715
LN A KD +PLP +D +++ AG+ F+DAY YNQ+ +D D K+ F
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 716 YHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQ 775
+ Y + FGL NA TFQ M IF+ + +++EV++DD V + + L+ + Q+
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 776 VRKANMRLNPAKCTFGV 792
+ N+ LN KC F V
Sbjct: 541 CVETNLVLNWEKCHFMV 591
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 103 bits (258), Expect = 4e-22
Identities = 48/107 (44%), Positives = 72/107 (66%)
Frame = +2
Query: 686 SFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIG 745
SFMD +S YNQ+ M D K F+T + Y VM+FGL+N GAT+QR+M +F +
Sbjct: 5 SFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMMH 184
Query: 746 RNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGV 792
+ +EVYVDD++ K+ E +H +L ++F +++K ++LNP KCTFGV
Sbjct: 185 KEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGV 325
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 92.8 bits (229), Expect = 1e-18
Identities = 61/188 (32%), Positives = 98/188 (51%), Gaps = 8/188 (4%)
Frame = +2
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DS L+ +Q+ GE +T+D L Y + ++ LA FF+ +V E+N AD LA L S
Sbjct: 254 DSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA*EENQMADALATLVSMF 433
Query: 1152 R--PGNNRTVIQEVVSAPNCEAKE----VLSTTQETEGWMAPILKYLTGSFDPV--SEEE 1203
+ P + I+ C + ++ ++ + W I +Y+ P+ S+ +
Sbjct: 434 QLTPHGDLPYIEF-----RCRGRPAHCCLVEEERDGKPWYFDIKRYVESKEYPLEASDND 598
Query: 1204 KQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAK 1263
K+ R+ AA F + LYKR LL C+ +E + +L EVHEG G+H +G ++ K
Sbjct: 599 KRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFGTHSNGHAMARK 778
Query: 1264 LLRAGYYW 1271
+LRAGYYW
Sbjct: 779 ILRAGYYW 802
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 87.4 bits (215), Expect = 4e-17
Identities = 46/121 (38%), Positives = 69/121 (57%)
Frame = +3
Query: 520 EDYQQERIEPVEDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMP 579
ED + + +L D+ G+G + +KIGT + + LI LL++ D+FAWS DMP
Sbjct: 951 EDQEMGPHQEETELVDLGSGSGKRE-VKIGTGITAPIREELIILLRDYQDIFAWSYQDMP 1127
Query: 580 GIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANT 639
G+ + H L +NP PV QK R+M E + EEV+K +A F++ +YP W+AN
Sbjct: 1128 GLSSDIVQHRLPLNPECSPVKQKLRRMKPETSLKIKEEVKK*FDAGFLAVARYPKWVANI 1307
Query: 640 V 640
V
Sbjct: 1308 V 1310
>BI316922
Length = 405
Score = 83.6 bits (205), Expect = 6e-16
Identities = 37/90 (41%), Positives = 57/90 (63%)
Frame = +3
Query: 1245 EVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTS 1304
E+H G+CG H + + ++LR GYY M + C E+VKKC++C +F + EL +
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 1305 VFSPWPFHKSGVDIVGPFPPAP*QLKFLIV 1334
+ +PWPF GVDI+ PFP + Q+K+L+V
Sbjct: 183 IVAPWPFAI*GVDILRPFPLSKRQVKYLLV 272
>AW184779
Length = 432
Score = 74.3 bits (181), Expect(2) = 2e-14
Identities = 34/69 (49%), Positives = 43/69 (62%)
Frame = +1
Query: 1221 LYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCE 1280
LYKR LLRC+ E + +L+EVHEG G+H + ++ K+LR GYYW M DCC
Sbjct: 16 LYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDCCI 195
Query: 1281 FVKKCDKCQ 1289
V KC KCQ
Sbjct: 196 HVWKCHKCQ 222
Score = 24.3 bits (51), Expect(2) = 2e-14
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 1289 QRFSDKKTAPANELTSVFSPWPF 1311
Q F+D AP L + +PWP+
Sbjct: 224 QTFADNVNAPPIPLNVLAAPWPY 292
>BG839293
Length = 781
Score = 59.7 bits (143), Expect = 1e-08
Identities = 31/82 (37%), Positives = 46/82 (55%)
Frame = +1
Query: 520 EDYQQERIEPVEDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMP 579
ED + + +L D+ IG+G + +KIGT + + LI LL++ D+FAWS DMP
Sbjct: 487 EDQEMGPHQEETELVDLGIGSGKRE-VKIGTGITAPIREELIILLKDYQDIFAWSYQDMP 663
Query: 580 GIDIKVACHHLAINPSVKPVVQ 601
G+ + H L +NP PV Q
Sbjct: 664 GLSSDIVQHQLPLNPECSPVKQ 729
>TC211815
Length = 704
Score = 46.6 bits (109), Expect = 8e-05
Identities = 22/54 (40%), Positives = 32/54 (58%)
Frame = +2
Query: 1493 PHSTTGETPFTMVYGADAMLPVEIDTPTWRRENFNEEANEVGIQCTMDMIDEIR 1546
P STT ETPF ++YG MLP+E+ R F E N+ +Q +D+I ++R
Sbjct: 227 PQSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQIDLDLIKQVR 388
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 43.1 bits (100), Expect = 0.001
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +1
Query: 1486 LWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWR 1522
L Y T+ ++TG TPF++VYG +A+LP E++ P+ R
Sbjct: 85 LHGYRTSVRTSTGATPFSLVYGMEAVLPFEVEVPSLR 195
>AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine max}, partial
(3%)
Length = 464
Score = 41.2 bits (95), Expect = 0.004
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 1240 KLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQR 1290
K+++ E H G H +G + + A +YWP+M +D +FV++C CQ+
Sbjct: 274 KMIMTESHASKVGGH-AGTTRTIVRINAQFYWPKMREDIMKFVQECVICQQ 423
>BI321666
Length = 430
Score = 40.4 bits (93), Expect = 0.006
Identities = 22/69 (31%), Positives = 35/69 (49%), Gaps = 7/69 (10%)
Frame = +2
Query: 1264 LLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANEL-------TSVFSPWPFHKSGV 1316
+L++ +Y P + +D + C+KCQR + + NEL +F W G+
Sbjct: 14 VLQSRFYLPSIFKDAYVHAQSCNKCQR--TRSVSKRNELPLHTILEVEIFDYW-----GI 172
Query: 1317 DIVGPFPPA 1325
D VGPFPP+
Sbjct: 173 DFVGPFPPS 199
>TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (12%)
Length = 561
Score = 40.0 bits (92), Expect = 0.008
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 1090 RSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAS 1149
+ DS L+ NQI G ++ K+ + + L F F++ ++PRE N AD A LA
Sbjct: 70 QGDSLLVCNQIQGLWKIKNQNMGTLCXEAKELKDKFLSFKISHIPREYNSEADAQANLAI 249
Query: 1150 TKR 1152
R
Sbjct: 250 NLR 258
>TC206741
Length = 1191
Score = 36.2 bits (82), Expect = 0.11
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 1255 ISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQR---FSDKKTAPANELTSV 1305
I S + +L ++ +YWP + + E+V+ CD CQR S + P+N + +
Sbjct: 336 IKQAS*MIELKQSSFYWPTLWKGAYEYVQTCDNCQRTGGISRRNEMPSNSIIPI 175
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 34.3 bits (77), Expect = 0.43
Identities = 19/64 (29%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
Frame = -3
Query: 1486 LWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPT-WRRENFNEEANEVGIQCTMDM--I 1542
LW++ T + G +P+ +V+G LPVEI+ W + N ++ G + + + +
Sbjct: 211 LWAHRTAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSEL 32
Query: 1543 DEIR 1546
DEIR
Sbjct: 31 DEIR 20
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,906,015
Number of Sequences: 63676
Number of extensions: 915257
Number of successful extensions: 6473
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 6399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6471
length of query: 1546
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1436
effective length of database: 5,635,272
effective search space: 8092250592
effective search space used: 8092250592
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC125481.2